Author: pwang
Date: 2013-03-01 14:17:06 -0800 (Fri, 01 Mar 2013)
New Revision: 31147
Modified:
csplugins/trunk/ucsd/kono/bingo-impl/src/main/java/bingo/internal/DisplayBiNGOWindow.java
csplugins/trunk/ucsd/kono/bingo-impl/src/main/java/bingo/internal/SettingsPanelActionListener.java
Log:
Updated
Modified:
csplugins/trunk/ucsd/kono/bingo-impl/src/main/java/bingo/internal/DisplayBiNGOWindow.java
===================================================================
---
csplugins/trunk/ucsd/kono/bingo-impl/src/main/java/bingo/internal/DisplayBiNGOWindow.java
2013-03-01 21:57:21 UTC (rev 31146)
+++
csplugins/trunk/ucsd/kono/bingo-impl/src/main/java/bingo/internal/DisplayBiNGOWindow.java
2013-03-01 22:17:06 UTC (rev 31147)
@@ -78,7 +78,7 @@
public class DisplayBiNGOWindow {
- private static final String[] NODE_COL_NAMES = { "pValue",
"adjustedPValue", "x", "X", "n", "N", "description",
+ private static final String[] NODE_COL_NAMES = { "pValue",
"adjustedPValue", "xx", "X", "nn", "N", "description",
"nodeFillColor", "nodeSize", "nodeType", "nodeFontSize"
};
/**
@@ -272,7 +272,7 @@
taskMonitor.setProgress(1.0);
taskMonitor.setStatusMessage("Network view successfully
create for: "
- +
network.getDefaultNetworkTable().getRow(network));
+ +
network.getDefaultNetworkTable().getRow(network.getSUID()));
}
}
@@ -508,12 +508,12 @@
//node.getCyRow().set("nodeType_" + clusterName, shape);
//node.getCyRow().set("nodeFontSize_" + clusterName,
14);
- CyRow row = network.getDefaultNodeTable().getRow(node);
+ CyRow row =
network.getDefaultNodeTable().getRow(node.getSUID());
row.set("pValue_" + clusterName, pValue);
row.set("adjustedPValue_" + clusterName, adj_pValue);
- row.set("x_" + clusterName, smallX);
+ row.set("xx_" + clusterName, smallX);
row.set("X_" + clusterName, bigX);
- row.set("n_" + clusterName, smallN);
+ row.set("nn_" + clusterName, smallN);
row.set("N_" + clusterName, bigN);
row.set("description_" + clusterName, description);
row.set("nodeFillColor_" + clusterName, color);
@@ -549,7 +549,7 @@
final List<CyEdge> edgeList = network.getEdgeList();
for (final CyEdge edge : edgeList) {
//edge.getCyRow().set("edgeType_" + clusterName,
"black");
-
network.getDefaultEdgeTable().getRow(edge).set("edgeType_" + clusterName,
"black");
+
network.getDefaultEdgeTable().getRow(edge.getSUID()).set("edgeType_" +
clusterName, "black");
}
}
}
Modified:
csplugins/trunk/ucsd/kono/bingo-impl/src/main/java/bingo/internal/SettingsPanelActionListener.java
===================================================================
---
csplugins/trunk/ucsd/kono/bingo-impl/src/main/java/bingo/internal/SettingsPanelActionListener.java
2013-03-01 21:57:21 UTC (rev 31146)
+++
csplugins/trunk/ucsd/kono/bingo-impl/src/main/java/bingo/internal/SettingsPanelActionListener.java
2013-03-01 22:17:06 UTC (rev 31147)
@@ -596,7 +596,7 @@
if (params.getStatus() == false) {
AnnotationParser annParser =
params.initializeAnnotationParser();
// TaskManager taskManager = adapter.getTaskManager();
- System.out.println("\nCalling annotation parser...");
+// System.out.println("\nCalling annotation parser...");
// taskManager.execute(new
GenericTaskFactory(annParser).createTaskIterator());
try {
annParser.calculate();
@@ -607,7 +607,7 @@
// TODO Auto-generated catch block
e.printStackTrace();
}
- System.out.println("Calling annotation
parser...DONE!!");
+// System.out.println("Calling annotation
parser...DONE!!");
if (annParser.getStatus()) {
params.setAnnotation(annParser.getAnnotation());
params.setOntology(annParser.getOntology());
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