See <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/7/>
------------------------------------------ [...truncated 60724 lines...] [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/ding-impl/performance-debug/pom.xml> to org.cytoscape/ding-impl-performance-debug/3.2.0-SNAPSHOT/ding-impl-performance-debug-3.2.0-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/ding-impl/performance-debug/target/ding-impl-performance-debug-3.2.0-SNAPSHOT.jar> to org.cytoscape/ding-impl-performance-debug/3.2.0-20140419.200916-359/ding-impl-performance-debug-3.2.0-20140419.200916-359.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/ding-impl/performance-debug/target/ding-impl-performance-debug-3.2.0-SNAPSHOT-sources.jar> to org.cytoscape/ding-impl-performance-debug/3.2.0-20140419.200916-359/ding-impl-performance-debug-3.2.0-20140419.200916-359-sources.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/ding-impl/performance-debug/target/ding-impl-performance-debug-3.2.0-SNAPSHOT-jar-with-dependencies.jar> to org.cytoscape/ding-impl-performance-debug/3.2.0-20140419.200916-359/ding-impl-performance-debug-3.2.0-20140419.200916-359-jar-with-dependencies.jar [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/vizmap-impl/pom.xml> to org.cytoscape/vizmap-impl-parent/3.2.0-SNAPSHOT/vizmap-impl-parent-3.2.0-SNAPSHOT.pom [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/vizmap-impl/target/vizmap-impl-parent-3.2.0-SNAPSHOT-sources.jar> to org.cytoscape/vizmap-impl-parent/3.2.0-20140419.200943-359/vizmap-impl-parent-3.2.0-20140419.200943-359-sources.jar channel stopped [workspace] $ /opt/maven/bin/mvn -f <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/pom.xml> -e -B sonar:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar?useUnicode=true&characterEncoding=utf8 -Dsonar.host.url=http://code.cytoscape.org/sonar [INFO] Error stacktraces are turned on. [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for org.cytoscape:network-analyzer-impl:bundle:3.2.0-SNAPSHOT [WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.cytoscape:swing-application-api:jar -> duplicate declaration of version (?) @ line 84, column 15 [WARNING] [WARNING] Some problems were encountered while building the effective model for org.cytoscape:work-swing-impl:bundle:3.2.0-SNAPSHOT [WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.cytoscape:swing-util-api:jar -> duplicate declaration of version (?) @ org.cytoscape:work-swing-impl-parent:3.2.0-SNAPSHOT, <http://code.cytoscape.org/jenkins/job/cytoscape-3-impl/ws/work-swing-impl/pom.xml,> line 135, column 15 [WARNING] [WARNING] Some problems were encountered while building the effective model for org.cytoscape:work-swing-impl-parent:pom:3.2.0-SNAPSHOT [WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.cytoscape:swing-util-api:jar -> duplicate declaration of version (?) @ line 135, column 15 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] Cytoscape Implementation Parent Project POM [INFO] BioPAX Reader for Cytoscape [INFO] Cytoscape Command Line Implementation (command-dialog-impl) [INFO] Cytoscape Command Executor Impl (command-executor-impl) [INFO] Cytoscape Equations Impl (equations-impl) [INFO] Cytoscape Model Impl Parent (model-impl-parent) [INFO] Cytoscape Model Impl (model-impl) [INFO] Cytoscape Ding Impl Parent (ding-impl) [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) [INFO] Cytoscape View Model Impl (viewmodel-impl) [INFO] Cytoscape Groups Impl (group-impl) [INFO] Cytoscape Event Impl Parent (event-impl-parent) [INFO] Cytoscape Event Impl (event-impl) [INFO] Cytoscape Filters Impl (filter-impl) [INFO] Cytoscape Filters 2 Impl (filter2-impl) [INFO] Cytoscape IO Impl Parent (io-impl-parent) [INFO] Cytoscape IO Impl (io-impl) [INFO] Cytoscape Layout Impl (layout-impl) [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) [INFO] Cytoscape Editor Impl (editor-impl) [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) [INFO] Cytoscape GraphML Impl (graphml-impl) [INFO] Cytoscape Group Data Impl (group-data-impl) [INFO] Cytoscape Group View Impl (group-view-impl) [INFO] Cytoscape IO Impl Performance (io-impl-performance) [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) [INFO] Cytoscape VizMap Impl (vizmap-impl) [INFO] Cytoscape JSON IO Impl (json-impl) [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) [INFO] Cytoscape Linkout Impl (linkout-impl) [INFO] Cytoscape Log Swing Impl (log-swing-impl) [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) [INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) [INFO] Cytoscape Merge Impl (network-merge-impl) [INFO] Cytoscape App Impl (app-impl) [INFO] Cytoscape Presentation Impl (presentation-impl) [INFO] Cytoscape Property Impl (property-impl) [INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) [INFO] Cytoscape PSI-MI Impl (psi-mi-impl) [INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) [INFO] Cytoscape SBML Impl (sbml-impl) [INFO] Cytoscape Search Impl (search-impl) [INFO] Cytoscape Session Impl (session-impl) [INFO] Cytoscape Help Impl (help-impl) [INFO] Cytoscape Swing Utility Impl (swing-util-impl) [INFO] Cytoscape Swing Application Impl (swing-application-impl) [INFO] Cytoscape Table Browser Impl (table-browser-impl) [INFO] Cytoscape Table Import Impl (table-import-impl) [INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) [INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl) [INFO] Cytoscape Webservice Impl (webservice-impl) [INFO] org.cytoscape.work-headless-impl [INFO] org.cytoscape.work-impl [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) [INFO] Cytoscape Work Swing Impl (work-swing-impl) [INFO] Cytoscape Application Impl (application-impl) [INFO] Cytoscape PSIQUIC Web Service Impl (webservice-psicquic-client-impl) [INFO] Cytoscape Datasource Impl (datasource-impl) [INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) [INFO] Cytoscape Welcome Screen Impl (welcome-impl) [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) [INFO] Cytoscape Scripting Impl (scripting-impl) [INFO] Cytoscape Core Task Impl (core-task-impl) [INFO] Cytoscape Headless Application Impl (headless-application-impl) [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) [INFO] Cytoscape REST Impl (rest-impl) Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/eclipse/m2e/lifecycle-mapping/1.0.0/lifecycle-mapping-1.0.0.pom [WARNING] The POM for org.eclipse.m2e:lifecycle-mapping:jar:1.0.0 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.eclipse.m2e:lifecycle-mapping:1.0.0: Plugin org.eclipse.m2e:lifecycle-mapping:1.0.0 or one of its dependencies could not be resolved: Failed to read artifact descriptor for org.eclipse.m2e:lifecycle-mapping:jar:1.0.0 Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/apache/maven/plugins/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/codehaus/mojo/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/codehaus/mojo/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/apache/maven/plugins/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/codehaus/mojo/sonar-maven-plugin/maven-metadata.xml Downloading: http://code.cytoscape.org/nexus/content/repositories/snapshots/org/codehaus/mojo/sonar-maven-plugin/maven-metadata.xml [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Implementation Parent Project POM 3.2.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [WARNING] The POM for org.eclipse.m2e:lifecycle-mapping:jar:1.0.0 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.eclipse.m2e:lifecycle-mapping:1.0.0: Plugin org.eclipse.m2e:lifecycle-mapping:1.0.0 or one of its dependencies could not be resolved: Failed to read artifact descriptor for org.eclipse.m2e:lifecycle-mapping:jar:1.0.0 Downloading: http://maven-repo.chilay.googlecode.com/hg/org/ivis/chilay-sbgn/maven-metadata.xml Downloaded: http://maven-repo.chilay.googlecode.com/hg/org/ivis/chilay-sbgn/maven-metadata.xml (279 B at 1.8 KB/sec) Downloading: http://maven-repo.chilay.googlecode.com/hg/org/ivis/chilay-sbgn/2.0.1-SNAPSHOT/maven-metadata.xml Downloaded: http://maven-repo.chilay.googlecode.com/hg/org/ivis/chilay-sbgn/2.0.1-SNAPSHOT/maven-metadata.xml (772 B at 8.4 KB/sec) Downloading: http://maven-repo.chilay.googlecode.com/hg/org/ivis/chilay-sbgn/2.0.1-SNAPSHOT/maven-metadata.xml Downloaded: http://maven-repo.chilay.googlecode.com/hg/org/ivis/chilay-sbgn/2.0.1-SNAPSHOT/maven-metadata.xml (772 B at 12.2 KB/sec) [INFO] [INFO] --- sonar-maven-plugin:2.2:sonar (default-cli) @ impl-parent --- [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Cytoscape Implementation Parent Project POM ....... FAILURE [4.977s] [INFO] BioPAX Reader for Cytoscape ....................... SKIPPED [INFO] Cytoscape Command Line Implementation (command-dialog-impl) SKIPPED [INFO] Cytoscape Command Executor Impl (command-executor-impl) SKIPPED [INFO] Cytoscape Equations Impl (equations-impl) ......... SKIPPED [INFO] Cytoscape Model Impl Parent (model-impl-parent) ... SKIPPED [INFO] Cytoscape Model Impl (model-impl) ................. SKIPPED [INFO] Cytoscape Ding Impl Parent (ding-impl) ............ SKIPPED [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SKIPPED [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SKIPPED [INFO] Cytoscape View Model Impl (viewmodel-impl) ........ SKIPPED [INFO] Cytoscape Groups Impl (group-impl) ................ SKIPPED [INFO] Cytoscape Event Impl Parent (event-impl-parent) ... SKIPPED [INFO] Cytoscape Event Impl (event-impl) ................. SKIPPED [INFO] Cytoscape Filters Impl (filter-impl) .............. SKIPPED [INFO] Cytoscape Filters 2 Impl (filter2-impl) ........... SKIPPED [INFO] Cytoscape IO Impl Parent (io-impl-parent) ......... SKIPPED [INFO] Cytoscape IO Impl (io-impl) ....................... SKIPPED [INFO] Cytoscape Layout Impl (layout-impl) ............... SKIPPED [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SKIPPED [INFO] Cytoscape Editor Impl (editor-impl) ............... SKIPPED [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SKIPPED [INFO] Cytoscape GraphML Impl (graphml-impl) ............. SKIPPED [INFO] Cytoscape Group Data Impl (group-data-impl) ....... SKIPPED [INFO] Cytoscape Group View Impl (group-view-impl) ....... SKIPPED [INFO] Cytoscape IO Impl Performance (io-impl-performance) SKIPPED [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) . SKIPPED [INFO] Cytoscape VizMap Impl (vizmap-impl) ............... SKIPPED [INFO] Cytoscape JSON IO Impl (json-impl) ................ SKIPPED [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SKIPPED [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) . SKIPPED [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SKIPPED [INFO] Cytoscape Linkout Impl (linkout-impl) ............. SKIPPED [INFO] Cytoscape Log Swing Impl (log-swing-impl) ......... SKIPPED [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) . SKIPPED [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SKIPPED [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SKIPPED [INFO] Cytoscape NetworkAnalyzer Impl (network-analyzer-impl) SKIPPED [INFO] Cytoscape Merge Impl (network-merge-impl) ......... SKIPPED [INFO] Cytoscape App Impl (app-impl) ..................... SKIPPED [INFO] Cytoscape Presentation Impl (presentation-impl) ... SKIPPED [INFO] Cytoscape Property Impl (property-impl) ........... SKIPPED [INFO] Cytoscape PSI-MI Impl Parent (psi-mi-impl-parent) . SKIPPED [INFO] Cytoscape PSI-MI Impl (psi-mi-impl) ............... SKIPPED [INFO] Cytoscape PSI-MI Impl Performance (psi-mi-impl-performance) SKIPPED [INFO] Cytoscape SBML Impl (sbml-impl) ................... SKIPPED [INFO] Cytoscape Search Impl (search-impl) ............... SKIPPED [INFO] Cytoscape Session Impl (session-impl) ............. SKIPPED [INFO] Cytoscape Help Impl (help-impl) ................... SKIPPED [INFO] Cytoscape Swing Utility Impl (swing-util-impl) .... SKIPPED [INFO] Cytoscape Swing Application Impl (swing-application-impl) SKIPPED [INFO] Cytoscape Table Browser Impl (table-browser-impl) . SKIPPED [INFO] Cytoscape Table Import Impl (table-import-impl) ... SKIPPED [INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) SKIPPED [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ....... SKIPPED [INFO] Cytoscape Biomart Webservice Impl (webservice-biomart-client-impl) SKIPPED [INFO] Cytoscape Webservice Impl (webservice-impl) ....... SKIPPED [INFO] org.cytoscape.work-headless-impl .................. SKIPPED [INFO] org.cytoscape.work-impl ........................... SKIPPED [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SKIPPED [INFO] Cytoscape Work Swing Impl (work-swing-impl) ....... SKIPPED [INFO] Cytoscape Application Impl (application-impl) ..... SKIPPED [INFO] Cytoscape PSIQUIC Web Service Impl (webservice-psicquic-client-impl) SKIPPED [INFO] Cytoscape Datasource Impl (datasource-impl) ....... SKIPPED [INFO] Cytoscape BioGrid Datasource Impl (datasource-biogrid-impl) SKIPPED [INFO] Cytoscape Welcome Screen Impl (welcome-impl) ...... SKIPPED [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SKIPPED [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) ... SKIPPED [INFO] Cytoscape Scripting Impl (scripting-impl) ......... SKIPPED [INFO] Cytoscape Core Task Impl (core-task-impl) ......... SKIPPED [INFO] Cytoscape Headless Application Impl (headless-application-impl) SKIPPED [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SKIPPED [INFO] Cytoscape REST Impl (rest-impl) ................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 8.898s [INFO] Finished at: Sat Apr 19 20:13:16 UTC 2014 [INFO] Final Memory: 29M/243M [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.codehaus.mojo:sonar-maven-plugin:2.2:sonar (default-cli) on project impl-parent: SonarQube server can not be reached at http://code.cytoscape.org/sonar. Please check the parameter 'sonar.host.url'. http://code.cytoscape.org/sonar/api/server/version -> [Help 1] org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.codehaus.mojo:sonar-maven-plugin:2.2:sonar (default-cli) on project impl-parent: SonarQube server can not be reached at http://code.cytoscape.org/sonar. Please check the parameter 'sonar.host.url'. at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:217) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537) at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196) at org.apache.maven.cli.MavenCli.main(MavenCli.java:141) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:290) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:230) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:409) at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:352) Caused by: org.apache.maven.plugin.MojoExecutionException: SonarQube server can not be reached at http://code.cytoscape.org/sonar. Please check the parameter 'sonar.host.url'. at org.codehaus.mojo.sonar.ServerMetadata.logSettings(ServerMetadata.java:86) at org.codehaus.mojo.sonar.SonarMojo.execute(SonarMojo.java:103) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 19 more Caused by: java.io.FileNotFoundException: http://code.cytoscape.org/sonar/api/server/version at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1457) at java.net.URLConnection.getContent(URLConnection.java:688) at org.codehaus.mojo.sonar.ServerMetadata.remoteContent(ServerMetadata.java:96) at org.codehaus.mojo.sonar.ServerMetadata.getVersion(ServerMetadata.java:66) at org.codehaus.mojo.sonar.ServerMetadata.logSettings(ServerMetadata.java:81) ... 22 more [ERROR] [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException Sonar analysis completed: FAILURE Build step 'Sonar' changed build result to FAILURE Build step 'Sonar' marked build as failure -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/cytoscape-cvs. For more options, visit https://groups.google.com/d/optout.
