See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/1793/>
------------------------------------------ [...truncated 9752 lines...] [INFO] --- maven-jar-plugin:2.3.1:jar (default-jar) @ model-impl-table-performance-debug --- [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/model-impl/table-performance-debug/target/model-impl-table-performance-debug-3.0.0-beta2-SNAPSHOT.jar> ignoring exception during new ExecutedMojo null [INFO] [INFO] --- maven-source-plugin:2.1.2:jar (attach-sources) @ model-impl-table-performance-debug --- [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/model-impl/table-performance-debug/target/model-impl-table-performance-debug-3.0.0-beta2-SNAPSHOT-sources.jar> [INFO] [INFO] --- maven-assembly-plugin:2.2:attached (make-assembly) @ model-impl-table-performance-debug --- [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] org/cytoscape/model/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] META-INF/spring/ already added, skipping [INFO] META-INF/spring/bundle-context-osgi.xml-legacy already added, skipping [INFO] META-INF/spring/bundle-context.xml-legacy already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] org/cytoscape/equations/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] org/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] META-INF/spring/ already added, skipping [INFO] META-INF/spring/bundle-context-osgi.xml-legacy already added, skipping [INFO] META-INF/spring/bundle-context.xml-legacy already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] about.html already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] META-INF/spring/ already added, skipping [INFO] META-INF/spring/bundle-context-osgi.xml-legacy already added, skipping [INFO] META-INF/spring/bundle-context.xml-legacy already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] org/cytoscape/event/ already added, skipping [INFO] readme.txt already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] org/cytoscape/model/ already added, skipping [INFO] org/cytoscape/model/subnetwork/ already added, skipping [INFO] org/cytoscape/model/internal/ already added, skipping [INFO] org/cytoscape/model/internal/tsort/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] META-INF/maven/org.cytoscape/model-impl/ already added, skipping [INFO] META-INF/maven/org.cytoscape/model-impl/pom.xml already added, skipping [INFO] META-INF/maven/org.cytoscape/model-impl/pom.properties already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] org/ already added, skipping [INFO] org/osgi/ already added, skipping [INFO] org/osgi/service/ already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] org/cytoscape/model/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/model-impl/table-performance-debug/target/model-impl-table-performance-debug-3.0.0-beta2-SNAPSHOT-jar-with-dependencies.jar> [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [INFO] org/ already added, skipping [INFO] org/cytoscape/ already added, skipping [INFO] org/cytoscape/model/ already added, skipping [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] META-INF/maven/org.cytoscape/ already added, skipping [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/model-impl/table-performance-debug/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$model-impl-table-performance-debug/builds/2012-10-10_20-03-39/archive/org.cytoscape/model-impl-table-performance-debug/3.0.0-beta2-SNAPSHOT/model-impl-table-performance-debug-3.0.0-beta2-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/model-impl/table-performance-debug/target/model-impl-table-performance-debug-3.0.0-beta2-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$model-impl-table-performance-debug/builds/2012-10-10_20-03-39/archive/org.cytoscape/model-impl-table-performance-debug/3.0.0-beta2-SNAPSHOT/model-impl-table-performance-debug-3.0.0-beta2-SNAPSHOT.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/model-impl/table-performance-debug/target/model-impl-table-performance-debug-3.0.0-beta2-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$model-impl-table-performance-debug/builds/2012-10-10_20-03-39/archive/org.cytoscape/model-impl-table-performance-debug/3.0.0-beta2-SNAPSHOT/model-impl-table-performance-debug-3.0.0-beta2-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... SUCCESS [4.112s] [INFO] Cytoscape BioPAX Impl (biopax-impl) ............... SUCCESS [8.070s] [INFO] Cytoscape Command Executor Impl (command-executor-impl) SUCCESS [3.377s] [INFO] Cytoscape Equations Impl (equations-impl) ......... SUCCESS [9.547s] [INFO] Cytoscape Model Impl Parent (model-impl-parent) ... SUCCESS [0.516s] [INFO] Cytoscape Model Impl (model-impl) ................. SUCCESS [11.221s] [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SUCCESS [0.434s] [INFO] Cytoscape View Model Impl (viewmodel-impl) ........ SUCCESS [4.652s] [INFO] Cytoscape Ding Impl Parent (ding-impl) ............ SUCCESS [0.380s] [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SUCCESS [1:24.449s] [INFO] org.cytoscape.work-impl ........................... SUCCESS [4.817s] [INFO] Cytoscape Core Task Impl (core-task-impl) ......... SUCCESS [14.313s] [INFO] Cytoscape CPath2 Impl (cpath2-impl) ............... SUCCESS [14.841s] [INFO] Cytoscape Groups Impl (group-impl) ................ SUCCESS [7.000s] [INFO] Cytoscape IO Impl Parent (io-impl-parent) ......... SUCCESS [0.505s] [INFO] Cytoscape IO Impl (io-impl) ....................... SUCCESS [19.386s] [INFO] Cytoscape Event Impl Parent (event-impl-parent) ... SUCCESS [0.476s] [INFO] Cytoscape Event Impl (event-impl) ................. SUCCESS [10.238s] [INFO] Cytoscape Layout Impl (layout-impl) ............... SUCCESS [8.809s] [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SUCCESS [38.412s] [INFO] Cytoscape Editor Impl (editor-impl) ............... SUCCESS [8.726s] [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SUCCESS [8.351s] [INFO] Cytoscape Filters Impl (filter-impl) .............. SUCCESS [8.164s] [INFO] Cytoscape GraphML Impl (graphml-impl) ............. SUCCESS [8.370s] [INFO] Cytoscape Group Data Impl (group-data-impl) ....... SUCCESS [9.111s] [INFO] Cytoscape Group View Impl (group-view-impl) ....... SUCCESS [2.985s] [INFO] Cytoscape IO Impl Performance (io-impl-performance) SUCCESS [22.477s] [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SUCCESS [5.950s] [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) . SUCCESS [3.151s] [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SUCCESS [4.727s] [INFO] Cytoscape Linkout Impl (linkout-impl) ............. SUCCESS [3.263s] [INFO] Cytoscape Log Swing Impl (log-swing-impl) ......... SUCCESS [6.112s] [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) . SUCCESS [5.324s] [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SUCCESS [10.471s] [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) FAILURE [4.513s] [INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) SKIPPED [INFO] Cytoscape Merge Impl (network-merge-impl) ......... SKIPPED [INFO] Cytoscape App Impl (app-impl) ..................... SKIPPED [INFO] Cytoscape Presentation Impl (presentation-impl) ... SKIPPED [INFO] Cytoscape Property Impl (property-impl) ........... SKIPPED [INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) . SKIPPED [INFO] Cytoscape PSI-MI Impl (psi-mi-impl) ............... SKIPPED [INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) SKIPPED [INFO] Cytoscape SBML Impl (sbml-impl) ................... SKIPPED [INFO] Cytoscape Search Impl (search-impl) ............... SKIPPED [INFO] Cytoscape Session Impl Parent (session-impl-parent) SKIPPED [INFO] Cytoscape Session Impl (session-impl) ............. SKIPPED [INFO] Cytoscape Datasource Impl (datasource-impl) ....... SKIPPED [INFO] org.cytoscape.work-headless-impl .................. SKIPPED [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) . SKIPPED [INFO] Cytoscape VizMap Impl (vizmap-impl) ............... SKIPPED [INFO] Cytoscape Application Impl (application-impl) ..... SKIPPED [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ....... SKIPPED [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SKIPPED [INFO] Cytoscape Work Swing Impl (work-swing-impl) ....... SKIPPED [INFO] Cytoscape Session Impl Integration Test (session-impl-integration-test) SKIPPED [INFO] Cytoscape Help Impl (help-impl) ................... SKIPPED [INFO] Cytoscape Swing Utility Impl (swing-util-impl) .... SKIPPED [INFO] Cytoscape Swing Application Impl (swing-application-impl) SKIPPED [INFO] Cytoscape Table Browser Impl (table-browser-impl) . SKIPPED [INFO] Cytoscape Table Import Impl (table-import-impl) ... SKIPPED [INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) SKIPPED [INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl) SKIPPED [INFO] Cytoscape Webservice Impl (webservice-impl) ....... SKIPPED [INFO] Cytoscape NCBI Webservice Impl (webservice-ncbi-client-impl) SKIPPED [INFO] Cytoscape PSIQUIC Web Service Impl (webservice-psicquic-client-impl) SKIPPED [INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) SKIPPED [INFO] Cytoscape Welcome Screen Impl (welcome-impl) ...... SKIPPED [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SKIPPED [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) ... SKIPPED [INFO] Cytoscape Scripting Impl (scripting-impl) ......... SKIPPED [INFO] Cytoscape Headless Application Impl (headless-application-impl) SKIPPED [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6:23.551s [INFO] Finished at: Wed Oct 10 20:10:07 GMT-05:00 2012 [INFO] Final Memory: 91M/217M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-assembly-plugin:2.2:attached (make-assembly) on project model-impl-table-performance-debug: Failed to create assembly: Error creating assembly archive jar-with-dependencies: Problem creating jar: JAR entry META-INF/maven/org.cytoscape/event-api/pom.properties not found in /opt/tomcat-home/.m2/repository/org/cytoscape/event-api/3.0.0-beta4-SNAPSHOT/event-api-3.0.0-beta4-SNAPSHOT.jar cause : Failed to create assembly: Error creating assembly archive jar-with-dependencies: Problem creating jar: JAR entry META-INF/maven/org.cytoscape/event-api/pom.properties not found in /opt/tomcat-home/.m2/repository/org/cytoscape/event-api/3.0.0-beta4-SNAPSHOT/event-api-3.0.0-beta4-SNAPSHOT.jar Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-assembly-plugin:2.2:attached (make-assembly) on project model-impl-table-performance-debug: Failed to create assembly: Error creating assembly archive jar-with-dependencies: Problem creating jar: JAR entry META-INF/maven/org.cytoscape/event-api/pom.properties not found in /opt/tomcat-home/.m2/repository/org/cytoscape/event-api/3.0.0-beta4-SNAPSHOT/event-api-3.0.0-beta4-SNAPSHOT.jar at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:662) Caused by: org.apache.maven.plugin.MojoExecutionException: Failed to create assembly: Error creating assembly archive jar-with-dependencies: Problem creating jar: JAR entry META-INF/maven/org.cytoscape/event-api/pom.properties not found in /opt/tomcat-home/.m2/repository/org/cytoscape/event-api/3.0.0-beta4-SNAPSHOT/event-api-3.0.0-beta4-SNAPSHOT.jar at org.apache.maven.plugin.assembly.mojos.AbstractAssemblyMojo.execute(AbstractAssemblyMojo.java:468) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Caused by: org.apache.maven.plugin.assembly.archive.ArchiveCreationException: Error creating assembly archive jar-with-dependencies: Problem creating jar: JAR entry META-INF/maven/org.cytoscape/event-api/pom.properties not found in /opt/tomcat-home/.m2/repository/org/cytoscape/event-api/3.0.0-beta4-SNAPSHOT/event-api-3.0.0-beta4-SNAPSHOT.jar at org.apache.maven.plugin.assembly.archive.DefaultAssemblyArchiver.createArchive(DefaultAssemblyArchiver.java:196) at org.apache.maven.plugin.assembly.mojos.AbstractAssemblyMojo.execute(AbstractAssemblyMojo.java:409) ... 29 more Caused by: org.codehaus.plexus.archiver.ArchiverException: Problem creating jar: JAR entry META-INF/maven/org.cytoscape/event-api/pom.properties not found in /opt/tomcat-home/.m2/repository/org/cytoscape/event-api/3.0.0-beta4-SNAPSHOT/event-api-3.0.0-beta4-SNAPSHOT.jar at org.codehaus.plexus.archiver.AbstractArchiver.createArchive(AbstractArchiver.java:888) at org.apache.maven.plugin.assembly.archive.archiver.AssemblyProxyArchiver.createArchive(AssemblyProxyArchiver.java:512) at org.apache.maven.plugin.assembly.archive.DefaultAssemblyArchiver.createArchive(DefaultAssemblyArchiver.java:192) ... 30 more Caused by: java.io.FileNotFoundException: JAR entry META-INF/maven/org.cytoscape/event-api/pom.properties not found in /opt/tomcat-home/.m2/repository/org/cytoscape/event-api/3.0.0-beta4-SNAPSHOT/event-api-3.0.0-beta4-SNAPSHOT.jar at sun.net.www.protocol.jar.JarURLConnection.connect(JarURLConnection.java:122) at sun.net.www.protocol.jar.JarURLConnection.getInputStream(JarURLConnection.java:132) at java.net.URL.openStream(URL.java:1010) at org.codehaus.plexus.components.io.resources.PlexusIoURLResource.getContents(PlexusIoURLResource.java:30) at org.codehaus.plexus.archiver.ArchiveEntry.getInputStream(ArchiveEntry.java:104) at org.codehaus.plexus.archiver.zip.AbstractZipArchiver.zipFile(AbstractZipArchiver.java:590) at org.codehaus.plexus.archiver.zip.AbstractZipArchiver.addResources(AbstractZipArchiver.java:426) at org.codehaus.plexus.archiver.zip.AbstractZipArchiver.createArchiveMain(AbstractZipArchiver.java:349) at org.codehaus.plexus.archiver.zip.AbstractZipArchiver.execute(AbstractZipArchiver.java:250) at org.codehaus.plexus.archiver.AbstractArchiver.createArchive(AbstractArchiver.java:871) ... 32 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to bad build status FAILURE -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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