Branch: refs/heads/feature/3.4-ui-improvements
Home: https://github.com/cytoscape/cytoscape-impl
Commit: ab879bcaeb1dba2a0348a2c8c2a7f45e8c8ae3c8
https://github.com/cytoscape/cytoscape-impl/commit/ab879bcaeb1dba2a0348a2c8c2a7f45e8c8ae3c8
Author: Tim Hull <[email protected]>
Date: 2016-01-25 (Mon, 25 Jan 2016)
Changed paths:
M app-impl/src/main/java/org/cytoscape/app/internal/CyActivator.java
M
app-impl/src/main/java/org/cytoscape/app/internal/net/server/AppGetResponder.java
R
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallAppFromJarTask.java
R
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallAppFromNetworkTask.java
R app-impl/src/main/java/org/cytoscape/app/internal/task/InstallAppTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallAppsFromFileTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallAppsFromWebAppTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallAppsTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallUpdatesTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/task/ResolveAppConflictTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/task/ResolveAppDependenciesTask.java
R
app-impl/src/main/java/org/cytoscape/app/internal/task/ResolveAppInstallationConflictTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/tunable/AppConflictHandler.java
A
app-impl/src/main/java/org/cytoscape/app/internal/tunable/AppConflictHandlerFactory.java
R
app-impl/src/main/java/org/cytoscape/app/internal/tunable/AppInstallationConflictHandler.java
R
app-impl/src/main/java/org/cytoscape/app/internal/tunable/AppInstallationConflictHandlerFactory.java
M
app-impl/src/main/java/org/cytoscape/app/internal/ui/CheckForUpdatesPanel.java
M app-impl/src/main/java/org/cytoscape/app/internal/ui/InstallAppsPanel.java
Log Message:
-----------
Major refactor of app installation code. Resolves dependencies in a more
robust fashion, ensuring all dependencies are fulfilled before starting
install. Also provides support for multiple apps installed as one batch,
fulfilling dependencies from that batch if possible. This same code is
also used when installing from the App Store, allowing dependencies to
be resolved in that case.
Refs #3407 #3408 #3158 #3234
Commit: 52d57c84249e73f83b20bd511963355bfd47825b
https://github.com/cytoscape/cytoscape-impl/commit/52d57c84249e73f83b20bd511963355bfd47825b
Author: Scooter Morris <[email protected]>
Date: 2016-01-26 (Tue, 26 Jan 2016)
Changed paths:
M group-impl/src/main/java/org/cytoscape/group/internal/CyGroupImpl.java
M
group-impl/src/main/java/org/cytoscape/group/internal/data/CyGroupSettingsImpl.java
M
group-impl/src/main/java/org/cytoscape/group/internal/view/GroupViewCollapseHandler.java
Log Message:
-----------
Needed a little more care when handling session loading to make sure
the view type doesn't get messed up. Refs #3421
Commit: aa3f2f01ba6d1a9a0807c57f15fbc6a6345fadbc
https://github.com/cytoscape/cytoscape-impl/commit/aa3f2f01ba6d1a9a0807c57f15fbc6a6345fadbc
Author: Scooter Morris <[email protected]>
Date: 2016-01-27 (Wed, 27 Jan 2016)
Changed paths:
M
layout-prefuse-impl/src/main/java/org/cytoscape/prefuse/layouts/internal/ForceDirectedLayoutTask.java
Log Message:
-----------
Use the default spring length when the edges are unweighted (weight of
0). This avoids some rather nasty numerical problems.
Commit: 16328a4a1428782e727882beb8f156391059f79e
https://github.com/cytoscape/cytoscape-impl/commit/16328a4a1428782e727882beb8f156391059f79e
Author: Christian Lopes <[email protected]>
Date: 2016-01-29 (Fri, 29 Jan 2016)
Changed paths:
M app-impl/src/main/java/org/cytoscape/app/internal/CyActivator.java
M
app-impl/src/main/java/org/cytoscape/app/internal/net/server/AppGetResponder.java
R
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallAppFromJarTask.java
R
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallAppFromNetworkTask.java
R app-impl/src/main/java/org/cytoscape/app/internal/task/InstallAppTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallAppsFromFileTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallAppsFromWebAppTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallAppsTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/task/InstallUpdatesTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/task/ResolveAppConflictTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/task/ResolveAppDependenciesTask.java
R
app-impl/src/main/java/org/cytoscape/app/internal/task/ResolveAppInstallationConflictTask.java
A
app-impl/src/main/java/org/cytoscape/app/internal/tunable/AppConflictHandler.java
A
app-impl/src/main/java/org/cytoscape/app/internal/tunable/AppConflictHandlerFactory.java
R
app-impl/src/main/java/org/cytoscape/app/internal/tunable/AppInstallationConflictHandler.java
R
app-impl/src/main/java/org/cytoscape/app/internal/tunable/AppInstallationConflictHandlerFactory.java
M
app-impl/src/main/java/org/cytoscape/app/internal/ui/CheckForUpdatesPanel.java
M app-impl/src/main/java/org/cytoscape/app/internal/ui/InstallAppsPanel.java
M group-impl/src/main/java/org/cytoscape/group/internal/CyGroupImpl.java
M
group-impl/src/main/java/org/cytoscape/group/internal/data/CyGroupSettingsImpl.java
M
group-impl/src/main/java/org/cytoscape/group/internal/view/GroupViewCollapseHandler.java
M
layout-prefuse-impl/src/main/java/org/cytoscape/prefuse/layouts/internal/ForceDirectedLayoutTask.java
Log Message:
-----------
Merge branch 'develop' into feature/3.4-ui-improvements
Compare:
https://github.com/cytoscape/cytoscape-impl/compare/9044a3ee5d10...16328a4a1428
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