See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/270/>
------------------------------------------ [...truncated 6839 lines...] [INFO] images/ximian/stock_new-spreadsheet.png already added, skipping [INFO] images/ximian/stock_new-spreadsheet-48.png already added, skipping [INFO] images/ximian/data_sources_trans.png already added, skipping [INFO] images/ximian/network.png already added, skipping [INFO] images/ximian/stock_dialog-info-32.png already added, skipping [INFO] images/ximian/stock_close-16.png already added, skipping [INFO] images/ximian/stock_data-sources-modified-16.png already added, skipping [INFO] images/ximian/stock_navigator-list-box-toggle-16.png already added, skipping [INFO] images/ximian/stock_new-text-32.png already added, skipping [INFO] images/ximian/stock_form-radio-16.png already added, skipping [INFO] images/ximian/stock_new-spreadsheet-16.png already added, skipping [INFO] images/ximian/stock_interaction.png already added, skipping [INFO] images/ximian/stock_form-checkbox-16.png already added, skipping [INFO] images/ximian/stock_toggle-info-16.png already added, skipping [INFO] images/ximian/stock_right-16.png already added, skipping [INFO] images/ximian/stock_format-scientific-16.png already added, skipping [INFO] images/ximian/stock_internet-16.png already added, skipping [INFO] images/ximian/stock_3d-light-on-16.png already added, skipping [INFO] images/ximian/stock_3d-light-16.png already added, skipping [INFO] images/ximian/stock_font-16.png already added, skipping [INFO] images/ximian/stock_3d-apply-16.png already added, skipping [INFO] images/ximian/stock_about-16.png already added, skipping [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] org/cytoscape/view already added, skipping [INFO] org/cytoscape/view/vizmap already added, skipping [INFO] org/cytoscape/view/vizmap/gui already added, skipping [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] org/cytoscape/io already added, skipping [INFO] META-INF already added, skipping [INFO] META-INF/spring already added, skipping [INFO] images already added, skipping [INFO] META-INF/spring/bundle-context.xml-legacy already added, skipping [INFO] META-INF/spring/bundle-context-osgi.xml-legacy already added, skipping [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] META-INF already added, skipping [INFO] META-INF/spring already added, skipping [INFO] images already added, skipping [INFO] META-INF/spring/bundle-context.xml-legacy already added, skipping [INFO] META-INF/spring/bundle-context-osgi.xml-legacy already added, skipping [INFO] images/networkImportIcon.png already added, skipping [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] org/cytoscape/webservice already added, skipping [INFO] META-INF already added, skipping [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] org/cytoscape/webservice already added, skipping [INFO] org/cytoscape/webservice/psicquic already added, skipping [INFO] META-INF/sun-jaxb.episode already added, skipping [INFO] META-INF/sun-jaxb.episode already added, skipping [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] images already added, skipping [INFO] images/Icons already added, skipping [INFO] images/logo.png already added, skipping [INFO] images/background.png already added, skipping [INFO] images/Icons/open_session.png already added, skipping [INFO] images/Icons/net_file_import_small.png already added, skipping [INFO] images/Icons/net_db_import_small.png already added, skipping [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] org/cytoscape/internal already added, skipping [INFO] org/cytoscape/internal/CyActivator.java already added, skipping [INFO] org already added, skipping [INFO] org/cytoscape already added, skipping [INFO] org/cytoscape/cmdline already added, skipping [INFO] [INFO] --- maven-install-plugin:2.3.1:install (default-install) @ impl-parent --- [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/pom.xml> to /opt/tomcat-home/.m2/repository/org/cytoscape/impl-parent/3.1.0-SNAPSHOT/impl-parent-3.1.0-SNAPSHOT.pom [INFO] Installing <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/target/impl-parent-3.1.0-SNAPSHOT-sources.jar> to /opt/tomcat-home/.m2/repository/org/cytoscape/impl-parent/3.1.0-SNAPSHOT/impl-parent-3.1.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-deploy-plugin:2.5:deploy (default-deploy) @ impl-parent --- Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/cytoscape/impl-parent/3.1.0-SNAPSHOT/maven-metadata.xml [WARNING] Could not transfer metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$impl-parent/builds/2013-01-26_20-26-38/archive/org.cytoscape/impl-parent/3.1.0-SNAPSHOT/impl-parent-3.1.0-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/ws/trunk/target/impl-parent-3.1.0-SNAPSHOT-sources.jar> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$impl-parent/builds/2013-01-26_20-26-38/archive/org.cytoscape/impl-parent/3.1.0-SNAPSHOT/impl-parent-3.1.0-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... FAILURE [12:34:02.028s] [INFO] Cytoscape BioPAX Impl (biopax-impl) ............... SKIPPED [INFO] Cytoscape Command Executor Impl (command-executor-impl) SKIPPED [INFO] Cytoscape Equations Impl (equations-impl) ......... SKIPPED [INFO] Cytoscape Model Impl Parent (model-impl-parent) ... SKIPPED [INFO] Cytoscape Model Impl (model-impl) ................. SKIPPED [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SKIPPED [INFO] Cytoscape View Model Impl (viewmodel-impl) ........ SKIPPED [INFO] Cytoscape Ding Impl Parent (ding-impl) ............ SKIPPED [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SKIPPED [INFO] org.cytoscape.work-impl ........................... SKIPPED [INFO] Cytoscape Core Task Impl (core-task-impl) ......... SKIPPED [INFO] Cytoscape CPath2 Impl (cpath2-impl) ............... SKIPPED [INFO] Cytoscape Groups Impl (group-impl) ................ SKIPPED [INFO] Cytoscape IO Impl Parent (io-impl-parent) ......... SKIPPED [INFO] Cytoscape IO Impl (io-impl) ....................... SKIPPED [INFO] Cytoscape Event Impl Parent (event-impl-parent) ... SKIPPED [INFO] Cytoscape Event Impl (event-impl) ................. SKIPPED [INFO] Cytoscape Layout Impl (layout-impl) ............... SKIPPED [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SKIPPED [INFO] Cytoscape Editor Impl (editor-impl) ............... SKIPPED [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SKIPPED [INFO] Cytoscape Filters Impl (filter-impl) .............. SKIPPED [INFO] Cytoscape GraphML Impl (graphml-impl) ............. SKIPPED [INFO] Cytoscape Group Data Impl (group-data-impl) ....... SKIPPED [INFO] Cytoscape Group View Impl (group-view-impl) ....... SKIPPED [INFO] Cytoscape IO Impl Performance (io-impl-performance) SKIPPED [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SKIPPED [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) . SKIPPED [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SKIPPED [INFO] Cytoscape Linkout Impl (linkout-impl) ............. SKIPPED [INFO] Cytoscape Log Swing Impl (log-swing-impl) ......... SKIPPED [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) . SKIPPED [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SKIPPED [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SKIPPED [INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) SKIPPED [INFO] Cytoscape Merge Impl (network-merge-impl) ......... SKIPPED [INFO] Cytoscape App Impl (app-impl) ..................... SKIPPED [INFO] Cytoscape Presentation Impl (presentation-impl) ... SKIPPED [INFO] Cytoscape Property Impl (property-impl) ........... SKIPPED [INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) . SKIPPED [INFO] Cytoscape PSI-MI Impl (psi-mi-impl) ............... SKIPPED [INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) SKIPPED [INFO] Cytoscape SBML Impl (sbml-impl) ................... SKIPPED [INFO] Cytoscape Search Impl (search-impl) ............... SKIPPED [INFO] Cytoscape Session Impl Parent (session-impl-parent) SKIPPED [INFO] Cytoscape Session Impl (session-impl) ............. SKIPPED [INFO] Cytoscape Datasource Impl (datasource-impl) ....... SKIPPED [INFO] org.cytoscape.work-headless-impl .................. SKIPPED [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) . SKIPPED [INFO] Cytoscape VizMap Impl (vizmap-impl) ............... SKIPPED [INFO] Cytoscape Application Impl (application-impl) ..... SKIPPED [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ....... SKIPPED [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SKIPPED [INFO] Cytoscape Work Swing Impl (work-swing-impl) ....... SKIPPED [INFO] Cytoscape Session Impl Integration Test (session-impl-integration-test) SKIPPED [INFO] Cytoscape Help Impl (help-impl) ................... SKIPPED [INFO] Cytoscape Swing Utility Impl (swing-util-impl) .... SKIPPED [INFO] Cytoscape Swing Application Impl (swing-application-impl) SKIPPED [INFO] Cytoscape Table Browser Impl (table-browser-impl) . SKIPPED [INFO] Cytoscape Table Import Impl (table-import-impl) ... SKIPPED [INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) SKIPPED [INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl) SKIPPED [INFO] Cytoscape Webservice Impl (webservice-impl) ....... SKIPPED [INFO] Cytoscape PSIQUIC Web Service Impl (webservice-psicquic-client-impl) SKIPPED [INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) SKIPPED [INFO] Cytoscape Welcome Screen Impl (welcome-impl) ...... SKIPPED [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SKIPPED [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) ... SKIPPED [INFO] Cytoscape Scripting Impl (scripting-impl) ......... SKIPPED [INFO] Cytoscape Headless Application Impl (headless-application-impl) SKIPPED [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 12:34:09.840s [INFO] Finished at: Sun Jan 27 09:00:51 GMT-05:00 2013 [INFO] Final Memory: 23M/111M [INFO] ------------------------------------------------------------------------ mavenExecutionResult exceptions not empty message : Failed to execute goal org.apache.maven.plugins:maven-deploy-plugin:2.5:deploy (default-deploy) on project impl-parent: Failed to retrieve remote metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml: Could not transfer metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset cause : Failed to retrieve remote metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml: Could not transfer metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset Stack trace : org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-deploy-plugin:2.5:deploy (default-deploy) on project impl-parent: Failed to retrieve remote metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml: Could not transfer metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158) at hudson.maven.Maven3Builder.call(Maven3Builder.java:112) at hudson.maven.Maven3Builder.call(Maven3Builder.java:70) at hudson.remoting.UserRequest.perform(UserRequest.java:118) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:287) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:662) Caused by: org.apache.maven.plugin.MojoExecutionException: Failed to retrieve remote metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml: Could not transfer metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset at org.apache.maven.plugin.deploy.DeployMojo.execute(DeployMojo.java:189) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Caused by: org.apache.maven.artifact.deployer.ArtifactDeploymentException: Failed to retrieve remote metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml: Could not transfer metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset at org.apache.maven.artifact.deployer.DefaultArtifactDeployer.deploy(DefaultArtifactDeployer.java:141) at org.apache.maven.plugin.deploy.DeployMojo.execute(DeployMojo.java:148) ... 29 more Caused by: org.sonatype.aether.deployment.DeploymentException: Failed to retrieve remote metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml: Could not transfer metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset at org.sonatype.aether.impl.internal.DefaultDeployer.upload(DefaultDeployer.java:407) at org.sonatype.aether.impl.internal.DefaultDeployer.deploy(DefaultDeployer.java:260) at org.sonatype.aether.impl.internal.DefaultDeployer.deploy(DefaultDeployer.java:215) at org.sonatype.aether.impl.internal.DefaultRepositorySystem.deploy(DefaultRepositorySystem.java:480) at org.apache.maven.artifact.deployer.DefaultArtifactDeployer.deploy(DefaultArtifactDeployer.java:137) ... 30 more Caused by: org.sonatype.aether.transfer.MetadataTransferException: Could not transfer metadata org.cytoscape:impl-parent:3.1.0-SNAPSHOT/maven-metadata.xml from/to snapshots (http://code.cytoscape.org/nexus/content/repositories/snapshots): Error transferring file: Connection reset at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$3.wrap(WagonRepositoryConnector.java:932) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$3.wrap(WagonRepositoryConnector.java:923) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.flush(WagonRepositoryConnector.java:695) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.flush(WagonRepositoryConnector.java:689) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector.get(WagonRepositoryConnector.java:445) at org.sonatype.aether.impl.internal.DefaultDeployer.upload(DefaultDeployer.java:379) ... 34 more Caused by: org.apache.maven.wagon.TransferFailedException: Error transferring file: Connection reset at org.apache.maven.wagon.providers.http.LightweightHttpWagon.fillInputData(LightweightHttpWagon.java:143) at org.apache.maven.wagon.StreamWagon.getInputStream(StreamWagon.java:116) at org.apache.maven.wagon.StreamWagon.getIfNewer(StreamWagon.java:88) at org.apache.maven.wagon.StreamWagon.get(StreamWagon.java:61) at org.sonatype.aether.connector.wagon.WagonRepositoryConnector$GetTask.run(WagonRepositoryConnector.java:608) at org.sonatype.aether.util.concurrency.RunnableErrorForwarder$1.run(RunnableErrorForwarder.java:64) ... 3 more Caused by: java.net.SocketException: Connection reset at java.net.SocketInputStream.read(SocketInputStream.java:168) at java.io.BufferedInputStream.fill(BufferedInputStream.java:218) at java.io.BufferedInputStream.read1(BufferedInputStream.java:258) at java.io.BufferedInputStream.read(BufferedInputStream.java:317) at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:690) at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:633) at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:655) at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1195) at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:379) at org.apache.maven.wagon.providers.http.LightweightHttpWagon.fillInputData(LightweightHttpWagon.java:115) ... 8 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to bad build status FAILURE -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en. For more options, visit https://groups.google.com/groups/opt_out.
