Branch: refs/heads/develop
Home: https://github.com/cytoscape/cytoscape-impl
Commit: 9f776b7b376a134685c94a34908e65a9e28ebe53
https://github.com/cytoscape/cytoscape-impl/commit/9f776b7b376a134685c94a34908e65a9e28ebe53
Author: rodche <[email protected]>
Date: 2013-09-09 (Mon, 09 Sep 2013)
Changed paths:
M biopax-impl/pom.xml
M biopax-impl/src/main/java/org/cytoscape/biopax/internal/BioPaxMapper.java
M
biopax-impl/src/main/java/org/cytoscape/biopax/internal/BioPaxReaderTask.java
M
biopax-impl/src/main/java/org/cytoscape/biopax/internal/BioPaxReaderTaskFactory.java
M biopax-impl/src/main/java/org/cytoscape/biopax/internal/CyActivator.java
A biopax-impl/src/main/java/org/cytoscape/biopax/internal/CyServices.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/BioPaxViewTracker.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/DisplayBioPaxXmlTask.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/action/LaunchExternalBrowser.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/BioPaxUtil.java
M
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/NodeAttributesWrapper.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/ParentFinder.java
A biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/StaxHack.java
M
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/VisualStyleUtil.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/util/WebFileConnect.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/AboutPanel.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/BioPaxContainer.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/BioPaxCytoPanelComponent.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/BioPaxDetailsPanel.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/EdgeFilterUi.java
R
biopax-impl/src/main/java/org/cytoscape/biopax/internal/view/LegendPanel.java
R
biopax-impl/src/main/resources/org/cytoscape/biopax/internal/biopax3-short-metabolic-pathway.owl
M cpath2-impl/pom.xml
R cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPath2Factory.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPathException.java
A cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPathFactory.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPathNetworkImportTask.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPathProperties.java
A cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPathProtocol.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPathResponseFormat.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPathSearchTask.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPathWebService.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPathWebServiceImpl.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CPathWebServiceListener.java
M cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CyActivator.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CytoscapeCPathWebService.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/EmptySetException.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/MergeNetworkEdit.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/ViewNetworkNeighborhoodTask.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/ViewNetworkNeighborhoodTaskFactory.java
R cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/driver/Driver.java
R cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/driver/index.html
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/filters/ChainedFilter.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/filters/DataSourceFilter.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/filters/EntityTypeFilter.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/filters/Filter.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/http/HTTPConnectionHandler.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/http/HTTPEvent.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/http/HTTPReader.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/http/HTTPServer.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/http/HTTPServerListener.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/http/HTTPWriter.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/mapping/MapCPathToCytoscape.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/plugin/CPathPlugIn2.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/CPathNetworkImportTask.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/CPathSearchTask.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/ExecuteGetRecordByCPathId.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/ExecuteGetRecordByCPathIdTaskFactory.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/ExecutePhysicalEntitySearch.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/LoadNetworkFromUrlTask.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/MergeNetworkTask.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/MergeNetworkTaskFactory.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/SelectPhysicalEntity.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/ViewNetworkNeighborhoodTask.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/task/ViewNetworkNeighborhoodTaskFactory.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/util/BioPaxUtil.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/util/NetworkGroupUtil.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/util/NetworkMergeUtil.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/util/NetworkUtil.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/ChainedFilter.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/CheckNode.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/CheckNodeRenderer.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/DataSourceFilter.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/DownloadDetails.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/EntityTypeFilter.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/ExtendedRecordWrapper.java
A cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/Filter.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/InteractionBundleModel.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/InteractionBundlePanel.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/JListWithToolTips.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/JTreeWithCheckNodes.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/MergePanel.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/NetworkWrapper.java
A cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/Organism.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/PathwayTableModel.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/PhysicalEntityDetailsPanel.java
A
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/RecordList.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/SearchBoxPanel.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/SearchDetailsPanel.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/SearchHitsPanel.java
M
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/cPathSearchPanel.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/model/ExtendedRecordWrapper.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/model/InteractionBundleModel.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/model/NetworkWrapper.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/model/Organism.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/model/PathwayTableModel.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/model/RecordList.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/tree/CheckNode.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/tree/CheckNodeRenderer.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/tree/JTreeWithCheckNodes.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/view/tree/TreeDemo.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/web_service/CPathException.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/web_service/CPathProperties.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/web_service/CPathProtocol.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/web_service/CPathResponseFormat.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/web_service/CPathWebService.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/web_service/CPathWebServiceImpl.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/web_service/CPathWebServiceListener.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/web_service/CytoscapeCPathWebService.java
R
cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/web_service/EmptySetException.java
R cpath2-impl/src/test/java/TestCytoscapeCPathWebService.java
Log Message:
-----------
Polished and moved files in cpath2-impl and biopax-impl in preparing for
cpath2-impl removal and upgrading biopax reader plugin
(in Cy 3.1, biopax-impl will read BioPAX data and optionally convert to SIF or
SBGN and delegate to corresp. apps, if any…)
Commit: 51f4114b73e80c50aadd91b08fba226087618bd7
https://github.com/cytoscape/cytoscape-impl/commit/51f4114b73e80c50aadd91b08fba226087618bd7
Author: rodche <[email protected]>
Date: 2013-09-09 (Mon, 09 Sep 2013)
Changed paths:
M cpath2-impl/src/main/java/org/cytoscape/cpath2/internal/CyActivator.java
Log Message:
-----------
Removed all services from the cpath2-impl bundle app (it's deprecated; will
remove from the impl-parent and features.xml and move the sources out later)
Compare:
https://github.com/cytoscape/cytoscape-impl/compare/bc4726bf8948...51f4114b73e8
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