Author: clopes
Date: 2012-11-26 12:35:24 -0800 (Mon, 26 Nov 2012)
New Revision: 30839
Added:
core3/impl/trunk/io-impl/impl/src/test/resources/testData/vizmap/v270_vizmap.props
Modified:
core3/impl/trunk/io-impl/impl/src/test/java/org/cytoscape/io/internal/util/vizmap/VisualStyleSerializerTest.java
Log:
Fixes #46 : Added unit tests for Cytoscape 2.7 vizmap.props files.
Modified:
core3/impl/trunk/io-impl/impl/src/test/java/org/cytoscape/io/internal/util/vizmap/VisualStyleSerializerTest.java
===================================================================
---
core3/impl/trunk/io-impl/impl/src/test/java/org/cytoscape/io/internal/util/vizmap/VisualStyleSerializerTest.java
2012-11-26 00:47:18 UTC (rev 30838)
+++
core3/impl/trunk/io-impl/impl/src/test/java/org/cytoscape/io/internal/util/vizmap/VisualStyleSerializerTest.java
2012-11-26 20:35:24 UTC (rev 30839)
@@ -36,6 +36,7 @@
import org.cytoscape.view.presentation.property.LineTypeVisualProperty;
import org.cytoscape.view.presentation.property.NodeShapeVisualProperty;
import org.cytoscape.view.presentation.property.NullVisualProperty;
+import org.cytoscape.view.presentation.property.values.ArrowShape;
import org.cytoscape.view.presentation.property.values.LineType;
import org.cytoscape.view.presentation.property.values.NodeShape;
import org.cytoscape.view.vizmap.VisualMappingFunction;
@@ -300,10 +301,95 @@
assertEquals(INTERACTION, eTypeMp.getMappingColumnName());
assertEquals(LineTypeVisualProperty.LONG_DASH,
eTypeMp.getMapValue("pd"));
assertEquals(LineTypeVisualProperty.SOLID,
eTypeMp.getMapValue("pp"));
+
+ VisualPropertyDependency<?> dep1 = getDependency(s3,
NODE_SIZE_LOCKED_DEPENDENCY);
+ assertFalse(dep1.isDependencyEnabled());
}
@Test
@SuppressWarnings("unchecked")
+ public void testCy270Vizmap() throws Exception {
+ Properties props = loadVizmapProps("v270_vizmap.props");
+ Set<VisualStyle> styles = serializer.createVisualStyles(props);
+ assertEquals(1, styles.size()); // "default" is not returned
+ assertVisualStylesNotNull(styles, new String[] {
"Binary_SIF_Version_1" });
+
+ // Test visual styles (defaults, mappings and dependencies)
+ // -----
+ VisualStyle s = getVisualStyleByTitle(styles,
"Binary_SIF_Version_1");
+
+ assertEquals(new Color(255,153,153),
s.getDefaultValue(NODE_FILL_COLOR));
+ assertEquals(new Color(255,255,0),
s.getDefaultValue(NODE_SELECTED_PAINT));
+ assertEquals(NodeShapeVisualProperty.ELLIPSE,
s.getDefaultValue(NODE_SHAPE));
+ assertEquals(70, s.getDefaultValue(NODE_WIDTH).intValue());
+ assertEquals(30, s.getDefaultValue(NODE_HEIGHT).intValue());
+ assertEquals(35, s.getDefaultValue(NODE_SIZE).intValue());
+ assertEquals(125,
s.getDefaultValue(NODE_TRANSPARENCY).intValue());
+ assertEquals(new Color(0,0,0),
s.getDefaultValue(NODE_BORDER_PAINT));
+ assertEquals(1,
s.getDefaultValue(NODE_BORDER_WIDTH).intValue());
+ assertEquals(255,
s.getDefaultValue(NODE_BORDER_TRANSPARENCY).intValue());
+ assertEquals("", s.getDefaultValue(NODE_LABEL));
+ assertEquals(Font.decode("Default-PLAIN-12"),
s.getDefaultValue(NODE_LABEL_FONT_FACE));
+ assertEquals(12,
s.getDefaultValue(NODE_LABEL_FONT_SIZE).intValue());
+ assertEquals(new Color(0,0,0),
s.getDefaultValue(NODE_LABEL_COLOR));
+ assertEquals(100,
s.getDefaultValue(NODE_LABEL_WIDTH).intValue());
+ assertEquals(255,
s.getDefaultValue(NODE_LABEL_TRANSPARENCY).intValue());
+ assertEquals(LineTypeVisualProperty.SOLID,
s.getDefaultValue(NODE_BORDER_LINE_TYPE));
+ assertEquals("", s.getDefaultValue(NODE_TOOLTIP));
+ assertEquals(Boolean.TRUE,
s.getDefaultValue(NODE_NESTED_NETWORK_IMAGE_VISIBLE));
+
+ assertEquals(4, s.getDefaultValue(EDGE_WIDTH).intValue());
+ assertEquals(new Color(0,0,0),
s.getDefaultValue(EDGE_STROKE_UNSELECTED_PAINT));
+ assertEquals(new Color(255,0,0),
s.getDefaultValue(EDGE_STROKE_SELECTED_PAINT));
+ assertEquals(255,
s.getDefaultValue(EDGE_TRANSPARENCY).intValue());
+ assertEquals(LineTypeVisualProperty.SOLID,
s.getDefaultValue(EDGE_LINE_TYPE));
+ assertEquals("", s.getDefaultValue(EDGE_LABEL));
+ assertEquals(Font.decode("SanSerif-PLAIN-10"),
s.getDefaultValue(EDGE_LABEL_FONT_FACE));
+ assertEquals(10,
s.getDefaultValue(EDGE_LABEL_FONT_SIZE).intValue());
+ assertEquals(new Color(0,0,0),
s.getDefaultValue(EDGE_LABEL_COLOR));
+ assertEquals(255,
s.getDefaultValue(EDGE_LABEL_TRANSPARENCY).intValue());
+ assertEquals(ArrowShapeVisualProperty.NONE,
s.getDefaultValue(EDGE_SOURCE_ARROW_SHAPE));
+ assertEquals(ArrowShapeVisualProperty.NONE,
s.getDefaultValue(EDGE_TARGET_ARROW_SHAPE));
+ assertEquals("", s.getDefaultValue(EDGE_TOOLTIP));
+
+ PassthroughMapping<String, String> nLabelMp =
(PassthroughMapping<String, String>) s.getVisualMappingFunction(NODE_LABEL);
+ assertEquals("biopax.node_label",
nLabelMp.getMappingColumnName());
+ assertEquals(String.class, nLabelMp.getMappingColumnType());
+
+ assertNull(s.getVisualMappingFunction(EDGE_LABEL));
+
+ DiscreteMapping<String, Paint> nColorMp =
(DiscreteMapping<String, Paint>) s.getVisualMappingFunction(NODE_FILL_COLOR);
+ assertEquals("biopax.entity_type",
nColorMp.getMappingColumnName());
+ assertEquals(String.class, nColorMp.getMappingColumnType());
+ assertEquals(new Color(153,153,255),
nColorMp.getMapValue("Complex"));
+ assertNull(nColorMp.getMapValue("Protein"));
+
+ DiscreteMapping<String, Paint> eColorMp =
(DiscreteMapping<String, Paint>)
s.getVisualMappingFunction(EDGE_STROKE_UNSELECTED_PAINT);
+ assertEquals(INTERACTION, eColorMp.getMappingColumnName());
+ assertEquals(String.class, eColorMp.getMappingColumnType());
+ // Test a few entries
+ assertEquals(new Color(255,192,0),
eColorMp.getMapValue("COMPONENT_OF"));
+ assertEquals(new Color(255,0,0),
eColorMp.getMapValue("CO_CONTROL_DEPENDENT_ANTI"));
+ assertEquals(new Color(0,176,80),
eColorMp.getMapValue("CO_CONTROL_DEPENDENT_SIMILAR"));
+ assertEquals(new Color(253,149,166),
eColorMp.getMapValue("CO_CONTROL_INDEPENDENT_ANTI"));
+ assertEquals(new Color(0,176,80),
eColorMp.getMapValue("CO_CONTROL_DEPENDENT_SIMILAR"));
+
+ DiscreteMapping<String, ArrowShape> eTgtArrowMp =
(DiscreteMapping<String, ArrowShape>)
s.getVisualMappingFunction(EDGE_TARGET_ARROW_SHAPE);
+ assertEquals(INTERACTION, eTgtArrowMp.getMappingColumnName());
+ assertEquals(String.class, eTgtArrowMp.getMappingColumnType());
+ assertEquals(ArrowShapeVisualProperty.ARROW,
eTgtArrowMp.getMapValue("COMPONENT_OF"));
+ assertEquals(ArrowShapeVisualProperty.ARROW,
eTgtArrowMp.getMapValue("METABOLIC_CATALYSIS"));
+ assertEquals(ArrowShapeVisualProperty.ARROW,
eTgtArrowMp.getMapValue("SEQUENTIAL_CATALYSIS"));
+ assertEquals(ArrowShapeVisualProperty.ARROW,
eTgtArrowMp.getMapValue("SEQUENTIAL_CATALYSIS"));
+ assertEquals(ArrowShapeVisualProperty.ARROW,
eTgtArrowMp.getMapValue("STATE_CHANGE"));
+ assertNull(eTgtArrowMp.getMapValue("INTERACTS_WITH"));
+
+ VisualPropertyDependency<?> dep1 = getDependency(s,
NODE_SIZE_LOCKED_DEPENDENCY);
+ assertFalse(dep1.isDependencyEnabled());
+ }
+
+ @Test
+ @SuppressWarnings("unchecked")
public void testCy283Vizmap() throws Exception {
Properties props = loadVizmapProps("v283_vizmap.props");
Set<VisualStyle> styles = serializer.createVisualStyles(props);
Added:
core3/impl/trunk/io-impl/impl/src/test/resources/testData/vizmap/v270_vizmap.props
===================================================================
---
core3/impl/trunk/io-impl/impl/src/test/resources/testData/vizmap/v270_vizmap.props
(rev 0)
+++
core3/impl/trunk/io-impl/impl/src/test/resources/testData/vizmap/v270_vizmap.props
2012-11-26 20:35:24 UTC (rev 30839)
@@ -0,0 +1,298 @@
+#This file specifies visual mappings for Cytoscape and has been automatically
generated.
+# WARNING: any changes you make to this file while Cytoscape is running may be
overwritten.
+# Any changes may make these visual mappings unreadable.
+# Please make sure you know what you are doing before modifying this file by
hand.
+#
+#Mon Nov 26 14:33:04 EST 2012
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeColor=0,0,0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeFont=SanSerif,plain,10
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeFontSize=10.0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLabel=
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLabelColor=0,0,0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLabelOpacity=255
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLabelPosition=C,C,c,0,0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLabelWidth=100.0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLineStyle=SOLID
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLineWidth=4.0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeOpacity=255
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeSourceArrowColor=0,0,0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeSourceArrowOpacity=255
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeSourceArrowShape=NONE
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeTargetArrowColor=0,0,0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeTargetArrowOpacity=255
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeTargetArrowShape=NONE
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeToolTip=
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeBorderColor=0,0,0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeBorderOpacity=255
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeFillColor=255,255,255
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeFont=Default,plain,12
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeFontSize=12.0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeHight=30.0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLabel=
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLabelColor=0,0,0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLabelOpacity=255
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLabelPosition=C,C,c,0,0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLabelWidth=100.0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLineStyle=SOLID
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLineWidth=1.0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeOpacity=255
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeShape=rect
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeShowNestedNetwork=true
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeSize=35.0
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeToolTip=
+edgeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeWidth=70.0
+edgeAppearanceCalculator.Binary_SIF_Version_1.edgeColorCalculator=Edge Color
+edgeAppearanceCalculator.Binary_SIF_Version_1.edgeTargetArrowShapeCalculator=Edge
Source Arrow Shape
+edgeAppearanceCalculator.Binary_SIF_Version_1.nodeSizeLocked=false
+edgeAppearanceCalculator.default.defaultEdgeColor=0,0,255
+edgeAppearanceCalculator.default.defaultEdgeFont=Default,plain,10
+edgeAppearanceCalculator.default.defaultEdgeFontSize=10.0
+edgeAppearanceCalculator.default.defaultEdgeLabel=
+edgeAppearanceCalculator.default.defaultEdgeLabelColor=0,0,0
+edgeAppearanceCalculator.default.defaultEdgeLabelOpacity=255.0
+edgeAppearanceCalculator.default.defaultEdgeLabelPosition=C,C,c,0,0
+edgeAppearanceCalculator.default.defaultEdgeLabelWidth=100.0
+edgeAppearanceCalculator.default.defaultEdgeLineStyle=SOLID
+edgeAppearanceCalculator.default.defaultEdgeLineWidth=1.5
+edgeAppearanceCalculator.default.defaultEdgeOpacity=255.0
+edgeAppearanceCalculator.default.defaultEdgeSourceArrowColor=0,0,0
+edgeAppearanceCalculator.default.defaultEdgeSourceArrowOpacity=255.0
+edgeAppearanceCalculator.default.defaultEdgeSourceArrowShape=NONE
+edgeAppearanceCalculator.default.defaultEdgeTargetArrowColor=0,0,0
+edgeAppearanceCalculator.default.defaultEdgeTargetArrowOpacity=255.0
+edgeAppearanceCalculator.default.defaultEdgeTargetArrowShape=NONE
+edgeAppearanceCalculator.default.defaultEdgeToolTip=
+edgeAppearanceCalculator.default.defaultNodeBorderColor=0,0,0
+edgeAppearanceCalculator.default.defaultNodeBorderOpacity=255.0
+edgeAppearanceCalculator.default.defaultNodeFillColor=255,255,255
+edgeAppearanceCalculator.default.defaultNodeFont=Default,plain,12
+edgeAppearanceCalculator.default.defaultNodeFontSize=12.0
+edgeAppearanceCalculator.default.defaultNodeHight=30.0
+edgeAppearanceCalculator.default.defaultNodeLabel=
+edgeAppearanceCalculator.default.defaultNodeLabelColor=0,0,0
+edgeAppearanceCalculator.default.defaultNodeLabelOpacity=255.0
+edgeAppearanceCalculator.default.defaultNodeLabelPosition=C,C,c,0,0
+edgeAppearanceCalculator.default.defaultNodeLabelWidth=100.0
+edgeAppearanceCalculator.default.defaultNodeLineStyle=SOLID
+edgeAppearanceCalculator.default.defaultNodeLineWidth=1.0
+edgeAppearanceCalculator.default.defaultNodeOpacity=255.0
+edgeAppearanceCalculator.default.defaultNodeShape=rect
+edgeAppearanceCalculator.default.defaultNodeShowNestedNetwork=true
+edgeAppearanceCalculator.default.defaultNodeSize=35.0
+edgeAppearanceCalculator.default.defaultNodeToolTip=
+edgeAppearanceCalculator.default.defaultNodeWidth=70.0
+edgeAppearanceCalculator.default.nodeSizeLocked=true
+edgeColorCalculator.BasicDiscrete.mapping.controller=interaction
+edgeColorCalculator.BasicDiscrete.mapping.controllerType=4
+edgeColorCalculator.BasicDiscrete.mapping.map.pd=255,0,51
+edgeColorCalculator.BasicDiscrete.mapping.map.pp=0,204,0
+edgeColorCalculator.BasicDiscrete.mapping.type=DiscreteMapping
+edgeColorCalculator.BasicDiscrete.visualPropertyType=EDGE_COLOR
+edgeColorCalculator.Edge\ Color.mapping.controller=interaction
+edgeColorCalculator.Edge\ Color.mapping.controllerType=4
+edgeColorCalculator.Edge\ Color.mapping.map.COMPONENT_OF=255,192,0
+edgeColorCalculator.Edge\ Color.mapping.map.CO_CONTROL_DEPENDENT_ANTI=255,0,0
+edgeColorCalculator.Edge\
Color.mapping.map.CO_CONTROL_DEPENDENT_SIMILAR=0,176,80
+edgeColorCalculator.Edge\
Color.mapping.map.CO_CONTROL_INDEPENDENT_ANTI=253,149,166
+edgeColorCalculator.Edge\
Color.mapping.map.CO_CONTROL_INDEPENDENT_SIMILAR=146,208,80
+edgeColorCalculator.Edge\ Color.mapping.map.INTERACTS_WITH=112,48,160
+edgeColorCalculator.Edge\ Color.mapping.map.IN_SAME_COMPONENT=255,255,0
+edgeColorCalculator.Edge\ Color.mapping.map.METABOLIC_CATALYSIS=0,176,240
+edgeColorCalculator.Edge\ Color.mapping.map.REACTS_WITH=204,193,218
+edgeColorCalculator.Edge\ Color.mapping.map.SEQUENTIAL_CATALYSIS=127,127,127
+edgeColorCalculator.Edge\ Color.mapping.map.STATE_CHANGE=0,112,192
+edgeColorCalculator.Edge\ Color.mapping.type=DiscreteMapping
+edgeColorCalculator.Edge\ Color.visualPropertyType=EDGE_COLOR
+edgeLabelCalculator.EdgeLabel.mapping.controller=interaction
+edgeLabelCalculator.EdgeLabel.mapping.type=PassThroughMapping
+edgeLabelCalculator.EdgeLabel.visualPropertyType=EDGE_LABEL
+edgeLabelCalculator.Solid-Edge\ Label-Passthrough\
Mapper.mapping.controller=interaction
+edgeLabelCalculator.Solid-Edge\ Label-Passthrough\
Mapper.mapping.type=PassThroughMapping
+edgeLabelCalculator.Solid-Edge\ Label-Passthrough\
Mapper.visualPropertyType=EDGE_LABEL
+edgeLineStyleCalculator.Sample1-Edge\ Line\ Style-Discrete\
Mapper.mapping.controller=interaction
+edgeLineStyleCalculator.Sample1-Edge\ Line\ Style-Discrete\
Mapper.mapping.controllerType=4
+edgeLineStyleCalculator.Sample1-Edge\ Line\ Style-Discrete\
Mapper.mapping.map.pd=LONG_DASH
+edgeLineStyleCalculator.Sample1-Edge\ Line\ Style-Discrete\
Mapper.mapping.map.pp=SOLID
+edgeLineStyleCalculator.Sample1-Edge\ Line\ Style-Discrete\
Mapper.mapping.type=DiscreteMapping
+edgeLineStyleCalculator.Sample1-Edge\ Line\ Style-Discrete\
Mapper.visualPropertyType=EDGE_LINE_STYLE
+edgeTargetArrowShapeCalculator.Edge\ Source\ Arrow\
Shape.mapping.controller=interaction
+edgeTargetArrowShapeCalculator.Edge\ Source\ Arrow\
Shape.mapping.controllerType=4
+edgeTargetArrowShapeCalculator.Edge\ Source\ Arrow\
Shape.mapping.map.COMPONENT_OF=ARROW
+edgeTargetArrowShapeCalculator.Edge\ Source\ Arrow\
Shape.mapping.map.METABOLIC_CATALYSIS=ARROW
+edgeTargetArrowShapeCalculator.Edge\ Source\ Arrow\
Shape.mapping.map.SEQUENTIAL_CATALYSIS=ARROW
+edgeTargetArrowShapeCalculator.Edge\ Source\ Arrow\
Shape.mapping.map.STATE_CHANGE=ARROW
+edgeTargetArrowShapeCalculator.Edge\ Source\ Arrow\
Shape.mapping.type=DiscreteMapping
+edgeTargetArrowShapeCalculator.Edge\ Source\ Arrow\
Shape.visualPropertyType=EDGE_TGTARROW_SHAPE
+globalAppearanceCalculator.Binary_SIF_Version_1.defaultBackgroundColor=255,255,255
+globalAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeReverseSelectionColor=0,255,0
+globalAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeSelectionColor=255,0,0
+globalAppearanceCalculator.Binary_SIF_Version_1.defaultNodeReverseSelectionColor=0,255,0
+globalAppearanceCalculator.Binary_SIF_Version_1.defaultNodeSelectionColor=255,255,0
+globalAppearanceCalculator.default.defaultBackgroundColor=204,204,255
+globalAppearanceCalculator.default.defaultEdgeReverseSelectionColor=0,255,0
+globalAppearanceCalculator.default.defaultEdgeSelectionColor=255,0,0
+globalAppearanceCalculator.default.defaultNodeReverseSelectionColor=0,255,0
+globalAppearanceCalculator.default.defaultNodeSelectionColor=255,255,0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeColor=0,0,0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeFont=SanSerif,plain,10
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeFontSize=10.0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLabel=
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLabelColor=0,0,0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLabelOpacity=255
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLabelPosition=C,C,c,0,0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLabelWidth=100.0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLineStyle=SOLID
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeLineWidth=1.0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeOpacity=255
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeSourceArrowColor=0,0,0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeSourceArrowOpacity=255
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeSourceArrowShape=NONE
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeTargetArrowColor=0,0,0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeTargetArrowOpacity=255
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeTargetArrowShape=NONE
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultEdgeToolTip=
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeBorderColor=0,0,0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeBorderOpacity=255
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeFillColor=255,153,153
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeFont=Default,plain,12
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeFontSize=12.0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeHight=30.0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLabel=
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLabelColor=0,0,0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLabelOpacity=255
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLabelPosition=C,C,c,0,0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLabelWidth=100.0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLineStyle=SOLID
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeLineWidth=1.0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeOpacity=125
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeShape=ellipse
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeShowNestedNetwork=true
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeSize=35.0
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeToolTip=
+nodeAppearanceCalculator.Binary_SIF_Version_1.defaultNodeWidth=70.0
+nodeAppearanceCalculator.Binary_SIF_Version_1.nodeFillColorCalculator=Node
Color
+nodeAppearanceCalculator.Binary_SIF_Version_1.nodeLabelCalculator=BioPAX Node
Label
+nodeAppearanceCalculator.Binary_SIF_Version_1.nodeShapeCalculator=Node Shape
+nodeAppearanceCalculator.Binary_SIF_Version_1.nodeSizeLocked=false
+nodeAppearanceCalculator.default.defaultEdgeColor=0,0,0
+nodeAppearanceCalculator.default.defaultEdgeFont=SanSerif,plain,10
+nodeAppearanceCalculator.default.defaultEdgeFontSize=10.0
+nodeAppearanceCalculator.default.defaultEdgeLabel=
+nodeAppearanceCalculator.default.defaultEdgeLabelColor=0,0,0
+nodeAppearanceCalculator.default.defaultEdgeLabelOpacity=255.0
+nodeAppearanceCalculator.default.defaultEdgeLabelPosition=C,C,c,0,0
+nodeAppearanceCalculator.default.defaultEdgeLabelWidth=100.0
+nodeAppearanceCalculator.default.defaultEdgeLineStyle=SOLID
+nodeAppearanceCalculator.default.defaultEdgeLineWidth=1.0
+nodeAppearanceCalculator.default.defaultEdgeOpacity=255.0
+nodeAppearanceCalculator.default.defaultEdgeSourceArrowColor=0,0,0
+nodeAppearanceCalculator.default.defaultEdgeSourceArrowOpacity=255.0
+nodeAppearanceCalculator.default.defaultEdgeSourceArrowShape=NONE
+nodeAppearanceCalculator.default.defaultEdgeTargetArrowColor=0,0,0
+nodeAppearanceCalculator.default.defaultEdgeTargetArrowOpacity=255.0
+nodeAppearanceCalculator.default.defaultEdgeTargetArrowShape=NONE
+nodeAppearanceCalculator.default.defaultEdgeToolTip=
+nodeAppearanceCalculator.default.defaultNodeBorderColor=102,102,102
+nodeAppearanceCalculator.default.defaultNodeBorderOpacity=255.0
+nodeAppearanceCalculator.default.defaultNodeFillColor=255,153,153
+nodeAppearanceCalculator.default.defaultNodeFont=SansSerif.bold,plain,12
+nodeAppearanceCalculator.default.defaultNodeFontSize=12.0
+nodeAppearanceCalculator.default.defaultNodeHight=30.0
+nodeAppearanceCalculator.default.defaultNodeLabel=
+nodeAppearanceCalculator.default.defaultNodeLabelColor=0,0,0
+nodeAppearanceCalculator.default.defaultNodeLabelOpacity=255.0
+nodeAppearanceCalculator.default.defaultNodeLabelPosition=C,C,c,0,0
+nodeAppearanceCalculator.default.defaultNodeLabelWidth=100.0
+nodeAppearanceCalculator.default.defaultNodeLineStyle=SOLID
+nodeAppearanceCalculator.default.defaultNodeLineWidth=1.5
+nodeAppearanceCalculator.default.defaultNodeOpacity=255.0
+nodeAppearanceCalculator.default.defaultNodeShape=ellipse
+nodeAppearanceCalculator.default.defaultNodeShowNestedNetwork=true
+nodeAppearanceCalculator.default.defaultNodeSize=40.0
+nodeAppearanceCalculator.default.defaultNodeToolTip=
+nodeAppearanceCalculator.default.defaultNodeWidth=70.0
+nodeAppearanceCalculator.default.nodeLabelCalculator=NodeLabel
+nodeAppearanceCalculator.default.nodeSizeLocked=true
+nodeBorderColorCalculator.Nested\ Network\ Style-Node\ Border\ Color-Discrete\
Mapper.mapping.controller=has_nested_network
+nodeBorderColorCalculator.Nested\ Network\ Style-Node\ Border\ Color-Discrete\
Mapper.mapping.controllerType=-1
+nodeBorderColorCalculator.Nested\ Network\ Style-Node\ Border\ Color-Discrete\
Mapper.mapping.map.yes=0,102,204
+nodeBorderColorCalculator.Nested\ Network\ Style-Node\ Border\ Color-Discrete\
Mapper.mapping.type=DiscreteMapping
+nodeBorderColorCalculator.Nested\ Network\ Style-Node\ Border\ Color-Discrete\
Mapper.visualPropertyType=NODE_BORDER_COLOR
+nodeBorderColorCalculator.Node\ Border\ Color-Discrete\
Mapper.mapping.controller=has_nested_network
+nodeBorderColorCalculator.Node\ Border\ Color-Discrete\
Mapper.mapping.controllerType=-1
+nodeBorderColorCalculator.Node\ Border\ Color-Discrete\
Mapper.mapping.type=DiscreteMapping
+nodeBorderColorCalculator.Node\ Border\ Color-Discrete\
Mapper.visualPropertyType=NODE_BORDER_COLOR
+nodeFillColorCalculator.Nested\ Network\ Style-Node\ Color-Discrete\
Mapper.mapping.controller=has_nested_network
+nodeFillColorCalculator.Nested\ Network\ Style-Node\ Color-Discrete\
Mapper.mapping.controllerType=-1
+nodeFillColorCalculator.Nested\ Network\ Style-Node\ Color-Discrete\
Mapper.mapping.map.yes=255,255,255
+nodeFillColorCalculator.Nested\ Network\ Style-Node\ Color-Discrete\
Mapper.mapping.type=DiscreteMapping
+nodeFillColorCalculator.Nested\ Network\ Style-Node\ Color-Discrete\
Mapper.visualPropertyType=NODE_FILL_COLOR
+nodeFillColorCalculator.Node\ Color.mapping.controller=biopax.entity_type
+nodeFillColorCalculator.Node\ Color.mapping.controllerType=4
+nodeFillColorCalculator.Node\ Color.mapping.map.Complex=153,153,255
+nodeFillColorCalculator.Node\ Color.mapping.type=DiscreteMapping
+nodeFillColorCalculator.Node\ Color.visualPropertyType=NODE_FILL_COLOR
+nodeLabelCalculator.BasicPassThrough.mapping.controller=label
+nodeLabelCalculator.BasicPassThrough.mapping.type=PassThroughMapping
+nodeLabelCalculator.BasicPassThrough.visualPropertyType=NODE_LABEL
+nodeLabelCalculator.BioPAX\ Node\ Label.mapping.controller=biopax.node_label
+nodeLabelCalculator.BioPAX\ Node\ Label.mapping.type=PassThroughMapping
+nodeLabelCalculator.BioPAX\ Node\ Label.visualPropertyType=NODE_LABEL
+nodeLabelCalculator.Nested\ Network\ Style-Node\ Label-Passthrough\
Mapper.mapping.controller=ID
+nodeLabelCalculator.Nested\ Network\ Style-Node\ Label-Passthrough\
Mapper.mapping.type=PassThroughMapping
+nodeLabelCalculator.Nested\ Network\ Style-Node\ Label-Passthrough\
Mapper.visualPropertyType=NODE_LABEL
+nodeLabelCalculator.NodeLabel.mapping.controller=ID
+nodeLabelCalculator.NodeLabel.mapping.type=PassThroughMapping
+nodeLabelCalculator.NodeLabel.visualPropertyType=NODE_LABEL
+nodeLabelCalculator.Solid-Node\ Label-Passthrough\ Mapper.mapping.controller=ID
+nodeLabelCalculator.Solid-Node\ Label-Passthrough\
Mapper.mapping.type=PassThroughMapping
+nodeLabelCalculator.Solid-Node\ Label-Passthrough\
Mapper.visualPropertyType=NODE_LABEL
+nodeLabelCalculator.Universe-Node\ Label-Passthrough\
Mapper.mapping.controller=ID
+nodeLabelCalculator.Universe-Node\ Label-Passthrough\
Mapper.mapping.type=PassThroughMapping
+nodeLabelCalculator.Universe-Node\ Label-Passthrough\
Mapper.visualPropertyType=NODE_LABEL
+nodeLabelCalculator.id\ as\ node\ labels.mapping.controller=ID
+nodeLabelCalculator.id\ as\ node\ labels.mapping.type=PassThroughMapping
+nodeLabelCalculator.id\ as\ node\ labels.visualPropertyType=NODE_LABEL
+nodeLabelColor.Nested\ Network\ Style-Node\ Label\ Color-Discrete\
Mapper.mapping.controller=has_nested_network
+nodeLabelColor.Nested\ Network\ Style-Node\ Label\ Color-Discrete\
Mapper.mapping.controllerType=-1
+nodeLabelColor.Nested\ Network\ Style-Node\ Label\ Color-Discrete\
Mapper.mapping.map.yes=0,102,204
+nodeLabelColor.Nested\ Network\ Style-Node\ Label\ Color-Discrete\
Mapper.mapping.type=DiscreteMapping
+nodeLabelColor.Nested\ Network\ Style-Node\ Label\ Color-Discrete\
Mapper.visualPropertyType=NODE_LABEL_COLOR
+nodeLabelPositionCalculator.Nested\ Network\ Style-Node\ Label\
Position-Discrete\ Mapper.mapping.controller=has_nested_network
+nodeLabelPositionCalculator.Nested\ Network\ Style-Node\ Label\
Position-Discrete\ Mapper.mapping.controllerType=-1
+nodeLabelPositionCalculator.Nested\ Network\ Style-Node\ Label\
Position-Discrete\ Mapper.mapping.map.yes=SE,NW,c,0,0
+nodeLabelPositionCalculator.Nested\ Network\ Style-Node\ Label\
Position-Discrete\ Mapper.mapping.type=DiscreteMapping
+nodeLabelPositionCalculator.Nested\ Network\ Style-Node\ Label\
Position-Discrete\ Mapper.visualPropertyType=NODE_LABEL_POSITION
+nodeLineWidthCalculator.Nested\ Network\ Style-Node\ Line\ Width-Discrete\
Mapper.mapping.controller=has_nested_network
+nodeLineWidthCalculator.Nested\ Network\ Style-Node\ Line\ Width-Discrete\
Mapper.mapping.controllerType=-1
+nodeLineWidthCalculator.Nested\ Network\ Style-Node\ Line\ Width-Discrete\
Mapper.mapping.map.yes=5.0
+nodeLineWidthCalculator.Nested\ Network\ Style-Node\ Line\ Width-Discrete\
Mapper.mapping.type=DiscreteMapping
+nodeLineWidthCalculator.Nested\ Network\ Style-Node\ Line\ Width-Discrete\
Mapper.visualPropertyType=NODE_LINE_WIDTH
+nodeShapeCalculator.Nested\ Network\ Style-Node\ Shape-Discrete\
Mapper.mapping.controller=has_nested_network
+nodeShapeCalculator.Nested\ Network\ Style-Node\ Shape-Discrete\
Mapper.mapping.controllerType=-1
+nodeShapeCalculator.Nested\ Network\ Style-Node\ Shape-Discrete\
Mapper.mapping.map.yes=rect
+nodeShapeCalculator.Nested\ Network\ Style-Node\ Shape-Discrete\
Mapper.mapping.type=DiscreteMapping
+nodeShapeCalculator.Nested\ Network\ Style-Node\ Shape-Discrete\
Mapper.visualPropertyType=NODE_SHAPE
+nodeShapeCalculator.Node\ Shape.mapping.controller=biopax.entity_type
+nodeShapeCalculator.Node\ Shape.mapping.controllerType=4
+nodeShapeCalculator.Node\ Shape.mapping.map.Complex=hexagon
+nodeShapeCalculator.Node\ Shape.mapping.type=DiscreteMapping
+nodeShapeCalculator.Node\ Shape.visualPropertyType=NODE_SHAPE
+nodeUniformSizeCalculator.Nested\ Network\ Style-Node\ Size-Discrete\
Mapper.mapping.controller=has_nested_network
+nodeUniformSizeCalculator.Nested\ Network\ Style-Node\ Size-Discrete\
Mapper.mapping.controllerType=-1
+nodeUniformSizeCalculator.Nested\ Network\ Style-Node\ Size-Discrete\
Mapper.mapping.map.yes=60.0
+nodeUniformSizeCalculator.Nested\ Network\ Style-Node\ Size-Discrete\
Mapper.mapping.type=DiscreteMapping
+nodeUniformSizeCalculator.Nested\ Network\ Style-Node\ Size-Discrete\
Mapper.visualPropertyType=NODE_SIZE
+nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.boundaryvalues=2
+nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.bv0.domainvalue=0.0
+nodeUniformSizeCalculator.Node\ Size-Continuous\ Mapper.mapping.bv0.equal=10.0
+nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.bv0.greater=10.0
+nodeUniformSizeCalculator.Node\ Size-Continuous\ Mapper.mapping.bv0.lesser=
+nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.bv1.domainvalue=0.0
+nodeUniformSizeCalculator.Node\ Size-Continuous\ Mapper.mapping.bv1.equal=30.0
+nodeUniformSizeCalculator.Node\ Size-Continuous\ Mapper.mapping.bv1.greater=
+nodeUniformSizeCalculator.Node\ Size-Continuous\ Mapper.mapping.bv1.lesser=30.0
+nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.controller=Degree
+nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.interpolator=LinearNumberToNumberInterpolator
+nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.type=ContinuousMapping
+nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.visualPropertyType=NODE_SIZE
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