See <http://code.cytoscape.org/jenkins/job/Cytoscape_2.X_application/27/changes>
Changes: [rodche] SIF-format, import biopax attributes from Pathway Commons, bug fixed. 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http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/cytoscape/corelibs/task/maven-metadata.xml (480 B at 18.0 KB/sec) Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/cytoscape/corelibs/task/maven-metadata.xml Downloading: http://repo1.maven.org/maven2/cytoscape/corelibs/task/maven-metadata.xml Downloaded: http://cytoscape.wodaklab.org/nexus/content/repositories/releases/cytoscape/corelibs/task/maven-metadata.xml (654 B at 17.3 KB/sec) [WARNING] Could not transfer metadata cytoscape.corelibs:task/maven-metadata.xml from/to cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/): Error transferring file: Server returned HTTP response code: 500 for URL: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/cytoscape/corelibs/task/maven-metadata.xml [WARNING] Could not transfer metadata cytoscape.corelibs:task/maven-metadata.xml from/to cytoscape_biopax_snapshot (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/): Error transferring file: Server returned HTTP response code: 500 for URL: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/cytoscape/corelibs/task/maven-metadata.xml Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/releases/cytoscape/corelibs/giny/maven-metadata.xml Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/cytoscape/corelibs/giny/maven-metadata.xml Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/cytoscape/corelibs/giny/maven-metadata.xml Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/thirdparty/cytoscape/corelibs/giny/maven-metadata.xml Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/cytoscape/corelibs/giny/maven-metadata.xml Downloaded: 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for URL: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-snapshot/cytoscape/corelibs/giny/maven-metadata.xml [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape_2.X_application/ws/trunk/distribution/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape_2.X_application/modules/cytoscape$cytoscape/builds/2012-10-16_14-04-05/archive/cytoscape/cytoscape/2.8.4-SNAPSHOT/cytoscape-2.8.4-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Parent POM .............................. SUCCESS [8.569s] [INFO] Cytoscape Core Libraries Parent POM ............... SUCCESS [0.608s] [INFO] commons-cli-1-x-cytocape-custom ................... SUCCESS [10.673s] [INFO] equations ......................................... SUCCESS [6.722s] [INFO] util-intr ......................................... SUCCESS [7.870s] [INFO] geom-spacial ...................................... SUCCESS [3.902s] [INFO] geom-rtree ........................................ SUCCESS [8.033s] [INFO] GINY API .......................................... SUCCESS [5.429s] [INFO] graph-fixed ....................................... SUCCESS [4.475s] [INFO] graph-dynamic ..................................... SUCCESS [6.556s] [INFO] nerius-math-xform ................................. SUCCESS [5.290s] [INFO] obo ............................................... SUCCESS [5.043s] [INFO] phoebe-dnd ........................................ SUCCESS [5.290s] [INFO] render-immed ...................................... SUCCESS [34.366s] [INFO] render-export ..................................... SUCCESS [3.205s] [INFO] render-stateful ................................... SUCCESS [7.981s] [INFO] task .............................................. SUCCESS [5.897s] [INFO] undo-support ...................................... SUCCESS [6.125s] [INFO] fing .............................................. SUCCESS [6.198s] [INFO] ding .............................................. SUCCESS [9.630s] [INFO] Cytoscape Documentation ........................... SUCCESS [18.369s] [INFO] Cytoscape Application ............................. SUCCESS [2:04.060s] [INFO] Cytoscape Core Plugins Parent POM ................. SUCCESS [1.051s] [INFO] Advanced Network Merge ............................ SUCCESS [12.901s] [INFO] Automatic Layout .................................. SUCCESS [16.423s] [INFO] BioMart Client .................................... SUCCESS [10.973s] [INFO] BioPAX ............................................ SUCCESS [15.644s] [INFO] Editor ............................................ SUCCESS [10.514s] [INFO] Equation Functions ................................ SUCCESS [8.805s] [INFO] Manual Layout ..................................... SUCCESS [9.292s] [INFO] NCBI Client ....................................... SUCCESS [27.698s] [INFO] PSI-MI ............................................ SUCCESS [15.482s] [INFO] QuickFind ......................................... SUCCESS [13.122s] [INFO] RFilters .......................................... SUCCESS [12.030s] [INFO] SBML Reader ....................................... SUCCESS [8.234s] [INFO] Table Import ...................................... SUCCESS [33.596s] [INFO] Attribute Browser ................................. SUCCESS [11.641s] [INFO] cPath ............................................. SUCCESS [11.513s] [INFO] Pathway Commons plugin ............................ SUCCESS [21.997s] [INFO] Filters ........................................... SUCCESS [11.089s] [INFO] Linkout ........................................... SUCCESS [7.757s] [INFO] Core Commands Plugin .............................. SUCCESS [5.456s] [INFO] NetworkAnalyzer ................................... SUCCESS [29.159s] [INFO] Cytoscape Distribution ............................ FAILURE [21.831s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 11:00.233s [INFO] Finished at: Tue Oct 16 14:15:09 GMT-05:00 2012 [INFO] Final Memory: 146M/365M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal on project cytoscape: Could not resolve dependencies for project cytoscape:cytoscape:jar:2.8.4-SNAPSHOT: Failed to collect dependencies for [cytoscape:application:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.corelibs:docs:zip:html:2.8.4-SNAPSHOT (compile), cytoscape.corelibs:docs:zip:pdf:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:advanced-network-merge:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:automatic-layout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:biomart-client:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:biopax:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:editor:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:equation-functions:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:manual-layout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:ncbi-client:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:psi-mi:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:rfilters:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:sbml-reader:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:table-import:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:attribute-browser:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:cpath:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:cpath2:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:linkout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:quickfind:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:filters:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:core-commands:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:network-analyzer:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape-temp:y-layouts:jar:1.0.1 (compile), junit:junit:jar:3.8.1 (test)] cause : Could not resolve dependencies for project cytoscape:cytoscape:jar:2.8.4-SNAPSHOT: Failed to collect dependencies for [cytoscape:application:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.corelibs:docs:zip:html:2.8.4-SNAPSHOT (compile), cytoscape.corelibs:docs:zip:pdf:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:advanced-network-merge:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:automatic-layout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:biomart-client:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:biopax:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:editor:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:equation-functions:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:manual-layout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:ncbi-client:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:psi-mi:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:rfilters:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:sbml-reader:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:table-import:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:attribute-browser:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:cpath:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:cpath2:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:linkout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:quickfind:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:filters:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:core-commands:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:network-analyzer:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape-temp:y-layouts:jar:1.0.1 (compile), junit:junit:jar:3.8.1 (test)] Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal on project cytoscape: Could not resolve dependencies for project cytoscape:cytoscape:jar:2.8.4-SNAPSHOT: Failed to collect dependencies for [cytoscape:application:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.corelibs:docs:zip:html:2.8.4-SNAPSHOT (compile), cytoscape.corelibs:docs:zip:pdf:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:advanced-network-merge:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:automatic-layout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:biomart-client:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:biopax:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:editor:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:equation-functions:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:manual-layout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:ncbi-client:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:psi-mi:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:rfilters:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:sbml-reader:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:table-import:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:attribute-browser:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:cpath:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:cpath2:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:linkout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:quickfind:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:filters:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:core-commands:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:network-analyzer:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape-temp:y-layouts:jar:1.0.1 (compile), junit:junit:jar:3.8.1 (test)] at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies(LifecycleDependencyResolver.java:196) at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.resolveProjectDependencies(LifecycleDependencyResolver.java:108) at org.apache.maven.lifecycle.internal.MojoExecutor.ensureDependenciesAreResolved(MojoExecutor.java:258) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:201) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:662) Caused by: org.apache.maven.project.DependencyResolutionException: Could not resolve dependencies for project cytoscape:cytoscape:jar:2.8.4-SNAPSHOT: Failed to collect dependencies for [cytoscape:application:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.corelibs:docs:zip:html:2.8.4-SNAPSHOT (compile), cytoscape.corelibs:docs:zip:pdf:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:advanced-network-merge:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:automatic-layout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:biomart-client:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:biopax:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:editor:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:equation-functions:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:manual-layout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:ncbi-client:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:psi-mi:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:rfilters:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:sbml-reader:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:table-import:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:attribute-browser:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:cpath:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:cpath2:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:linkout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:quickfind:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:filters:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:core-commands:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:network-analyzer:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape-temp:y-layouts:jar:1.0.1 (compile), junit:junit:jar:3.8.1 (test)] at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve(DefaultProjectDependenciesResolver.java:139) at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies(LifecycleDependencyResolver.java:171) ... 30 more Caused by: org.sonatype.aether.collection.DependencyCollectionException: Failed to collect dependencies for [cytoscape:application:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.corelibs:docs:zip:html:2.8.4-SNAPSHOT (compile), cytoscape.corelibs:docs:zip:pdf:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:advanced-network-merge:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:automatic-layout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:biomart-client:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:biopax:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:editor:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:equation-functions:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:manual-layout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:ncbi-client:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:psi-mi:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:rfilters:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:sbml-reader:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:table-import:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:attribute-browser:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:cpath:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:cpath2:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:linkout:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:quickfind:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:filters:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:core-commands:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape.coreplugins:network-analyzer:jar:jar-with-dependencies:2.8.4-SNAPSHOT (compile), cytoscape-temp:y-layouts:jar:1.0.1 (compile), junit:junit:jar:3.8.1 (test)] at org.sonatype.aether.impl.internal.DefaultDependencyCollector.collectDependencies(DefaultDependencyCollector.java:262) at org.sonatype.aether.impl.internal.DefaultRepositorySystem.collectDependencies(DefaultRepositorySystem.java:345) at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve(DefaultProjectDependenciesResolver.java:131) ... 31 more Caused by: org.sonatype.aether.resolution.ArtifactDescriptorException: Failed to read artifact descriptor for org.cytoscape.wrappers:com.l2fprod.common.sheet:jar:7.3 at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.loadPom(DefaultArtifactDescriptorReader.java:282) at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.readArtifactDescriptor(DefaultArtifactDescriptorReader.java:172) at org.sonatype.aether.impl.internal.DefaultDependencyCollector.process(DefaultDependencyCollector.java:419) at org.sonatype.aether.impl.internal.DefaultDependencyCollector.process(DefaultDependencyCollector.java:533) at org.sonatype.aether.impl.internal.DefaultDependencyCollector.process(DefaultDependencyCollector.java:533) at org.sonatype.aether.impl.internal.DefaultDependencyCollector.collectDependencies(DefaultDependencyCollector.java:243) ... 33 more Caused by: org.sonatype.aether.resolution.ArtifactResolutionException: Could not transfer artifact org.cytoscape.wrappers:com.l2fprod.common.sheet:pom:7.3 from/to cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/): Error transferring file: Server returned HTTP response code: 500 for URL: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/org/cytoscape/wrappers/com.l2fprod.common.sheet/7.3/com.l2fprod.common.sheet-7.3.pom at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:541) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:220) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolveArtifact(DefaultArtifactResolver.java:197) at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.loadPom(DefaultArtifactDescriptorReader.java:267) ... 38 more Caused by: org.sonatype.aether.transfer.ArtifactTransferException: Could not transfer artifact org.cytoscape.wrappers:com.l2fprod.common.sheet:pom:7.3 from/to cytoscape_biopax_release (http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/): Error transferring file: Server returned HTTP response code: 500 for URL: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/org/cytoscape/wrappers/com.l2fprod.common.sheet/7.3/com.l2fprod.common.sheet-7.3.pom at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:949) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:940) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.flush(WagonRepositoryConnector.java:695) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.flush(WagonRepositoryConnector.java:689) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector.get(WagonRepositoryConnector.java:445) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:460) ... 41 more Caused by: org.apache.maven.wagon.TransferFailedException: Error transferring file: Server returned HTTP response code: 500 for URL: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/org/cytoscape/wrappers/com.l2fprod.common.sheet/7.3/com.l2fprod.common.sheet-7.3.pom at org.apache.maven.wagon.providers.http.LightweightHttpWagon.fillInputData(LightweightHttpWagon.java:143) at org.apache.maven.wagon.StreamWagon.getInputStream(StreamWagon.java:116) at org.apache.maven.wagon.StreamWagon.getIfNewer(StreamWagon.java:88) at org.apache.maven.wagon.StreamWagon.get(StreamWagon.java:61) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.run(WagonRepositoryConnector.java:608) at org.sonatype.aether.util.concurrency.RunnableErrorForwarder$1.run(RunnableErrorForwarder.java:64) ... 3 more Caused by: java.io.IOException: Server returned HTTP response code: 500 for URL: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/org/cytoscape/wrappers/com.l2fprod.common.sheet/7.3/com.l2fprod.common.sheet-7.3.pom at sun.reflect.GeneratedConstructorAccessor62.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at sun.net.www.protocol.http.HttpURLConnection$6.run(HttpURLConnection.java:1491) at java.security.AccessController.doPrivileged(Native Method) at sun.net.www.protocol.http.HttpURLConnection.getChainedException(HttpURLConnection.java:1485) at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1139) at org.apache.maven.wagon.providers.http.LightweightHttpWagon.fillInputData(LightweightHttpWagon.java:122) ... 8 more Caused by: java.io.IOException: Server returned HTTP response code: 500 for URL: http://cytoscape.wodaklab.org/nexus/content/repositories/biopax-release/org/cytoscape/wrappers/com.l2fprod.common.sheet/7.3/com.l2fprod.common.sheet-7.3.pom at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1436) at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:379) at org.apache.maven.wagon.providers.http.LightweightHttpWagon.fillInputData(LightweightHttpWagon.java:115) ... 8 more Sending e-mails to: [email protected] Sending e-mails to: [email protected] channel stopped -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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