Branch: refs/heads/feature/json-support
Home: https://github.com/cytoscape/cytoscape-impl
Commit: 3df74bbc5c680171fc825acf568f45e4b72735f1
https://github.com/cytoscape/cytoscape-impl/commit/3df74bbc5c680171fc825acf568f45e4b72735f1
Author: Christian Lopes <[email protected]>
Date: 2013-08-21 (Wed, 21 Aug 2013)
Changed paths:
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/StrokeIcon.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java
Log Message:
-----------
Refs #1969: Fixed Arrow icons on the Continuous-to-Discrete Mapping Editor.
Commit: bc8a38beb9078871e2a72ec9555e9ed8b5c2b46c
https://github.com/cytoscape/cytoscape-impl/commit/bc8a38beb9078871e2a72ec9555e9ed8b5c2b46c
Author: Scooter Morris <[email protected]>
Date: 2013-08-21 (Wed, 21 Aug 2013)
Changed paths:
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work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/BoundedHandler.java
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work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/JDialogTunableMutator.java
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work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/JPanelTunableMutator.java
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work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/ListMultipleHandler.java
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work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/ListSingleHandler.java
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work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/mySlider.java
Log Message:
-----------
Implementation of change listeners for Bounded and List Tunables and
implementation of the RequestsUIHelp and TunableUIHelper interfaces
Change-Id: Ic45d74e860c2b155ec04a68d2c711683ab596455
Commit: f4606b18ef77d9fc2e630da9fb27f39d3401435c
https://github.com/cytoscape/cytoscape-impl/commit/f4606b18ef77d9fc2e630da9fb27f39d3401435c
Author: rodche <[email protected]>
Date: 2013-08-21 (Wed, 21 Aug 2013)
Changed paths:
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biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/BioPaxViewTracker.java
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biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/BioPaxDetailsPanel.java
Log Message:
-----------
added TODOs...
Commit: edefca988e1615ac58d1e9f5028e66de3c8cfc37
https://github.com/cytoscape/cytoscape-impl/commit/edefca988e1615ac58d1e9f5028e66de3c8cfc37
Author: rodche <[email protected]>
Date: 2013-08-21 (Wed, 21 Aug 2013)
Changed paths:
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biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/DisplayBioPaxXmlTask.java
Log Message:
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Deprecated an old task
Commit: a022f16a023533bc8902fa2255fe7052fbf77509
https://github.com/cytoscape/cytoscape-impl/commit/a022f16a023533bc8902fa2255fe7052fbf77509
Author: rodche <[email protected]>
Date: 2013-08-21 (Wed, 21 Aug 2013)
Changed paths:
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biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/BioPaxContainer.java
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biopax-impl/src/main/resources/org/cytoscape/biopax/internal/view/binary_legend.html
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cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/cytoscape/BinarySifVisualStyleUtil.java
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cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/ExecuteGetRecordByCPathId.java
Log Message:
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Fixes related to specific SIF views (created from pathwaycommons.org data) in
the biopax and cpath2 core plugins.
Commit: 8c7849c5a5fbde571b0a78f1d572831f1795988a
https://github.com/cytoscape/cytoscape-impl/commit/8c7849c5a5fbde571b0a78f1d572831f1795988a
Author: rodche <[email protected]>
Date: 2013-08-21 (Wed, 21 Aug 2013)
Changed paths:
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biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/BioPaxViewTracker.java
Log Message:
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Fixing a bug with displaying a node's info in the Results Panel for the SIF
views generated by CyPath2 app and cpath2-impl core app.
Commit: 69b1aec143ce75eb68be0cfa2da43b3788c210df
https://github.com/cytoscape/cytoscape-impl/commit/69b1aec143ce75eb68be0cfa2da43b3788c210df
Author: Scooter Morris <[email protected]>
Date: 2013-08-22 (Thu, 22 Aug 2013)
Changed paths:
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/BoundedHandler.java
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work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/ListMultipleHandler.java
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/ListSingleHandler.java
Log Message:
-----------
Simplify List and Bounded listeners
Change-Id: I2ff5d90e3844caa0e49473b13eedc626cc9007a3
Commit: abca09abac3fb68d229d817e5f32385e24546459
https://github.com/cytoscape/cytoscape-impl/commit/abca09abac3fb68d229d817e5f32385e24546459
Author: rodche <[email protected]>
Date: 2013-08-22 (Thu, 22 Aug 2013)
Changed paths:
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cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/ExecuteGetRecordByCPathId.java
Log Message:
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Made the eastern Results Panel display correct Visual Legend HTML for SIF
networks generated from Pathway Commons data.
Commit: 3abf76036cfb296c374f58c14f14499560a5c6cb
https://github.com/cytoscape/cytoscape-impl/commit/3abf76036cfb296c374f58c14f14499560a5c6cb
Author: Scooter Morris <[email protected]>
Date: 2013-08-23 (Fri, 23 Aug 2013)
Changed paths:
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/JDialogTunableMutator.java
Log Message:
-----------
Clear the handler and title caches when we reset the context
Change-Id: Ieaf0950557421c6c7f0bdf43d07b168e95233372
Commit: 4c06e7adb816d268926fcb32a0557e0194aaf84f
https://github.com/cytoscape/cytoscape-impl/commit/4c06e7adb816d268926fcb32a0557e0194aaf84f
Author: Christian Lopes <[email protected]>
Date: 2013-08-23 (Fri, 23 Aug 2013)
Changed paths:
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/FontFaceIcon.java
Log Message:
-----------
Fixes #2098: Font Face icons are now positioned correctly on the C2D Editor
and italic fonts are rendered properly
Commit: decdd6a8d0a6d2d6911b77e5046a42930b2f9cd1
https://github.com/cytoscape/cytoscape-impl/commit/decdd6a8d0a6d2d6911b77e5046a42930b2f9cd1
Author: Christian Lopes <[email protected]>
Date: 2013-08-23 (Fri, 23 Aug 2013)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/TextIcon.java
Log Message:
-----------
Refs #2098: Also improved the alignment of Text icons; and added three dots
to long strings again.
Commit: 063992b60f61e2c28868c523d49730b9daaca29c
https://github.com/cytoscape/cytoscape-impl/commit/063992b60f61e2c28868c523d49730b9daaca29c
Author: Christian Lopes <[email protected]>
Date: 2013-08-23 (Fri, 23 Aug 2013)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/CyActivator.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/RemoveVisualMappingsCommand.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/StartupCommand.java
R
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/DeleteVisualMappingsTask.java
R
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/DeleteVisualMappingsTaskFactory.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTask.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTaskFactory.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/NotificationNames.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
Log Message:
-----------
Refs #1969: Adds undo support to Remove Visual Mappings Task.
Commit: 5d674772764cfd5afdd126e85682c0936448b782
https://github.com/cytoscape/cytoscape-impl/commit/5d674772764cfd5afdd126e85682c0936448b782
Author: Scooter Morris <[email protected]>
Date: 2013-08-24 (Sat, 24 Aug 2013)
Changed paths:
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command-executor-impl/src/main/java/org/cytoscape/command/internal/TFExecutor.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CommandTunableInterceptorImpl.java
M
work-impl/src/main/java/org/cytoscape/work/internal/sync/SyncTunableMutator.java
Log Message:
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Modify the rest of our internal TunableInterceptors to clear the caches
Change-Id: Ie1a98a72a7115a0fb117e3e2df7d05478d9da791
Commit: a8c92aba2e528b74655c04e5d093495aed00c341
https://github.com/cytoscape/cytoscape-impl/commit/a8c92aba2e528b74655c04e5d093495aed00c341
Author: Samad Lotia <[email protected]>
Date: 2013-08-24 (Sat, 24 Aug 2013)
Changed paths:
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table-browser-impl/src/main/java/org/cytoscape/browser/internal/BrowserTable.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/BrowserTableModel.java
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table-browser-impl/src/main/java/org/cytoscape/browser/internal/DefaultTableBrowser.java
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table-browser-impl/src/test/java/org/cytoscape/browser/internal/BrowserTableTest.java
Log Message:
-----------
Switched from boolean to enum for view mode
Commit: 7f0adffb721c9f1880c85ac66c29a674fda7481b
https://github.com/cytoscape/cytoscape-impl/commit/7f0adffb721c9f1880c85ac66c29a674fda7481b
Author: Christian Lopes <[email protected]>
Date: 2013-08-26 (Mon, 26 Aug 2013)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/CyActivator.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CopyVisualStyleTask.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CreateNewVisualStyleTask.java
R
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/DeleteVisualStyleTask.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/DeleteVisualStyleTaskFactory.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualStyleTask.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualStyleTaskFactory.java
Log Message:
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Refs #1969: Adds undo support to tasks Copy/Create/Remove Visual Style.
Commit: 4ff18e76149bc9bf1cb47fdccee7cfff41182b3c
https://github.com/cytoscape/cytoscape-impl/commit/4ff18e76149bc9bf1cb47fdccee7cfff41182b3c
Author: Christian Lopes <[email protected]>
Date: 2013-08-26 (Mon, 26 Aug 2013)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RenameVisualStyleTask.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RenameVisualStyleTaskFactory.java
Log Message:
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Refs #1969: Adds undo support to Rename Visual Style Task.
Commit: 283127f1de2dd65984f3e146745936cd0e47aaf3
https://github.com/cytoscape/cytoscape-impl/commit/283127f1de2dd65984f3e146745936cd0e47aaf3
Author: Christian Lopes <[email protected]>
Date: 2013-08-26 (Mon, 26 Aug 2013)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CopyVisualStyleTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CopyVisualStyleTaskFactory.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CreateNewVisualStyleTask.java
Log Message:
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Refs #1969: Minor refactoring.
Commit: 96c41f985aefe93b82f194b2cc525b5dffadd735
https://github.com/cytoscape/cytoscape-impl/commit/96c41f985aefe93b82f194b2cc525b5dffadd735
Author: Christian Lopes <[email protected]>
Date: 2013-08-26 (Mon, 26 Aug 2013)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/RemoveSelectedDiscreteValuesAction.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
Log Message:
-----------
Refs #1969: Adds undo support to Remove Selected Discrete Values Action.
Fixes updating the visual mapping GUI after the mapping function is changed
from somewhere other than the VizMapper GUI.
Commit: ca50541eb3fca5bd3795910481a54f7220e47613
https://github.com/cytoscape/cytoscape-impl/commit/ca50541eb3fca5bd3795910481a54f7220e47613
Author: Christian Lopes <[email protected]>
Date: 2013-08-27 (Tue, 27 Aug 2013)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/EditSelectedDiscreteValuesAction.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/RemoveSelectedDiscreteValuesAction.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/GenerateValuesTask.java
Log Message:
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Refs #1969: Adds undo support to Edit Selected Discrete Values Action and
Generate Values Task.
Commit: cee03271323e5bf365b845403f550303ba698394
https://github.com/cytoscape/cytoscape-impl/commit/cee03271323e5bf365b845403f550303ba698394
Author: Christian Lopes <[email protected]>
Date: 2013-08-27 (Tue, 27 Aug 2013)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
Log Message:
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Refs #1969: Adds undo support for setting the current visual style and visual
property default values.
Commit: 2b6d36ac98fbf97745be22491e18a77c8656c670
https://github.com/cytoscape/cytoscape-impl/commit/2b6d36ac98fbf97745be22491e18a77c8656c670
Author: Scooter Morris <[email protected]>
Date: 2013-08-27 (Tue, 27 Aug 2013)
Changed paths:
M
core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/DeleteSelectedNodesAndEdgesTask.java
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core-task-impl/src/main/java/org/cytoscape/task/internal/utils/NodeAndEdgeTunable.java
Log Message:
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Change so we don't default to "All Nodes/Edges" when deleting selected...
Change-Id: I3cfc7ec3cc3d388623a6a91b2d51d76bb381fdcb
Commit: 7afa1db413fc5cc2c6f511a84ef9dc636ff29ddf
https://github.com/cytoscape/cytoscape-impl/commit/7afa1db413fc5cc2c6f511a84ef9dc636ff29ddf
Author: Scooter Morris <[email protected]>
Date: 2013-08-27 (Tue, 27 Aug 2013)
Changed paths:
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command-executor-impl/src/main/java/org/cytoscape/command/internal/CyActivator.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/AbstractStringTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BooleanTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedDoubleTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedFloatTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedIntTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedLongTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CommandTunableInterceptorImpl.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyIdentifiableStringTunableHandlerFactory.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyIdentifiableTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyNetworkTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/DoubleTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/EdgeListTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/FileTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/FloatTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/IntTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/ListMultipleTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/ListSingleTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/LongTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/NodeListTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/RowListTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/SimpleStringTunableHandlerFactory.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/StringTunableHandler.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/StringTunableHandlerFactory.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/StringTunableHandlerImpl.java
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command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/URLTunableHandler.java
Log Message:
-----------
Expose StringTunableHandler
Change-Id: I10c533fa177be96f5dc7a5d2c2dcf6098aafba4c
Commit: 9483a5b062d474cd18aff6bb231102556a893dbc
https://github.com/cytoscape/cytoscape-impl/commit/9483a5b062d474cd18aff6bb231102556a893dbc
Author: Keiichiro Ono <[email protected]>
Date: 2013-08-27 (Tue, 27 Aug 2013)
Changed paths:
M io-impl/impl/src/main/java/org/cytoscape/io/internal/CyActivator.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/AbstractNetworkReader.java
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io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkReader.java
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io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFNetworkReader.java
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io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFParser.java
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io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/Interaction.java
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io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
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io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/ReadUtils.java
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io-impl/impl/src/main/java/org/cytoscape/io/internal/write/AbstractCyWriterFactory.java
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io-impl/impl/src/test/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReaderTest.java
Log Message:
-----------
AbstractNetworkReader refactored to make it public. Still need to remove
Utility classes.
Commit: 17774e4fb3b62559d8682db890ba177665516c52
https://github.com/cytoscape/cytoscape-impl/commit/17774e4fb3b62559d8682db890ba177665516c52
Author: Christian Lopes <[email protected]>
Date: 2013-08-28 (Wed, 28 Aug 2013)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/CyActivator.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/ImportDefaultVisualStylesCommand.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/RemoveLockedValuesCommand.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/RemoveVisualMappingsCommand.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/StartupCommand.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/model/RemoveLockedValuesVO.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/ImportDefaultVizmapTask.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/ImportDefaultVizmapTaskFactory.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveLockedValuesTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/NotificationNames.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMenuMediator.java
Log Message:
-----------
Refs #1969: Adds undo support for removing bypass. Some refactoring.
Commit: 2f07f427cec0950558493f584d9172b3fdef5bfe
https://github.com/cytoscape/cytoscape-impl/commit/2f07f427cec0950558493f584d9172b3fdef5bfe
Author: Christian Lopes <[email protected]>
Date: 2013-08-28 (Wed, 28 Aug 2013)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/CyActivator.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/RemoveLockedValuesCommand.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/SetLockedValuesCommand.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/StartupCommand.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/model/LockedValuesVO.java
R
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/model/RemoveLockedValuesVO.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/SetLockedValuesTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/NotificationNames.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMenuMediator.java
Log Message:
-----------
Refs #1969: Adds undo support for setting a bypass to one or more View
elements.
Commit: 4ddee524cfc91ac8accac8b9f5917afa36c2848b
https://github.com/cytoscape/cytoscape-impl/commit/4ddee524cfc91ac8accac8b9f5917afa36c2848b
Author: Samad Lotia <[email protected]>
Date: 2013-08-28 (Wed, 28 Aug 2013)
Changed paths:
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/BrowserTable.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/BrowserTableModel.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/DefaultTableBrowser.java
M
table-browser-impl/src/test/java/org/cytoscape/browser/internal/BrowserTableTest.java
Log Message:
-----------
Added support for auto
Commit: 600306e68cc8f99e65cd2f4df48878dc8ddf48d5
https://github.com/cytoscape/cytoscape-impl/commit/600306e68cc8f99e65cd2f4df48878dc8ddf48d5
Author: Samad Lotia <[email protected]>
Date: 2013-08-28 (Wed, 28 Aug 2013)
Changed paths:
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/DefaultTableBrowser.java
Log Message:
-----------
Made auto default table mode
Commit: 4b1f2d4ce9f0e1bd62a0b894e2587bb6e40b9f2e
https://github.com/cytoscape/cytoscape-impl/commit/4b1f2d4ce9f0e1bd62a0b894e2587bb6e40b9f2e
Author: Samad Lotia <[email protected]>
Date: 2013-08-28 (Wed, 28 Aug 2013)
Changed paths:
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/CyActivator.java
R
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/AbstractStringTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BooleanTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedDoubleTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedFloatTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedIntTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedLongTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CommandTunableInterceptorImpl.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyIdentifiableStringTunableHandlerFactory.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyIdentifiableTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyNetworkTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/DoubleTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/EdgeListTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/FileTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/FloatTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/IntTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/ListMultipleTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/ListSingleTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/LongTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/NodeListTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/RowListTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/SimpleStringTunableHandlerFactory.java
R
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/StringTunableHandler.java
R
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/StringTunableHandlerFactory.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/StringTunableHandlerImpl.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/URLTunableHandler.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/DeleteSelectedNodesAndEdgesTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/utils/NodeAndEdgeTunable.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/CyActivator.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/AbstractNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFParser.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/Interaction.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/ReadUtils.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/AbstractCyWriterFactory.java
M
io-impl/impl/src/test/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReaderTest.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/CyActivator.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/EditSelectedDiscreteValuesAction.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/RemoveSelectedDiscreteValuesAction.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/ImportDefaultVisualStylesCommand.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/RemoveLockedValuesCommand.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/RemoveVisualMappingsCommand.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/SetLockedValuesCommand.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/StartupCommand.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/model/LockedValuesVO.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CopyVisualStyleTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CopyVisualStyleTaskFactory.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CreateNewVisualStyleTask.java
R
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/DeleteVisualStyleTask.java
R
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/DeleteVisualStyleTaskFactory.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/GenerateValuesTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/ImportDefaultVizmapTask.java
R
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/ImportDefaultVizmapTaskFactory.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveLockedValuesTask.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualStyleTask.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualStyleTaskFactory.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RenameVisualStyleTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RenameVisualStyleTaskFactory.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/SetLockedValuesTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/NotificationNames.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMenuMediator.java
Log Message:
-----------
Merge branch 'develop' of https://github.com/cytoscape/cytoscape-impl into
develop
Commit: ac22239f5f8a2930dcdb533dacb2844c0754044e
https://github.com/cytoscape/cytoscape-impl/commit/ac22239f5f8a2930dcdb533dacb2844c0754044e
Author: rodche <[email protected]>
Date: 2013-08-28 (Wed, 28 Aug 2013)
Changed paths:
M biopax-impl/src/main/java/org/cytoscape/biopax/internal/BioPaxMapper.java
M biopax-impl/src/main/java/org/cytoscape/biopax/internal/CyActivator.java
M
biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/BioPaxViewTracker.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/BioPaxVisualStyleUtil.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/CyNetworkUtil.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/CySessionUtil.java
A
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/VisualStyleUtil.java
M
biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/BioPaxContainer.java
M cpath2-impl/pom.xml
M cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPath2Factory.java
M cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CyActivator.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/cytoscape/BinarySifVisualStyleUtil.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/ExecuteGetRecordByCPathId.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/ExecuteGetRecordByCPathIdTaskFactory.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/util/BioPaxUtil.java
Log Message:
-----------
Cleanup in biopax-impl and cpath2-impl; mostly in regard to applying
biopax/sif visual style and visual legend, which now taken care of in the
biopax-impl only (perhaps, still, temporarily - until Cy 3.2 release…)
Commit: 390358a6855e853dcb954e2cba1f65f75877936a
https://github.com/cytoscape/cytoscape-impl/commit/390358a6855e853dcb954e2cba1f65f75877936a
Author: Samad Lotia <[email protected]>
Date: 2013-08-28 (Wed, 28 Aug 2013)
Changed paths:
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/TaskManagerImpl.java
Log Message:
-----------
Changed criteria of task UI--all tasks that have a title automatically get a
UI regardless of execution time
Commit: a99720dff703c46b818a9d7fa2f0a98a64b79976
https://github.com/cytoscape/cytoscape-impl/commit/a99720dff703c46b818a9d7fa2f0a98a64b79976
Author: Keiichiro Ono <[email protected]>
Date: 2013-08-28 (Wed, 28 Aug 2013)
Changed paths:
M io-impl/impl/src/main/java/org/cytoscape/io/internal/CyActivator.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/AbstractNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkReaderFactory.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFNetworkReaderFactory.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReaderFactory.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReader.java
M
io-impl/impl/src/test/java/org/cytoscape/io/internal/read/gml/GMLNetworkReaderTest.java
M
io-impl/impl/src/test/java/org/cytoscape/io/internal/read/sif/SIFNetworkViewReaderTest.java
M io-impl/performance/src/main/java/org/cytoscape/io/read/sif/PerfTest.java
Log Message:
-----------
AbstractNetworkReader had been refactored to avoid dependencies to
SessionUtil.
Commit: 285876dcd6c83053f3249c12bed0fff3f4363524
https://github.com/cytoscape/cytoscape-impl/commit/285876dcd6c83053f3249c12bed0fff3f4363524
Author: Keiichiro Ono <[email protected]>
Date: 2013-08-28 (Wed, 28 Aug 2013)
Changed paths:
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/AbstractNetworkReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/ReadUtils.java
Log Message:
-----------
Dependencies to ReadUtil had been removed. Now the method is private.
Commit: 4bd0c5707c210f096070c57d00b2213729027a39
https://github.com/cytoscape/cytoscape-impl/commit/4bd0c5707c210f096070c57d00b2213729027a39
Author: Keiichiro Ono <[email protected]>
Date: 2013-08-29 (Thu, 29 Aug 2013)
Changed paths:
M biopax-impl/src/main/java/org/cytoscape/biopax/internal/BioPaxMapper.java
M biopax-impl/src/main/java/org/cytoscape/biopax/internal/CyActivator.java
M
biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/BioPaxViewTracker.java
M
biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/DisplayBioPaxXmlTask.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/BioPaxVisualStyleUtil.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/CyNetworkUtil.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/CySessionUtil.java
A
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/VisualStyleUtil.java
M
biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/BioPaxContainer.java
M
biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/BioPaxDetailsPanel.java
M
biopax-impl/src/main/resources/org/cytoscape/biopax/internal/view/binary_legend.html
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/CyActivator.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/TFExecutor.java
R
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/AbstractStringTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BooleanTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedDoubleTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedFloatTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedIntTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/BoundedLongTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CommandTunableInterceptorImpl.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyIdentifiableStringTunableHandlerFactory.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyIdentifiableTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/CyNetworkTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/DoubleTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/EdgeListTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/FileTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/FloatTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/IntTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/ListMultipleTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/ListSingleTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/LongTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/NodeListTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/RowListTunableHandler.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/SimpleStringTunableHandlerFactory.java
R
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/StringTunableHandler.java
R
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/StringTunableHandlerFactory.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/StringTunableHandlerImpl.java
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/tunables/URLTunableHandler.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/DeleteSelectedNodesAndEdgesTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/utils/NodeAndEdgeTunable.java
M cpath2-impl/pom.xml
M cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPath2Factory.java
M cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CyActivator.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/cytoscape/BinarySifVisualStyleUtil.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/ExecuteGetRecordByCPathId.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/ExecuteGetRecordByCPathIdTaskFactory.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/util/BioPaxUtil.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/FontFaceIcon.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/StrokeIcon.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/TextIcon.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/CyActivator.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/AbstractNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLNetworkReaderFactory.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFNetworkReaderFactory.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFParser.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/Interaction.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReaderFactory.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReader.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/util/ReadUtils.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/AbstractCyWriterFactory.java
M
io-impl/impl/src/test/java/org/cytoscape/io/internal/read/gml/GMLNetworkReaderTest.java
M
io-impl/impl/src/test/java/org/cytoscape/io/internal/read/sif/SIFNetworkViewReaderTest.java
M
io-impl/impl/src/test/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReaderTest.java
M io-impl/performance/src/main/java/org/cytoscape/io/read/sif/PerfTest.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/BrowserTable.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/BrowserTableModel.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/DefaultTableBrowser.java
M
table-browser-impl/src/test/java/org/cytoscape/browser/internal/BrowserTableTest.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/CyActivator.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/EditSelectedDiscreteValuesAction.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/RemoveSelectedDiscreteValuesAction.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/ImportDefaultVisualStylesCommand.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/RemoveLockedValuesCommand.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/RemoveVisualMappingsCommand.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/SetLockedValuesCommand.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/StartupCommand.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/model/LockedValuesVO.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CopyVisualStyleTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CopyVisualStyleTaskFactory.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CreateNewVisualStyleTask.java
R
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/DeleteVisualMappingsTask.java
R
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/DeleteVisualMappingsTaskFactory.java
R
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/DeleteVisualStyleTask.java
R
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/DeleteVisualStyleTaskFactory.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/GenerateValuesTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/ImportDefaultVizmapTask.java
R
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/ImportDefaultVizmapTaskFactory.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveLockedValuesTask.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTask.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTaskFactory.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualStyleTask.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualStyleTaskFactory.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RenameVisualStyleTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RenameVisualStyleTaskFactory.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/SetLockedValuesTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/NotificationNames.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheet.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMenuMediator.java
M
work-impl/src/main/java/org/cytoscape/work/internal/sync/SyncTunableMutator.java
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/TaskManagerImpl.java
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/BoundedHandler.java
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/JDialogTunableMutator.java
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/JPanelTunableMutator.java
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/ListMultipleHandler.java
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/ListSingleHandler.java
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/utils/mySlider.java
Log Message:
-----------
Merge branch 'develop' into feature/json-support
Commit: 9256203bb399d7d9d2587b07661a657f282de868
https://github.com/cytoscape/cytoscape-impl/commit/9256203bb399d7d9d2587b07661a657f282de868
Author: Keiichiro Ono <[email protected]>
Date: 2013-08-30 (Fri, 30 Aug 2013)
Changed paths:
A
json-impl/src/main/java/org/cytoscape/io/internal/write/json/serializer/ContinuousMappingSerializer.java
M
json-impl/src/main/java/org/cytoscape/io/internal/write/json/serializer/DiscreteMappingSerializer.java
M
json-impl/src/main/java/org/cytoscape/io/internal/write/json/serializer/JsVisualStyleSerializer.java
M
json-impl/src/main/java/org/cytoscape/io/internal/write/json/serializer/PassthroughMappingSerializer.java
M
json-impl/src/main/java/org/cytoscape/io/internal/write/json/serializer/VisualMappingSerializer.java
A json-impl/src/test/resources/site/.idea/.name
A json-impl/src/test/resources/site/.idea/encodings.xml
A json-impl/src/test/resources/site/.idea/misc.xml
A json-impl/src/test/resources/site/.idea/modules.xml
A json-impl/src/test/resources/site/.idea/scopes/scope_settings.xml
A json-impl/src/test/resources/site/.idea/site.iml
A json-impl/src/test/resources/site/.idea/vcs.xml
A json-impl/src/test/resources/site/.idea/workspace.xml
M json-impl/src/test/resources/site/Gruntfile.js
M json-impl/src/test/resources/site/app/scripts/main.js
M json-impl/src/test/resources/site/app/styles/main.scss
Log Message:
-----------
Start adding mapping serializers.
Compare:
https://github.com/cytoscape/cytoscape-impl/compare/bfa9a7f6cc07...9256203bb399
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