Branch: refs/heads/master
Home: https://github.com/cytoscape/cytoscape-gui-distribution
Commit: 941b50c903a28b31185118511c104bc1882f6218
https://github.com/cytoscape/cytoscape-gui-distribution/commit/941b50c903a28b31185118511c104bc1882f6218
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2016-11-17 (Thu, 17 Nov 2016)
Changed paths:
M application-metadata-impl/pom.xml
M assembly/pom.xml
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M branding/pom.xml
M cmdline-impl/pom.xml
M diagnostics/pom.xml
M features/pom.xml
M integration-test/pom.xml
M launcher/pom.xml
M packaging/pom.xml
M pom.xml
M splash-launcher/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml
Log Message:
-----------
Version number updated to 3.6.0-SNAPSHOT
Commit: 8bc8532b770d59b714dd9692d4a4aa189e22a2e6
https://github.com/cytoscape/cytoscape-gui-distribution/commit/8bc8532b770d59b714dd9692d4a4aa189e22a2e6
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-02-02 (Thu, 02 Feb 2017)
Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j
Log Message:
-----------
Update Cytoscape.install4j
Updated Mac install advice ... no longer warn to explicitly set file
association, as Mac seems to now associate an application with a suffix.
Commit: e5e6dc6d5f0f0216f20fa22c29e037eb310ccab3
https://github.com/cytoscape/cytoscape-gui-distribution/commit/e5e6dc6d5f0f0216f20fa22c29e037eb310ccab3
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2017-03-28 (Tue, 28 Mar 2017)
Changed paths:
A assembly/src/main/resources/sampleData/sessions/Sample Yeast Network.cys
Log Message:
-----------
Refs #3798: Copies galFiltered.cys to sampleData/sessions/ and rename it to
“Sample Yeast Network.cys”.
Commit: 56e6e8d1bf7a38cd0d982456264743b132000bad
https://github.com/cytoscape/cytoscape-gui-distribution/commit/56e6e8d1bf7a38cd0d982456264743b132000bad
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2017-05-09 (Tue, 09 May 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Includes the new version of the psicquic-client, which supports the new
Network Search widget.
Commit: 663354a138641092850b01419db0645b9e744e19
https://github.com/cytoscape/cytoscape-gui-distribution/commit/663354a138641092850b01419db0645b9e744e19
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2017-06-05 (Mon, 05 Jun 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Refs #3798: Removes "welcome" core app.
Commit: b17ade6ea4b6c275755f9ae8369b331dfbba170b
https://github.com/cytoscape/cytoscape-gui-distribution/commit/b17ade6ea4b6c275755f9ae8369b331dfbba170b
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2017-06-06 (Tue, 06 Jun 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Refs #3798: Adds back "welcome" app (it loads news.html and provides a
workflow task).
Commit: 499daee9dac2b85c40f772a9f44cacdef4b6298c
https://github.com/cytoscape/cytoscape-gui-distribution/commit/499daee9dac2b85c40f772a9f44cacdef4b6298c
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2017-06-06 (Tue, 06 Jun 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Refs #3798: Increments welcome app version number.
Commit: 7089edbc29009c92b38440e049b7a9c81a43291c
https://github.com/cytoscape/cytoscape-gui-distribution/commit/7089edbc29009c92b38440e049b7a9c81a43291c
Author: David Otasek <dotasek....@gmail.com>
Date: 2017-06-29 (Thu, 29 Jun 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Update CyREST artifactItem
Updated to 3.5.0
Commit: 67e346fc2cff4fd6fe5d7bbf70818555ecd48fc7
https://github.com/cytoscape/cytoscape-gui-distribution/commit/67e346fc2cff4fd6fe5d7bbf70818555ecd48fc7
Author: David Otasek <dotasek....@gmail.com>
Date: 2017-08-14 (Mon, 14 Aug 2017)
Changed paths:
M
integration-test/src/test/java/org/cytoscape/session/BasicIntegrationTest.java
Log Message:
-----------
Added javax.ws.rs to BasicIntegrationTest
Commit: 8721d15ef3b5095713ab58880f682f7395e943a8
https://github.com/cytoscape/cytoscape-gui-distribution/commit/8721d15ef3b5095713ab58880f682f7395e943a8
Author: Scooter Morris <scoo...@cgl.ucsf.edu>
Date: 2017-08-22 (Tue, 22 Aug 2017)
Changed paths:
M third-party/pom.xml
Log Message:
-----------
Update guava to version 22.0
Commit: 3fea81691962700b0048e9dca45f64c81cbb836d
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3fea81691962700b0048e9dca45f64c81cbb836d
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2017-08-29 (Tue, 29 Aug 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Using the new versions of CyREST and Command Dialog.
Commit: 5ea59ee5a7a437c798b5db5f62aba49083eae8dd
https://github.com/cytoscape/cytoscape-gui-distribution/commit/5ea59ee5a7a437c798b5db5f62aba49083eae8dd
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2017-08-30 (Wed, 30 Aug 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Using the new version (3.6) of command-dialog in Cytoscape.
Commit: 85158b996db6effe3eb0cf2fd495c2c8d8de1fc2
https://github.com/cytoscape/cytoscape-gui-distribution/commit/85158b996db6effe3eb0cf2fd495c2c8d8de1fc2
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2017-09-14 (Thu, 14 Sep 2017)
Changed paths:
M
integration-test/src/test/java/org/cytoscape/session/Cy263SimpleSessionLodingTest.java
M
integration-test/src/test/java/org/cytoscape/session/Cy270SimpleSessionLodingTest.java
M
integration-test/src/test/java/org/cytoscape/session/Cy283ComplexSessionLodingTest.java
Log Message:
-----------
Refs #1693: Removes tests for Font properties, since they intermittently fail.
Commit: e9ce1294b5870acb5965eab8e7353d50c41aa400
https://github.com/cytoscape/cytoscape-gui-distribution/commit/e9ce1294b5870acb5965eab8e7353d50c41aa400
Author: Brett Settle <brettjset...@gmail.com>
Date: 2017-09-26 (Tue, 26 Sep 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
json jar update, export to web changes.
Commit: 729b6fa4d9bceb6618f1d9d8adc88b3cc540c06e
https://github.com/cytoscape/cytoscape-gui-distribution/commit/729b6fa4d9bceb6618f1d9d8adc88b3cc540c06e
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2017-09-27 (Wed, 27 Sep 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Updates json artifactItem version to 3.6.0.
Commit: 0776fed61f528fe44c2d62ccb97e3567a598946f
https://github.com/cytoscape/cytoscape-gui-distribution/commit/0776fed61f528fe44c2d62ccb97e3567a598946f
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-10-03 (Tue, 03 Oct 2017)
Changed paths:
M .gitignore
M third-party/pom.xml
Log Message:
-----------
Apache commons added again for now (there are some dependencies from 3rd
party apps)
Commit: 25b6d018f10c43e073e3b72430c3159ba991a3b2
https://github.com/cytoscape/cytoscape-gui-distribution/commit/25b6d018f10c43e073e3b72430c3159ba991a3b2
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-10-04 (Wed, 04 Oct 2017)
Changed paths:
M packaging/README.txt
Log Message:
-----------
Update README.txt
Commit: fa9f656453e596e67b8b2b7a30372f5059b4b97c
https://github.com/cytoscape/cytoscape-gui-distribution/commit/fa9f656453e596e67b8b2b7a30372f5059b4b97c
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-10-04 (Wed, 04 Oct 2017)
Changed paths:
M packaging/README.txt
Log Message:
-----------
Update README.txt
Commit: 1a5cb85ae57ad8498a813be769f9bdefd8c34677
https://github.com/cytoscape/cytoscape-gui-distribution/commit/1a5cb85ae57ad8498a813be769f9bdefd8c34677
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-10-04 (Wed, 04 Oct 2017)
Changed paths:
M packaging/README.txt
Log Message:
-----------
Update README.txt
Commit: 3d866b4c0390a5bb28f2179468b81adb38830854
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3d866b4c0390a5bb28f2179468b81adb38830854
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-10-06 (Fri, 06 Oct 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
New core apps added to distribution
Commit: 78f86b5ac95adb5036890d0d588ea64f9b7470be
https://github.com/cytoscape/cytoscape-gui-distribution/commit/78f86b5ac95adb5036890d0d588ea64f9b7470be
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-10-06 (Fri, 06 Oct 2017)
Changed paths:
M features/src/main/resources/features.xml
Log Message:
-----------
yFiles layouts removed from the core.
Commit: edc68ce7c00478810d7ce024cb8815765234cf68
https://github.com/cytoscape/cytoscape-gui-distribution/commit/edc68ce7c00478810d7ce024cb8815765234cf68
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-10-09 (Mon, 09 Oct 2017)
Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j
Log Message:
-----------
Added panel for sharing permissions
Commit: da05af5ebe387eb64bb19410811e2bd728c290e7
https://github.com/cytoscape/cytoscape-gui-distribution/commit/da05af5ebe387eb64bb19410811e2bd728c290e7
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-10-09 (Mon, 09 Oct 2017)
Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j
Log Message:
-----------
Delete cytoscape.installoptions during uninstall
Commit: 8a88a5fa466a539e8b4b099976e059de341f234e
https://github.com/cytoscape/cytoscape-gui-distribution/commit/8a88a5fa466a539e8b4b099976e059de341f234e
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-10-10 (Tue, 10 Oct 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Duplicate welcome screen dependency removed.
Commit: d945d4aeff83a7382d5ad4dba33165925630004e
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d945d4aeff83a7382d5ad4dba33165925630004e
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-10-10 (Tue, 10 Oct 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
CX supoprt updated to 2.2.2.
Commit: 99a522247d94166bd48802f3c1754785e9720092
https://github.com/cytoscape/cytoscape-gui-distribution/commit/99a522247d94166bd48802f3c1754785e9720092
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-10-11 (Wed, 11 Oct 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
CyNDEx2 updated to 2.1.4
Commit: e43f92603091c9ccd3f227e92d9dfaa8d53f3dea
https://github.com/cytoscape/cytoscape-gui-distribution/commit/e43f92603091c9ccd3f227e92d9dfaa8d53f3dea
Author: Brett Settle <brettjset...@gmail.com>
Date: 2017-10-12 (Thu, 12 Oct 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
copycat layout version update
Commit: d0f274d371320c83018cf412883c3670ca55240e
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d0f274d371320c83018cf412883c3670ca55240e
Author: Brett Settle <brettjset...@gmail.com>
Date: 2017-10-26 (Thu, 26 Oct 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
diffusion version update
Commit: 4c0b3baa1761fa203deec7f4af3019a503a5e3d7
https://github.com/cytoscape/cytoscape-gui-distribution/commit/4c0b3baa1761fa203deec7f4af3019a503a5e3d7
Author: Brett Settle <brettjset...@gmail.com>
Date: 2017-10-27 (Fri, 27 Oct 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
diffusion version typo
Commit: 7aaaa0b37b5647e325b0ec3f1d5ef0953957412d
https://github.com/cytoscape/cytoscape-gui-distribution/commit/7aaaa0b37b5647e325b0ec3f1d5ef0953957412d
Author: David Otasek <dotasek....@gmail.com>
Date: 2017-10-30 (Mon, 30 Oct 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Update included CyREST and Diffusion
Commit: 053693ff913b7ca59c0092ca407c163c022bd691
https://github.com/cytoscape/cytoscape-gui-distribution/commit/053693ff913b7ca59c0092ca407c163c022bd691
Author: Brett Settle <brettjset...@gmail.com>
Date: 2017-10-30 (Mon, 30 Oct 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
updated CyREST to 2.1.5
Commit: 048fa0b589b4f4fca966b14220ee8ffc5ae2d13d
https://github.com/cytoscape/cytoscape-gui-distribution/commit/048fa0b589b4f4fca966b14220ee8ffc5ae2d13d
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2017-10-31 (Tue, 31 Oct 2017)
Changed paths:
M assembly/src/main/filtered-resources/etc/system.properties
Log Message:
-----------
Refs #3967: Removes the "useScreenMenuBar" entry from system.properties,
because it's now dynamically set by the swing-application-impl CyActivator.
Commit: 57045371260efc2c8447683c14c6aa0714cca0d3
https://github.com/cytoscape/cytoscape-gui-distribution/commit/57045371260efc2c8447683c14c6aa0714cca0d3
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-11-01 (Wed, 01 Nov 2017)
Changed paths:
M assembly/src/main/resources/sampleData/galFiltered.cys
Log Message:
-----------
Added snapshot as thumbnail
Commit: eb559ba226ff27896706f9377cdd9b9e46ca9472
https://github.com/cytoscape/cytoscape-gui-distribution/commit/eb559ba226ff27896706f9377cdd9b9e46ca9472
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-11-01 (Wed, 01 Nov 2017)
Changed paths:
A assembly/src/main/resources/sampleData/sessions/Affinity Purification.cys
A assembly/src/main/resources/sampleData/sessions/Ivacaftor Coauthor.cys
A assembly/src/main/resources/sampleData/sessions/Styles Demo.cys
A assembly/src/main/resources/sampleData/sessions/TCGA Colorectal Cancer.cys
A assembly/src/main/resources/sampleData/sessions/Yeast Genetic
Interactions.cys
A assembly/src/main/resources/sampleData/sessions/Yeast Perturbation.cys
Log Message:
-----------
Added these for new Starter Panel
Commit: d1102f89b13dff772f1c46af022aaf1ff0cad5f7
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d1102f89b13dff772f1c46af022aaf1ff0cad5f7
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-11-01 (Wed, 01 Nov 2017)
Changed paths:
R assembly/src/main/resources/sampleData/sessions/Sample Yeast Network.cys
Log Message:
-----------
Deprecated in favor of multiple sample sessions
Commit: acf660bbf477e4fe2ef2a5b39fea7090debee1ae
https://github.com/cytoscape/cytoscape-gui-distribution/commit/acf660bbf477e4fe2ef2a5b39fea7090debee1ae
Author: Scooter Morris <scoo...@cgl.ucsf.edu>
Date: 2017-11-01 (Wed, 01 Nov 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Update version of command-dialog to 3.6.1
Commit: 06ca1b937b7a1fa9e54c9835dbd79dc2052bd0f0
https://github.com/cytoscape/cytoscape-gui-distribution/commit/06ca1b937b7a1fa9e54c9835dbd79dc2052bd0f0
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-01 (Wed, 01 Nov 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Dependency to biogrid has been removed.
Commit: 911c5d41138c6ee6a1b345edcc5f822eda776b54
https://github.com/cytoscape/cytoscape-gui-distribution/commit/911c5d41138c6ee6a1b345edcc5f822eda776b54
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-01 (Wed, 01 Nov 2017)
Changed paths:
R assembly/src/main/resources/sampleData/biogrid.zip
Log Message:
-----------
Biogrid resource file removed.
Commit: 67e0d83f35d25d5bd9a6b6b9c81b6554715d86fb
https://github.com/cytoscape/cytoscape-gui-distribution/commit/67e0d83f35d25d5bd9a6b6b9c81b6554715d86fb
Author: Brett Settle <brettjset...@gmail.com>
Date: 2017-11-01 (Wed, 01 Nov 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
CyNDEx2 version 2.1.6
Commit: 9ac67ba68086e2684d31faea90b96f6f76eab81d
https://github.com/cytoscape/cytoscape-gui-distribution/commit/9ac67ba68086e2684d31faea90b96f6f76eab81d
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-11-02 (Thu, 02 Nov 2017)
Changed paths:
M assembly/src/main/resources/sampleData/sessions/Yeast Genetic
Interactions.cys
Log Message:
-----------
Improved thumbnail
Commit: 1c8df21f042a4452ab5d94b7e73246a8499df995
https://github.com/cytoscape/cytoscape-gui-distribution/commit/1c8df21f042a4452ab5d94b7e73246a8499df995
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-02 (Thu, 02 Nov 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
All core apps are updated to the latest version.
Commit: 5d8b65045ec4d8dac2c0ab957562871ae2a62f58
https://github.com/cytoscape/cytoscape-gui-distribution/commit/5d8b65045ec4d8dac2c0ab957562871ae2a62f58
Author: Brett Settle <brettjset...@gmail.com>
Date: 2017-11-03 (Fri, 03 Nov 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
cyndex2 version update
Commit: 0eed8ce9b1115c96919fa3886254012b804a1b7e
https://github.com/cytoscape/cytoscape-gui-distribution/commit/0eed8ce9b1115c96919fa3886254012b804a1b7e
Author: Adam Treister <adamtreis...@gmail.com>
Date: 2017-11-06 (Mon, 06 Nov 2017)
Changed paths:
M pom.xml
Log Message:
-----------
Update pom.xml
changed version number, remove SNAPSHOT
Commit: 7b68c8762cc97d692952a49a50871c5f3610001b
https://github.com/cytoscape/cytoscape-gui-distribution/commit/7b68c8762cc97d692952a49a50871c5f3610001b
Author: Adam Treister <adamtreis...@gmail.com>
Date: 2017-11-06 (Mon, 06 Nov 2017)
Changed paths:
M pom.xml
Log Message:
-----------
Update pom.xml
returning SNAPSHOT
Commit: efb202b2abf4ea9e613803eebe8c8b9c7ce2d994
https://github.com/cytoscape/cytoscape-gui-distribution/commit/efb202b2abf4ea9e613803eebe8c8b9c7ce2d994
Author: Adam Treister <adamtreis...@gmail.com>
Date: 2017-11-06 (Mon, 06 Nov 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Update pom.xml
changed version of idampper to 3.6.0
Commit: c009209f5e3b1fbd1d4c39773ecb2528ff75df0c
https://github.com/cytoscape/cytoscape-gui-distribution/commit/c009209f5e3b1fbd1d4c39773ecb2528ff75df0c
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-06 (Mon, 06 Nov 2017)
Changed paths:
M application-metadata-impl/pom.xml
M assembly/pom.xml
M branding/pom.xml
M cmdline-impl/pom.xml
M diagnostics/pom.xml
M features/pom.xml
M integration-test/pom.xml
M launcher/pom.xml
M packaging/pom.xml
M pom.xml
M splash-launcher/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml
Log Message:
-----------
Version number updated for 3.6.0-RC1.
Commit: 8d5e62b04a0f0ae465f8afc9d4d30eafeb637513
https://github.com/cytoscape/cytoscape-gui-distribution/commit/8d5e62b04a0f0ae465f8afc9d4d30eafeb637513
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-06 (Mon, 06 Nov 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Some of the core app dependencies have been updated to the latest version.
Commit: c3ae082b68826ec3b819e0642831cfa733617d74
https://github.com/cytoscape/cytoscape-gui-distribution/commit/c3ae082b68826ec3b819e0642831cfa733617d74
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-06 (Mon, 06 Nov 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Biomart client updated to 3.3.2.
Commit: b0508b05eb71dbe5ab151131934d1d4bfa1494f6
https://github.com/cytoscape/cytoscape-gui-distribution/commit/b0508b05eb71dbe5ab151131934d1d4bfa1494f6
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-06 (Mon, 06 Nov 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Biopax updated to 3.3.2.
Commit: a0197a19df1ba532d4483715ca74edba6d65273d
https://github.com/cytoscape/cytoscape-gui-distribution/commit/a0197a19df1ba532d4483715ca74edba6d65273d
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-07 (Tue, 07 Nov 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
All version numbers of core apps are checked & updated.
Commit: 4fda9e8bee373e550c27590af61847124dbd8cd2
https://github.com/cytoscape/cytoscape-gui-distribution/commit/4fda9e8bee373e550c27590af61847124dbd8cd2
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-08 (Wed, 08 Nov 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
meta app bundle's version number has been updated to 3.6.0
Commit: 2499f66aff12daff2ae9ed14958fda258153219e
https://github.com/cytoscape/cytoscape-gui-distribution/commit/2499f66aff12daff2ae9ed14958fda258153219e
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-08 (Wed, 08 Nov 2017)
Changed paths:
M packaging/pom.xml
Log Message:
-----------
Typo in URL fixed.
Commit: de5478a0cfff71abf5d4f680705746ba3b1285d7
https://github.com/cytoscape/cytoscape-gui-distribution/commit/de5478a0cfff71abf5d4f680705746ba3b1285d7
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-11-08 (Wed, 08 Nov 2017)
Changed paths:
M assembly/src/main/resources/sampleData/sessions/Styles Demo.cys
M assembly/src/main/resources/sampleData/sessions/Yeast Genetic
Interactions.cys
Log Message:
-----------
Add files via upload
Commit: d0da225fa3c3100eeea9da30becd037a95c51aaa
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d0da225fa3c3100eeea9da30becd037a95c51aaa
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-14 (Tue, 14 Nov 2017)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
CyNDEx2 removed from the core for now.
Commit: 19fad6aaaeb657bfb92401577c692c34e826560e
https://github.com/cytoscape/cytoscape-gui-distribution/commit/19fad6aaaeb657bfb92401577c692c34e826560e
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-11-15 (Wed, 15 Nov 2017)
Changed paths:
R assembly/src/main/resources/sampleData/sessions/Yeast Genetic
Interactions.cys
Log Message:
-----------
Removed because of corrupt session
Commit: 3dceb9d3541791b4816f756ae6b4c054be17a288
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3dceb9d3541791b4816f756ae6b4c054be17a288
Author: Barry Demchak <idekerlab.bdemc...@gmail.com>
Date: 2017-11-15 (Wed, 15 Nov 2017)
Changed paths:
M assembly/src/main/resources/sampleData/sessions/Styles Demo.cys
Log Message:
-----------
Fixed bad thumbnail
Commit: 67ed15fea8db62436a69e4ac0230698d1208deaf
https://github.com/cytoscape/cytoscape-gui-distribution/commit/67ed15fea8db62436a69e4ac0230698d1208deaf
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-15 (Wed, 15 Nov 2017)
Changed paths:
M application-metadata-impl/pom.xml
M assembly/pom.xml
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M branding/pom.xml
M cmdline-impl/pom.xml
M diagnostics/pom.xml
M features/pom.xml
M integration-test/pom.xml
M launcher/pom.xml
M packaging/pom.xml
M pom.xml
M splash-launcher/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml
Log Message:
-----------
Version number updated for the final release version 3.6.0.
Commit: 9f06ff5f340569ceb6fe063bace5aa79bb8ec0af
https://github.com/cytoscape/cytoscape-gui-distribution/commit/9f06ff5f340569ceb6fe063bace5aa79bb8ec0af
Author: Keiichiro Ono <kei...@gmail.com>
Date: 2017-11-15 (Wed, 15 Nov 2017)
Changed paths:
M .gitignore
M application-metadata-impl/pom.xml
M assembly/pom.xml
M assembly/src/main/bin/cytoscape.bat
M assembly/src/main/bin/cytoscape.sh
M assembly/src/main/filtered-resources/etc/system.properties
R assembly/src/main/resources/sampleData/biogrid.zip
M assembly/src/main/resources/sampleData/galFiltered.cys
A assembly/src/main/resources/sampleData/sessions/Affinity Purification.cys
A assembly/src/main/resources/sampleData/sessions/Ivacaftor Coauthor.cys
A assembly/src/main/resources/sampleData/sessions/Styles Demo.cys
A assembly/src/main/resources/sampleData/sessions/TCGA Colorectal Cancer.cys
A assembly/src/main/resources/sampleData/sessions/Yeast Perturbation.cys
M branding/pom.xml
M cmdline-impl/pom.xml
M diagnostics/pom.xml
M features/pom.xml
M features/src/main/resources/features.xml
M integration-test/pom.xml
M
integration-test/src/test/java/org/cytoscape/session/BasicIntegrationTest.java
M
integration-test/src/test/java/org/cytoscape/session/Cy263SimpleSessionLodingTest.java
M
integration-test/src/test/java/org/cytoscape/session/Cy270SimpleSessionLodingTest.java
M
integration-test/src/test/java/org/cytoscape/session/Cy283ComplexSessionLodingTest.java
M launcher/pom.xml
M packaging/README.txt
M packaging/pom.xml
M packaging/src/main/install4j/Cytoscape.install4j
M pom.xml
M splash-launcher/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml
Log Message:
-----------
Merge branch 'release/3.6.0'
Compare:
https://github.com/cytoscape/cytoscape-gui-distribution/compare/c1a9bed45950...9f06ff5f3405
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