See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20GUI%20Distribution/173/>
------------------------------------------ [...truncated 33 lines...] AU assembly/src/main/resources/sampleData/galFiltered.xls AU assembly/src/main/resources/sampleData/galFilteredintAttr.xls A assembly/src/main/resources/sampleData/nestedNetworks.nnf A assembly/src/main/resources/sampleData/galFiltered.gml A assembly/src/main/resources/sampleData/BINDyeast.sif AU assembly/src/main/resources/sampleData/galFiltered.nodeAttrs.txt A assembly/src/main/resources/sampleData/galFiltered.sif A assembly/src/main/resources/sampleData/BIOGRID-ORGANISM-Rattus_norvegicus-3.1.92.mitab A assembly/src/main/resources/sampleData/galExpData.csv A assembly/src/main/resources/sampleData/galFiltered.xgmml AU assembly/src/main/resources/sampleData/galFiltered.nodeAttrTable.xlsx AU assembly/src/main/resources/sampleData/README.txt A assembly/src/main/resources/sampleData/galFiltered.graphml A assembly/src/main/resources/sampleData/galFiltered.csv A assembly/src/main/resources/sampleData/DNA_Damage_Bypass_Reactome_73893.owl A assembly/src/main/resources/sampleData/yeastHighQuality.sif A assembly/pom.xml A assembly/.settings A launcher A launcher/src A launcher/src/main A launcher/src/main/java A launcher/src/main/java/org A launcher/src/main/java/org/cytoscape A launcher/src/main/java/org/cytoscape/launcher A launcher/src/main/java/org/cytoscape/launcher/internal A launcher/src/main/java/org/cytoscape/launcher/internal/Launcher.java A launcher/pom.xml A launcher/.settings A branding A branding/src A branding/src/main A branding/src/main/resources A branding/src/main/resources/org A branding/src/main/resources/org/apache A branding/src/main/resources/org/apache/karaf A branding/src/main/resources/org/apache/karaf/branding A branding/src/main/resources/org/apache/karaf/branding/branding.properties.template A branding/src/main/etc A branding/src/main/etc/logo.txt A branding/pom.xml A branding/.settings A packaging A packaging/src A packaging/src/main A packaging/src/main/install4j A packaging/src/main/install4j/Cytoscape.install4j A packaging/src/main/images AU packaging/src/main/images/CytoscapeSplashScreen.png AU packaging/src/main/images/cytoscape3-icon-trans-32x32.png AU packaging/src/main/images/cytoscape3-file-icon-trans-128x128.icns AU packaging/src/main/images/cytoscape3-icon-trans-128x128.icns AU packaging/src/main/images/cytoscape3-icon-trans-16x16.png A packaging/pom.xml A packaging/README.txt A diagnostics A diagnostics/src A diagnostics/src/main A diagnostics/src/main/java A diagnostics/src/main/java/org A diagnostics/src/main/java/org/cytoscape A diagnostics/src/main/java/org/cytoscape/diagnostics A diagnostics/src/main/java/org/cytoscape/diagnostics/PerformanceDetails.java A diagnostics/src/main/java/org/cytoscape/diagnostics/SystemDetails.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/heuristics A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/heuristics/Heuristic.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/heuristics/WmicHeuristic.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/heuristics/SysctlHeuristic.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/heuristics/AbstractHeuristic.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/heuristics/ProcHeuristic.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/heuristics/UnameHeuristic.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/heuristics/Sw_VersHeuristic.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/heuristics/Vm_StatHeuristic.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/SystemInformation.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/Activator.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/SystemDetailsImpl.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/PerformanceTracker.java A diagnostics/src/main/java/org/cytoscape/diagnostics/internal/PerformanceDetailsBuilder.java A diagnostics/pom.xml A splash-launcher A splash-launcher/src A splash-launcher/src/main A splash-launcher/src/main/resources A splash-launcher/src/main/resources/images A splash-launcher/src/main/resources/images/versioned-svg A splash-launcher/src/main/resources/images/versioned-svg/CytoscapeSplashScreen.svg A splash-launcher/src/main/resources/images/versioned-svg/README.txt A splash-launcher/pom.xml A splash-launcher/.settings A cmdline-impl A cmdline-impl/src A cmdline-impl/src/main A cmdline-impl/src/main/java A cmdline-impl/src/main/java/org A cmdline-impl/src/main/java/org/cytoscape A cmdline-impl/src/main/java/org/cytoscape/cmdline A cmdline-impl/src/main/java/org/cytoscape/cmdline/internal A cmdline-impl/src/main/java/org/cytoscape/cmdline/internal/CommandLineArgsImpl.java A cmdline-impl/src/main/java/org/cytoscape/cmdline/internal/CyActivator.java A cmdline-impl/pom.xml A cmdline-impl/.settings A pom.xml A features A features/src A features/src/main A features/src/main/resources A features/src/main/resources/features.xml A features/pom.xml U . At revision 31086 no change for http://chianti.ucsd.edu/svn/core3/gui-distribution/trunk since the previous build Parsing POMs Failed to transfer Error transferring file: Connection timed out Failed to transfer Unable to locate resource in repository Failed to transfer Error transferring file: Connection reset Failed to transfer Error transferring file: Connection reset Failed to transfer Error transferring file: Connection reset Failed to transfer Error transferring file: Connection reset Failed to transfer Error transferring file: Connection reset [trunk] $ java -Djava.awt.headless=true -Xmx768M -XX:MaxPermSize=256M -cp /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.2.jar:/opt/maven/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /opt/maven /var/lib/tomcat6/webapps/jenkins/WEB-INF/lib/remoting-2.11.jar /opt/tomcat-home/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.2.jar 43963 <===[JENKINS REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20GUI%20Distribution/ws/trunk/pom.xml> deploy -Pall [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] Cytoscape Desktop Application Distribution [INFO] SplashScreen Launcher [INFO] Cytoscape Launcher [INFO] Cytoscape Command Line Provider Implementation [INFO] Cytoscape Diagnostics [INFO] Cytoscape Branding [INFO] Cytoscape Feature Repository [INFO] Cytoscape Karaf Distribution [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Desktop Application Distribution 3.1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ ignoring exception during new ExecutedMojo null log4j:WARN No appenders could be found for logger (org.apache.commons.beanutils.converters.BooleanConverter). log4j:WARN Please initialize the log4j system properly. [INFO] [INFO] --- maven-source-plugin:2.1.2:jar (attach-sources) @ parent --- [INFO] [INFO] --- maven-install-plugin:2.3.1:install (default-install) @ parent --- [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20GUI%20Distribution/ws/trunk/pom.xml> to /opt/tomcat-home/.m2/repository/org/cytoscape/distribution/parent/3.1.0-SNAPSHOT/parent-3.1.0-SNAPSHOT.pom [INFO] [INFO] --- maven-deploy-plugin:2.5:deploy (default-deploy) @ parent --- Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/distribution/parent/3.1.0-SNAPSHOT/maven-metadata.xml [WARNING] Could not transfer metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20GUI%20Distribution/ws/trunk/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 GUI Distribution/modules/org.cytoscape.distribution$parent/builds/2013-01-26_20-15-43/archive/org.cytoscape.distribution/parent/3.1.0-SNAPSHOT/parent-3.1.0-SNAPSHOT.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Desktop Application Distribution ........ FAILURE [7:01.142s] [INFO] SplashScreen Launcher ............................. SKIPPED [INFO] Cytoscape Launcher ................................ SKIPPED [INFO] Cytoscape Command Line Provider Implementation .... SKIPPED [INFO] Cytoscape Diagnostics ............................. SKIPPED [INFO] Cytoscape Branding ................................ SKIPPED [INFO] Cytoscape Feature Repository ...................... SKIPPED [INFO] Cytoscape Karaf Distribution ...................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 7:02.214s [INFO] Finished at: Sat Jan 26 20:22:47 GMT-05:00 2013 [INFO] Final Memory: 5M/15M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-deploy-plugin:2.5:deploy (default-deploy) on project parent: Failed to retrieve remote metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml: Could not transfer metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset cause : Failed to retrieve remote metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml: Could not transfer metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-deploy-plugin:2.5:deploy (default-deploy) on project parent: Failed to retrieve remote metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml: Could not transfer metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:662) Caused by: org.apache.maven.plugin.MojoExecutionException: Failed to retrieve remote metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml: Could not transfer metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset at org.apache.maven.plugin.deploy.DeployMojo.execute(DeployMojo.java:189) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Caused by: org.apache.maven.artifact.deployer.ArtifactDeploymentException: Failed to retrieve remote metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml: Could not transfer metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset at org.apache.maven.artifact.deployer.DefaultArtifactDeployer.deploy(DefaultArtifactDeployer.java:141) at org.apache.maven.plugin.deploy.DeployMojo.execute(DeployMojo.java:148) ... 29 more Caused by: org.sonatype.aether.deployment.DeploymentException: Failed to retrieve remote metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml: Could not transfer metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset at org.sonatype.aether.impl.internal.DefaultDeployer.upload(DefaultDeployer.java:407) at org.sonatype.aether.impl.internal.DefaultDeployer.deploy(DefaultDeployer.java:260) at org.sonatype.aether.impl.internal.DefaultDeployer.deploy(DefaultDeployer.java:215) at org.sonatype.aether.impl.internal.DefaultRepositorySystem.deploy(DefaultRepositorySystem.java:480) at org.apache.maven.artifact.deployer.DefaultArtifactDeployer.deploy(DefaultArtifactDeployer.java:137) ... 30 more Caused by: org.sonatype.aether.transfer.MetadataTransferException: Could not transfer metadata org.cytoscape.distribution:parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$3.wrap(WagonRepositoryConnector.java:932) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$3.wrap(WagonRepositoryConnector.java:923) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.flush(WagonRepositoryConnector.java:695) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.flush(WagonRepositoryConnector.java:689) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector.get(WagonRepositoryConnector.java:445) at org.sonatype.aether.impl.internal.DefaultDeployer.upload(DefaultDeployer.java:379) ... 34 more Caused by: org.apache.maven.wagon.TransferFailedException: Error transferring file: Connection reset at org.apache.maven.wagon.providers.http.LightweightHttpWagon.fillInputData(LightweightHttpWagon.java:143) at org.apache.maven.wagon.StreamWagon.getInputStream(StreamWagon.java:116) at org.apache.maven.wagon.StreamWagon.getIfNewer(StreamWagon.java:88) at org.apache.maven.wagon.StreamWagon.get(StreamWagon.java:61) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.run(WagonRepositoryConnector.java:608) at org.sonatype.aether.util.concurrency.RunnableErrorForwarder$1.run(RunnableErrorForwarder.java:64) ... 3 more Caused by: java.net.SocketException: Connection reset at java.net.SocketInputStream.read(SocketInputStream.java:168) at java.io.BufferedInputStream.fill(BufferedInputStream.java:218) at java.io.BufferedInputStream.read1(BufferedInputStream.java:258) at java.io.BufferedInputStream.read(BufferedInputStream.java:317) at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:690) at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:633) at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:655) at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1195) at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:379) at org.apache.maven.wagon.providers.http.LightweightHttpWagon.fillInputData(LightweightHttpWagon.java:115) ... 8 more Sending e-mails to: [email protected] channel stopped -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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