See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/2074/>
------------------------------------------ [...truncated 5135 lines...] [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/src/main/resources/xsd/networkList.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/generated-sources/xjc/networkList> generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/src/main/resources/xsd/networkList.xsd]> bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@19e542d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]]> Using java.util.ServiceLoader [INFO] File [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/src/main/resources/xsd/networkList.xsd]> was changed since the last build. [INFO] File [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/pom.xml]> was changed since the last build. [INFO] Checking up-to-date depends [[<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/src/main/resources/xsd/networkList.xsd,> <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/pom.xml]].> [INFO] Checking up-to-date produces [[]]. [INFO] Depends timestamp [1,354,927,725,000], produces timestamp [null]. [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/target/generated-sources/xjc/networkList].> [INFO] Cleaning package directories. [INFO] XJC writing: org/cytoscape/internal/io/networklist/Network.java [INFO] XJC writing: org/cytoscape/internal/io/networklist/NetworkList.java [INFO] XJC writing: org/cytoscape/internal/io/networklist/ObjectFactory.java [INFO] Finished execution. [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] [INFO] --- maven-dependency-plugin:2.1:unpack (copy-javahelp) @ swing-application-impl --- [INFO] Configured Artifact: org.cytoscape:help-impl:javahelp:3.0.1-SNAPSHOT:zip Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/help-impl/3.0.1-SNAPSHOT/help-impl-3.0.1-SNAPSHOT-javahelp.zip Downloading: http://code.cytoscape.org/nexus/content/repositories/biopax-snapshot/org/cytoscape/help-impl/3.0.1-SNAPSHOT/help-impl-3.0.1-SNAPSHOT-javahelp.zip Downloading: http://code.cytoscape.org/nexus/content/repositories/spring-osgi/org/cytoscape/help-impl/3.0.1-SNAPSHOT/help-impl-3.0.1-SNAPSHOT-javahelp.zip Downloading: http://code.cytoscape.org/nexus/content/repositories/spring-osgi-external/org/cytoscape/help-impl/3.0.1-SNAPSHOT/help-impl-3.0.1-SNAPSHOT-javahelp.zip Downloading: http://maven.itextpdf.com/org/cytoscape/help-impl/3.0.1-SNAPSHOT/help-impl-3.0.1-SNAPSHOT-javahelp.zip Downloading: http://code.cytoscape.org/nexus/content/repositories/zodiac-release/org/cytoscape/help-impl/3.0.1-SNAPSHOT/help-impl-3.0.1-SNAPSHOT-javahelp.zip Downloading: http://code.cytoscape.org/nexus/content/repositories/zodiac-milestone/org/cytoscape/help-impl/3.0.1-SNAPSHOT/help-impl-3.0.1-SNAPSHOT-javahelp.zip [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/swing-application-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$swing-application-impl/builds/2012-12-07_19-50-33/archive/org.cytoscape/swing-application-impl/3.0.1-SNAPSHOT/swing-application-impl-3.0.1-SNAPSHOT.pom ignoring exception during new ExecutedMojo null [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$impl-parent/builds/2012-12-07_19-50-33/archive/org.cytoscape/impl-parent/3.0.1-SNAPSHOT/impl-parent-3.0.1-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... FAILURE [14.559s] [INFO] Cytoscape BioPAX Impl (biopax-impl) ............... SKIPPED [INFO] Cytoscape Command Executor Impl (command-executor-impl) SKIPPED [INFO] Cytoscape Equations Impl (equations-impl) ......... SKIPPED [INFO] Cytoscape Model Impl Parent (model-impl-parent) ... SKIPPED [INFO] Cytoscape Model Impl (model-impl) ................. SKIPPED [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SKIPPED [INFO] Cytoscape View Model Impl (viewmodel-impl) ........ SKIPPED [INFO] Cytoscape Ding Impl Parent (ding-impl) ............ SKIPPED [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SKIPPED [INFO] org.cytoscape.work-impl ........................... SKIPPED [INFO] Cytoscape Core Task Impl (core-task-impl) ......... SKIPPED [INFO] Cytoscape CPath2 Impl (cpath2-impl) ............... SKIPPED [INFO] Cytoscape Groups Impl (group-impl) ................ SKIPPED [INFO] Cytoscape IO Impl Parent (io-impl-parent) ......... SKIPPED [INFO] Cytoscape IO Impl (io-impl) ....................... SKIPPED [INFO] Cytoscape Event Impl Parent (event-impl-parent) ... SKIPPED [INFO] Cytoscape Event Impl (event-impl) ................. SKIPPED [INFO] Cytoscape Layout Impl (layout-impl) ............... SKIPPED [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SKIPPED [INFO] Cytoscape Editor Impl (editor-impl) ............... SKIPPED [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SKIPPED [INFO] Cytoscape Filters Impl (filter-impl) .............. SKIPPED [INFO] Cytoscape GraphML Impl (graphml-impl) ............. SKIPPED [INFO] Cytoscape Group Data Impl (group-data-impl) ....... SKIPPED [INFO] Cytoscape Group View Impl (group-view-impl) ....... SKIPPED [INFO] Cytoscape IO Impl Performance (io-impl-performance) SKIPPED [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SKIPPED [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) . SKIPPED [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SKIPPED [INFO] Cytoscape Linkout Impl (linkout-impl) ............. SKIPPED [INFO] Cytoscape Log Swing Impl (log-swing-impl) ......... SKIPPED [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) . SKIPPED [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SKIPPED [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SKIPPED [INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) SKIPPED [INFO] Cytoscape Merge Impl (network-merge-impl) ......... SKIPPED [INFO] Cytoscape App Impl (app-impl) ..................... SKIPPED [INFO] Cytoscape Presentation Impl (presentation-impl) ... SKIPPED [INFO] Cytoscape Property Impl (property-impl) ........... SKIPPED [INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) . SKIPPED [INFO] Cytoscape PSI-MI Impl (psi-mi-impl) ............... SKIPPED [INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) SKIPPED [INFO] Cytoscape SBML Impl (sbml-impl) ................... SKIPPED [INFO] Cytoscape Search Impl (search-impl) ............... SKIPPED [INFO] Cytoscape Session Impl Parent (session-impl-parent) SKIPPED [INFO] Cytoscape Session Impl (session-impl) ............. SKIPPED [INFO] Cytoscape Datasource Impl (datasource-impl) ....... SKIPPED [INFO] org.cytoscape.work-headless-impl .................. SKIPPED [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) . SKIPPED [INFO] Cytoscape VizMap Impl (vizmap-impl) ............... SKIPPED [INFO] Cytoscape Application Impl (application-impl) ..... SKIPPED [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ....... SKIPPED [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SKIPPED [INFO] Cytoscape Work Swing Impl (work-swing-impl) ....... SKIPPED [INFO] Cytoscape Session Impl Integration Test (session-impl-integration-test) SKIPPED [INFO] Cytoscape Help Impl (help-impl) ................... SKIPPED [INFO] Cytoscape Swing Utility Impl (swing-util-impl) .... SKIPPED [INFO] Cytoscape Swing Application Impl (swing-application-impl) SKIPPED [INFO] Cytoscape Table Browser Impl (table-browser-impl) . SKIPPED [INFO] Cytoscape Table Import Impl (table-import-impl) ... SKIPPED [INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) SKIPPED [INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl) SKIPPED [INFO] Cytoscape Webservice Impl (webservice-impl) ....... SKIPPED [INFO] Cytoscape PSIQUIC Web Service Impl (webservice-psicquic-client-impl) SKIPPED [INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) SKIPPED [INFO] Cytoscape Welcome Screen Impl (welcome-impl) ...... SKIPPED [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SKIPPED [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) ... SKIPPED [INFO] Cytoscape Scripting Impl (scripting-impl) ......... SKIPPED [INFO] Cytoscape Headless Application Impl (headless-application-impl) SKIPPED [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 16.227s [INFO] Finished at: Fri Dec 07 19:50:52 GMT-05:00 2012 [INFO] Final Memory: 25M/70M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-dependency-plugin:2.1:unpack (copy-javahelp) on project swing-application-impl: Unable to find artifact. cause : Unable to find artifact. Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-dependency-plugin:2.1:unpack (copy-javahelp) on project swing-application-impl: Unable to find artifact. at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.MojoExecutor.executeForkedExecutions(MojoExecutor.java:365) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:199) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:662) Caused by: org.apache.maven.plugin.MojoExecutionException: Unable to find artifact. at org.apache.maven.plugin.dependency.fromConfiguration.AbstractFromConfigurationMojo.getArtifact(AbstractFromConfigurationMojo.java:250) at org.apache.maven.plugin.dependency.fromConfiguration.AbstractFromConfigurationMojo.getProcessedArtifactItems(AbstractFromConfigurationMojo.java:143) at org.apache.maven.plugin.dependency.fromConfiguration.UnpackMojo.getProcessedArtifactItems(UnpackMojo.java:138) at org.apache.maven.plugin.dependency.fromConfiguration.UnpackMojo.execute(UnpackMojo.java:88) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 31 more Caused by: org.apache.maven.artifact.resolver.ArtifactNotFoundException: Could not find artifact org.cytoscape:help-impl:zip:javahelp:3.0.1-SNAPSHOT in cytoscape_snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots/) Try downloading the file manually from the project website. Then, install it using the command: mvn install:install-file -DgroupId=org.cytoscape -DartifactId=help-impl -Dversion=3.0.1-SNAPSHOT -Dclassifier=javahelp -Dpackaging=zip -Dfile=/path/to/file Alternatively, if you host your own repository you can deploy the file there: mvn deploy:deploy-file -DgroupId=org.cytoscape -DartifactId=help-impl -Dversion=3.0.1-SNAPSHOT -Dclassifier=javahelp -Dpackaging=zip -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id] org.cytoscape:help-impl:zip:3.0.1-SNAPSHOT from the specified remote repositories: cytoscape_snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots/, releases=false, snapshots=true), cytoscape_releases (http://code.cytoscape.org/nexus/content/repositories/releases/, releases=true, snapshots=false), cytoscape_thirdparty (http://code.cytoscape.org/nexus/content/repositories/thirdparty/, releases=true, snapshots=false), cytoscape_biopax_release (http://code.cytoscape.org/nexus/content/repositories/biopax-release/, releases=true, snapshots=false), cytoscape_biopax_snapshot (http://code.cytoscape.org/nexus/content/repositories/biopax-snapshot/, releases=false, snapshots=true), ops4j-release (http://code.cytoscape.org/nexus/content/repositories/ops4j-release/, releases=true, snapshots=false), spring-osgi (http://code.cytoscape.org/nexus/content/repositories/spring-osgi/, releases=true, snapshots=true), spring-osgi-snapshots (http://code.cytoscape.org/nexus/content/repositories/spring-osgi-external/, releases=true, snapshots=true), itextpdf.com (http://maven.itextpdf.com/, releases=true, snapshots=true), zodiac-repository (http://code.cytoscape.org/nexus/content/repositories/zodiac-release/, releases=true, snapshots=true), zodiac-milestone-repository (http://code.cytoscape.org/nexus/content/repositories/zodiac-milestone/, releases=true, snapshots=true), sonatype-oss (http://code.cytoscape.org/nexus/content/repositories/sonatype-oss/, releases=true, snapshots=false), ebi-repo (http://code.cytoscape.org/nexus/content/repositories/ebi/, releases=true, snapshots=false), central (http://repo1.maven.org/maven2, releases=true, snapshots=false) at org.apache.maven.artifact.resolver.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:219) at org.apache.maven.artifact.resolver.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:157) at org.apache.maven.artifact.resolver.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:525) at org.apache.maven.plugin.dependency.fromConfiguration.AbstractFromConfigurationMojo.getArtifact(AbstractFromConfigurationMojo.java:242) ... 36 more Caused by: org.sonatype.aether.resolution.ArtifactResolutionException: Could not find artifact org.cytoscape:help-impl:zip:javahelp:3.0.1-SNAPSHOT in cytoscape_snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots/) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:541) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolveArtifacts(DefaultArtifactResolver.java:220) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolveArtifact(DefaultArtifactResolver.java:197) at org.sonatype.aether.impl.internal.DefaultRepositorySystem.resolveArtifact(DefaultRepositorySystem.java:323) at org.apache.maven.artifact.resolver.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:213) ... 39 more Caused by: org.sonatype.aether.transfer.ArtifactNotFoundException: Could not find artifact org.cytoscape:help-impl:zip:javahelp:3.0.1-SNAPSHOT in cytoscape_snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots/) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:945) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$4.wrap(WagonRepositoryConnector.java:940) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.flush(WagonRepositoryConnector.java:695) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.flush(WagonRepositoryConnector.java:689) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector.get(WagonRepositoryConnector.java:445) at org.sonatype.aether.impl.internal.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:460) ... 43 more Sending e-mails to: [email protected] Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to bad build status FAILURE -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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