See <http://code.cytoscape.org/jenkins/job/Cytoscape_2.X_application/427/>
------------------------------------------ [...truncated 7317 lines...] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.16 sec Running cytoscape.data.readers.InteractionsReaderTest Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 sec Running cytoscape.data.readers.CyAttributesReaderTest Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 sec Running cytoscape.data.readers.NNFReaderTest Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.035 sec Running cytoscape.data.readers.TextFileReaderTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 sec Running cytoscape.data.readers.GMLReaderTest Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.17 sec Running cytoscape.data.readers.MetadataParserTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec Running cytoscape.data.readers.CytoscapeSessionReaderTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.089 sec Running cytoscape.data.readers.FileImporterTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.222 sec Running cytoscape.data.NetworkDataTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.073 sec Running cytoscape.data.InteractionTest Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec Running cytoscape.data.SelectFilterTest Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec Running cytoscape.data.servers.BioDataServerTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.002 sec Running cytoscape.data.synonyms.ThesaurusTest Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec Running cytoscape.data.synonyms.AliasesTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.06 sec Running cytoscape.data.synonyms.readers.ThesaurusFlatFileReaderTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 sec Running cytoscape.data.CyNetworkTest Tests run: 26, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.253 sec Running cytoscape.data.SelectEventTest Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec Running cytoscape.data.CyAttributesUtilsTest Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.314 sec Running cytoscape.data.ontology.readers.OBOFlatFileReaderTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.069 sec Running cytoscape.data.ontology.readers.DBCrossReferenceReaderTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec Running cytoscape.data.ontology.OntologyTest Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.087 sec Running cytoscape.BugHideNodeEventFiringTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec Results : Tests run: 357, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [INFO] [INFO] --- maven-jar-plugin:2.3.1:jar (default-jar) @ application --- [INFO] Building jar: <http://code.cytoscape.org/jenkins/job/Cytoscape_2.X_application/ws/trunk/application/target/application-2.8.4-SNAPSHOT.jar> [INFO] [INFO] --- maven-javadoc-plugin:2.7:jar (attach-javadocs) @ application --- [INFO] Loading source files for package cytoscape... Loading source files for package cytoscape.visual... Loading source files for package cytoscape.visual.converter... Loading source files for package cytoscape.visual.mappings... Loading source files for package cytoscape.visual.mappings.continuous... Loading source files for package cytoscape.visual.mappings.discrete... Loading source files for package cytoscape.visual.mappings.rangecalculators... Loading source files for package cytoscape.visual.calculators... Loading source files for package cytoscape.visual.parsers... Loading source files for package cytoscape.visual.ui... Loading source files for package cytoscape.visual.ui.editors.continuous... Loading source files for package cytoscape.visual.ui.editors.discrete... Loading source files for package cytoscape.visual.ui.icon... Loading source files for package cytoscape.visual.properties... Loading source files for package cytoscape.visual.strokes... Loading source files for package cytoscape.visual.customgraphic... Loading source files for package cytoscape.visual.customgraphic.impl... Loading source files for package cytoscape.visual.customgraphic.impl.bitmap... Loading source files for package cytoscape.visual.customgraphic.impl.vector... Loading source files for package cytoscape.visual.customgraphic.paint... Loading source files for package cytoscape.visual.customgraphic.ui... Loading source files for package cytoscape.view... Loading source files for package cytoscape.view.cytopanels... Loading source files for package cytoscape.actions... Loading source files for package cytoscape.init... Loading source files for package cytoscape.plugin... Loading source files for package cytoscape.util... Loading source files for package cytoscape.util.swing... Loading source files for package cytoscape.util.export... Loading source files for package cytoscape.util.shadegrown... Loading source files for package cytoscape.util.undo... Loading source files for package cytoscape.logger... Loading source files for package cytoscape.giny... Loading source files for package cytoscape.command... Loading source files for package cytoscape.data... Loading source files for package cytoscape.data.writers... Loading source files for package cytoscape.data.annotation... Loading source files for package cytoscape.data.annotation.readers... Loading source files for package cytoscape.data.attr... Loading source files for package cytoscape.data.attr.util... Loading source files for package cytoscape.data.readers... Loading source files for package cytoscape.data.webservice... Loading source files for package cytoscape.data.webservice.util... Loading source files for package cytoscape.data.webservice.ui... Loading source files for package cytoscape.data.servers... Loading source files for package cytoscape.data.synonyms... Loading source files for package cytoscape.data.synonyms.readers... Loading source files for package cytoscape.data.ontology... Loading source files for package cytoscape.data.ontology.readers... Loading source files for package cytoscape.ding... Loading source files for package cytoscape.groups... Loading source files for package cytoscape.layout... Loading source files for package cytoscape.layout.algorithms... Loading source files for package cytoscape.layout.ui... Loading source files for package cytoscape.dialogs.plugins... Loading source files for package cytoscape.dialogs... Loading source files for package cytoscape.dialogs.logger... Loading source files for package cytoscape.dialogs.preferences... Loading source files for package cytoscape.generated... Loading source files for package cytoscape.bookmarks... Constructing Javadoc information... [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape_2.X_application/ws/trunk/application/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape_2.X_application/modules/cytoscape$application/builds/2012-12-09_20-10-28/archive/cytoscape/application/2.8.4-SNAPSHOT/application-2.8.4-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape_2.X_application/ws/trunk/application/target/application-2.8.4-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape_2.X_application/modules/cytoscape$application/builds/2012-12-09_20-10-28/archive/cytoscape/application/2.8.4-SNAPSHOT/application-2.8.4-SNAPSHOT.jar [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Parent POM .............................. SUCCESS [10.912s] [INFO] Cytoscape Core Libraries Parent POM ............... SUCCESS [0.861s] [INFO] commons-cli-1-x-cytocape-custom ................... SUCCESS [17.319s] [INFO] equations ......................................... SUCCESS [16.084s] [INFO] util-intr ......................................... SUCCESS [10.984s] [INFO] geom-spacial ...................................... SUCCESS [5.066s] [INFO] geom-rtree ........................................ SUCCESS [8.701s] [INFO] GINY API .......................................... SUCCESS [9.750s] [INFO] graph-fixed ....................................... SUCCESS [6.000s] [INFO] graph-dynamic ..................................... SUCCESS [16.820s] [INFO] nerius-math-xform ................................. SUCCESS [8.251s] [INFO] obo ............................................... SUCCESS [6.698s] [INFO] phoebe-dnd ........................................ SUCCESS [8.645s] [INFO] render-immed ...................................... SUCCESS [1:23.293s] [INFO] render-export ..................................... SUCCESS [4.702s] [INFO] render-stateful ................................... SUCCESS [10.871s] [INFO] task .............................................. SUCCESS [10.818s] [INFO] undo-support ...................................... SUCCESS [4.768s] [INFO] fing .............................................. SUCCESS [5.762s] [INFO] ding .............................................. SUCCESS [9.244s] [INFO] Cytoscape Documentation ........................... SUCCESS [41.765s] [INFO] Cytoscape Application ............................. FAILURE [1:53.914s] [INFO] Cytoscape Core Plugins Parent POM ................. SKIPPED [INFO] Advanced Network Merge ............................ SKIPPED [INFO] Automatic Layout .................................. SKIPPED [INFO] BioMart Client .................................... SKIPPED [INFO] BioPAX ............................................ SKIPPED [INFO] Editor ............................................ SKIPPED [INFO] Equation Functions ................................ SKIPPED [INFO] Manual Layout ..................................... SKIPPED [INFO] NCBI Client ....................................... SKIPPED [INFO] PSI-MI ............................................ SKIPPED [INFO] QuickFind ......................................... SKIPPED [INFO] RFilters .......................................... SKIPPED [INFO] SBML Reader ....................................... SKIPPED [INFO] Table Import ...................................... SKIPPED [INFO] Attribute Browser ................................. SKIPPED [INFO] cPath ............................................. SKIPPED [INFO] Pathway Commons plugin ............................ SKIPPED [INFO] Filters ........................................... SKIPPED [INFO] Linkout ........................................... SKIPPED [INFO] Core Commands Plugin .............................. SKIPPED [INFO] NetworkAnalyzer ................................... SKIPPED [INFO] Cytoscape Distribution ............................ SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7:30.051s [INFO] Finished at: Sun Dec 09 20:18:09 GMT-05:00 2012 [INFO] Final Memory: 42M/135M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-javadoc-plugin:2.7:jar (attach-javadocs) on project application: MavenReportException: Error while creating archive: Exit code: 137 - Killed Command line was: /opt/jdk1.6.0_32/jre/../bin/javadoc -J-Xmx2048m -J-Xmx2g @options @packages Refer to the generated Javadoc files in '<http://code.cytoscape.org/jenkins/job/Cytoscape_2.X_application/ws/trunk/application/target/apidocs'> dir. cause : MavenReportException: Error while creating archive: Exit code: 137 - Killed Command line was: /opt/jdk1.6.0_32/jre/../bin/javadoc -J-Xmx2048m -J-Xmx2g @options @packages Refer to the generated Javadoc files in '<http://code.cytoscape.org/jenkins/job/Cytoscape_2.X_application/ws/trunk/application/target/apidocs'> dir. Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-javadoc-plugin:2.7:jar (attach-javadocs) on project application: MavenReportException: Error while creating archive: Exit code: 137 - Killed Command line was: /opt/jdk1.6.0_32/jre/../bin/javadoc -J-Xmx2048m -J-Xmx2g @options @packages Refer to the generated Javadoc files in '<http://code.cytoscape.org/jenkins/job/Cytoscape_2.X_application/ws/trunk/application/target/apidocs'> dir. at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:662) Caused by: org.apache.maven.plugin.MojoExecutionException: MavenReportException: Error while creating archive: Exit code: 137 - Killed Command line was: /opt/jdk1.6.0_32/jre/../bin/javadoc -J-Xmx2048m -J-Xmx2g @options @packages Refer to the generated Javadoc files in '<http://code.cytoscape.org/jenkins/job/Cytoscape_2.X_application/ws/trunk/application/target/apidocs'> dir. at org.apache.maven.plugin.javadoc.JavadocJar.execute(JavadocJar.java:228) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Caused by: org.apache.maven.reporting.MavenReportException: Exit code: 137 - Killed Command line was: /opt/jdk1.6.0_32/jre/../bin/javadoc -J-Xmx2048m -J-Xmx2g @options @packages Refer to the generated Javadoc files in '<http://code.cytoscape.org/jenkins/job/Cytoscape_2.X_application/ws/trunk/application/target/apidocs'> dir. at org.apache.maven.plugin.javadoc.AbstractJavadocMojo.executeJavadocCommandLine(AbstractJavadocMojo.java:5021) at org.apache.maven.plugin.javadoc.AbstractJavadocMojo.executeReport(AbstractJavadocMojo.java:1964) at org.apache.maven.plugin.javadoc.JavadocJar.execute(JavadocJar.java:184) ... 29 more Sending e-mails to: [email protected] channel stopped -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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