See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/255/changes>
Changes: [paperwing] Added class for inter-app dependency management for issue #1644 ------------------------------------------ [...truncated 42045 lines...] [INFO] Forking Cytoscape PSIQUIC Web Service Impl (webservice-psicquic-client-impl) 3.1.0-SNAPSHOT [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (miriam) @ webservice-psicquic-client-impl --- ignoring exception during new ExecutedMojo null [INFO] [INFO] --- maven-source-plugin:2.1.2:aggregate (aggregate-source) @ network-merge-impl --- [INFO] [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/network-merge-impl/target/network-merge-impl-3.1.0-SNAPSHOT.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/network-merge-impl/3.1.0-SNAPSHOT/network-merge-impl-3.1.0-SNAPSHOT.jar [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/network-merge-impl/pom.xml> to /opt/tomcat-home/.m2/repository/org/cytoscape/network-merge-impl/3.1.0-SNAPSHOT/network-merge-impl-3.1.0-SNAPSHOT.pom [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/network-merge-impl/target/network-merge-impl-3.1.0-SNAPSHOT-sources.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/network-merge-impl/3.1.0-SNAPSHOT/network-merge-impl-3.1.0-SNAPSHOT-sources.jar [INFO] --- maven-install-plugin:2.4:install (default-install) @ network-merge-impl --- [INFO] [INFO] --- maven-bundle-plugin:2.3.7:install (default-install) @ network-merge-impl --- [INFO] Installing org/cytoscape/network-merge-impl/3.1.0-SNAPSHOT/network-merge-impl-3.1.0-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/network-merge-impl/3.1.0-SNAPSHOT/maven-metadata.xml [INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ network-merge-impl --- Downloaded: 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http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/network-merge-impl/3.1.0-SNAPSHOT/network-merge-impl-3.1.0-20121219.231320-6-sources.jar Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/network-merge-impl/3.1.0-SNAPSHOT/network-merge-impl-3.1.0-20121219.231320-6-sources.jar (133 KB at 2243.6 KB/sec) Uploading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/network-merge-impl/3.1.0-SNAPSHOT/maven-metadata.xml Uploaded: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/network-merge-impl/3.1.0-SNAPSHOT/maven-metadata.xml (995 B at 33.5 KB/sec) [INFO] [INFO] Remote OBR update disabled (enable with -DremoteOBR) [INFO] --- maven-bundle-plugin:2.3.7:deploy (default-deploy) @ network-merge-impl --- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/network-merge-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$network-merge-impl/builds/2012-12-19_18-05-55/archive/org.cytoscape/network-merge-impl/3.1.0-SNAPSHOT/network-merge-impl-3.1.0-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/network-merge-impl/target/network-merge-impl-3.1.0-SNAPSHOT.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$network-merge-impl/builds/2012-12-19_18-05-55/archive/org.cytoscape/network-merge-impl/3.1.0-20121219.231320-6/network-merge-impl-3.1.0-20121219.231320-6.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/network-merge-impl/target/network-merge-impl-3.1.0-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$network-merge-impl/builds/2012-12-19_18-05-55/archive/org.cytoscape/network-merge-impl/3.1.0-20121219.231320-6/network-merge-impl-3.1.0-20121219.231320-6-sources.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape App Impl (app-impl) 3.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/swing-app-api/3.1.0-SNAPSHOT/maven-metadata.xml Downloading: http://repository.springsource.com/maven/bundles/external/org/cytoscape/swing-app-api/3.1.0-SNAPSHOT/maven-metadata.xml Downloading: http://repository.springsource.com/maven/bundles/release/org/cytoscape/swing-app-api/3.1.0-SNAPSHOT/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/biopax-snapshot/org/cytoscape/swing-app-api/3.1.0-SNAPSHOT/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/spring-osgi/org/cytoscape/swing-app-api/3.1.0-SNAPSHOT/maven-metadata.xml Downloading: 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[INFO] Copying 5 resources [INFO] Copying 0 resource [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ app-impl --- [INFO] [INFO] Compiling 53 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/app-impl/target/classes> [INFO] --- maven-compiler-plugin:2.5.1:compile (default-compile) @ app-impl --- [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/AppParser.java>:[268,49] package __Unused__KarafArchiveApp does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/AppParser.java>:[270,44] package __Unused__KarafArchiveApp does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/AppParser.java>:[270,114] package __Unused__KarafArchiveApp does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/AppParser.java>:[299,33] package __Unused__KarafArchiveApp does not exist [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/AppParser.java>:[299,86] package __Unused__KarafArchiveApp does not exist [INFO] 5 errors [INFO] ------------------------------------------------------------- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/app-impl/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$app-impl/builds/2012-12-19_18-05-55/archive/org.cytoscape/app-impl/3.1.0-SNAPSHOT/app-impl-3.1.0-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... SUCCESS [35.481s] [INFO] Cytoscape BioPAX Impl (biopax-impl) ............... SUCCESS [15.656s] [INFO] Cytoscape Command Executor Impl (command-executor-impl) SUCCESS [4.740s] [INFO] Cytoscape Equations Impl (equations-impl) ......... SUCCESS [8.200s] [INFO] Cytoscape Model Impl Parent (model-impl-parent) ... SUCCESS [18.743s] [INFO] Cytoscape Model Impl (model-impl) ................. SUCCESS [9.283s] [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SUCCESS [19.457s] [INFO] Cytoscape View Model Impl (viewmodel-impl) ........ SUCCESS [5.385s] [INFO] Cytoscape Ding Impl Parent (ding-impl) ............ SUCCESS [20.045s] [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SUCCESS [33.708s] [INFO] org.cytoscape.work-impl ........................... SUCCESS [4.342s] [INFO] Cytoscape Core Task Impl (core-task-impl) ......... SUCCESS [8.512s] [INFO] Cytoscape CPath2 Impl (cpath2-impl) ............... SUCCESS [8.128s] [INFO] Cytoscape Groups Impl (group-impl) ................ SUCCESS [5.348s] [INFO] Cytoscape IO Impl Parent (io-impl-parent) ......... SUCCESS [20.561s] [INFO] Cytoscape IO Impl (io-impl) ....................... SUCCESS [10.671s] [INFO] Cytoscape Event Impl Parent (event-impl-parent) ... SUCCESS [20.603s] [INFO] Cytoscape Event Impl (event-impl) ................. SUCCESS [11.582s] [INFO] Cytoscape Layout Impl (layout-impl) ............... SUCCESS [6.792s] [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SUCCESS [12.797s] [INFO] Cytoscape Editor Impl (editor-impl) ............... SUCCESS [4.524s] [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SUCCESS [5.028s] [INFO] Cytoscape Filters Impl (filter-impl) .............. SUCCESS [5.448s] [INFO] Cytoscape GraphML Impl (graphml-impl) ............. SUCCESS [5.150s] [INFO] Cytoscape Group Data Impl (group-data-impl) ....... SUCCESS [4.344s] [INFO] Cytoscape Group View Impl (group-view-impl) ....... SUCCESS [4.337s] [INFO] Cytoscape IO Impl Performance (io-impl-performance) SUCCESS [11.596s] [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SUCCESS [5.112s] [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) . SUCCESS [4.341s] [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SUCCESS [4.056s] [INFO] Cytoscape Linkout Impl (linkout-impl) ............. SUCCESS [4.165s] [INFO] Cytoscape Log Swing Impl (log-swing-impl) ......... SUCCESS [6.459s] [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) . SUCCESS [4.668s] [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SUCCESS [6.457s] [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SUCCESS [6.412s] [INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) SUCCESS [6.033s] [INFO] Cytoscape Merge Impl (network-merge-impl) ......... SUCCESS [4.784s] [INFO] Cytoscape App Impl (app-impl) ..................... FAILURE [2.706s] [INFO] Cytoscape Presentation Impl (presentation-impl) ... SKIPPED [INFO] Cytoscape Property Impl (property-impl) ........... SKIPPED [INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) . SKIPPED [INFO] Cytoscape PSI-MI Impl (psi-mi-impl) ............... SKIPPED [INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) SKIPPED [INFO] Cytoscape SBML Impl (sbml-impl) ................... SKIPPED [INFO] Cytoscape Search Impl (search-impl) ............... SKIPPED [INFO] Cytoscape Session Impl Parent (session-impl-parent) SKIPPED [INFO] Cytoscape Session Impl (session-impl) ............. SKIPPED [INFO] Cytoscape Datasource Impl (datasource-impl) ....... SKIPPED [INFO] org.cytoscape.work-headless-impl .................. SKIPPED [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) . SKIPPED [INFO] Cytoscape VizMap Impl (vizmap-impl) ............... SKIPPED [INFO] Cytoscape Application Impl (application-impl) ..... SKIPPED [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ....... SKIPPED [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SKIPPED [INFO] Cytoscape Work Swing Impl (work-swing-impl) ....... SKIPPED [INFO] Cytoscape Session Impl Integration Test (session-impl-integration-test) SKIPPED [INFO] Cytoscape Help Impl (help-impl) ................... SKIPPED [INFO] Cytoscape Swing Utility Impl (swing-util-impl) .... SKIPPED [INFO] Cytoscape Swing Application Impl (swing-application-impl) SKIPPED [INFO] Cytoscape Table Browser Impl (table-browser-impl) . SKIPPED [INFO] Cytoscape Table Import Impl (table-import-impl) ... SKIPPED [INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) SKIPPED [INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl) SKIPPED [INFO] Cytoscape Webservice Impl (webservice-impl) ....... SKIPPED [INFO] Cytoscape PSIQUIC Web Service Impl (webservice-psicquic-client-impl) SKIPPED [INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) SKIPPED [INFO] Cytoscape Welcome Screen Impl (welcome-impl) ...... SKIPPED [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SKIPPED [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) ... SKIPPED [INFO] Cytoscape Scripting Impl (scripting-impl) ......... SKIPPED [INFO] Cytoscape Headless Application Impl (headless-application-impl) SKIPPED [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7:26.239s [INFO] Finished at: Wed Dec 19 18:13:24 GMT-05:00 2012 [INFO] Final Memory: 145M/347M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile (default-compile) on project app-impl: Compilation failure cause : Compilation failure Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile (default-compile) on project app-impl: Compilation failure at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:662) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:729) at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to bad build status FAILURE -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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