See <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/943/>
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Checking out files: 70% (1779/2541)
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/model/vocab/package.html
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/plugin/MITABLine25.java
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/plugin/PSIMI10XMLNetworkViewReader.java
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/plugin/PSIMI25XMLNetworkViewReader.java
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiCyFileFilter.java
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiNetworkWriterFactory.java
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiTabParser.java
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiTabReader.java
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/plugin/PsiMiTabReaderFactory.java
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/plugin/SchemaVersion.java
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/util/AttributeUtil.java
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/java/org/cytoscape/psi_mi/internal/util/DataServiceException.java
error: git checkout-index: unable to write file
psi-mi-impl/impl/src/main/resources/org/cytoscape/internal/psi_mi/plugin/app.props
error: git checkout-index: unable to write file
psi-mi-impl/performance/src/main/java/org/cytoscape/psi_mi/internal/PerfTest.java
Checking out files: 71% (1805/2541)
Checking out files: 72% (1830/2541)
Checking out files: 73% (1855/2541)
Checking out files: 74% (1881/2541)
Checking out files: 75% (1906/2541)
Checking out files: 76% (1932/2541)
Checking out files: 77% (1957/2541)
Checking out files: 78% (1982/2541)
Checking out files: 79% (2008/2541)
Checking out files: 80% (2033/2541)
Checking out files: 81% (2059/2541)
Checking out files: 82% (2084/2541)
Checking out files: 83% (2110/2541)
Checking out files: 84% (2135/2541)
Checking out files: 85% (2160/2541)
Checking out files: 86% (2186/2541)
Checking out files: 87% (2211/2541)
Checking out files: 88% (2237/2541)
Checking out files: 89% (2262/2541)
Checking out files: 90% (2287/2541)
Checking out files: 91% (2313/2541)
Checking out files: 92% (2338/2541)
Checking out files: 93% (2364/2541)
Checking out files: 94% (2389/2541)
Checking out files: 95% (2414/2541)
Checking out files: 96% (2440/2541)
Checking out files: 97% (2465/2541)
Checking out files: 98% (2491/2541)
Checking out files: 99% (2516/2541)
Checking out files: 100% (2541/2541)
Checking out files: 100% (2541/2541), done.
fatal: unable to write new index file
at hudson.plugins.git.GitAPI.launchCommandIn(GitAPI.java:897)
at hudson.plugins.git.GitAPI.launchCommand(GitAPI.java:858)
at hudson.plugins.git.GitAPI.launchCommand(GitAPI.java:868)
at hudson.plugins.git.GitAPI.checkoutBranch(GitAPI.java:977)
... 13 more
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