Branch: refs/heads/release/3.6.1
Home: https://github.com/cytoscape/cytoscape-impl
Commit: 31ff5252b13c8c8baa1983592b9322ccf39728a0
https://github.com/cytoscape/cytoscape-impl/commit/31ff5252b13c8c8baa1983592b9322ccf39728a0
Author: Keiichiro Ono <[email protected]>
Date: 2018-01-04 (Thu, 04 Jan 2018)
Changed paths:
M app-impl/pom.xml
M application-impl/pom.xml
M command-executor-impl/pom.xml
M core-task-impl/pom.xml
M datasource-impl/pom.xml
M ding-impl/ding-presentation-impl/pom.xml
M ding-impl/performance-debug/pom.xml
M ding-impl/pom.xml
M edge-bundler-impl/pom.xml
M editor-impl/pom.xml
M equations-functions-impl/pom.xml
M equations-impl/pom.xml
M event-impl/impl/pom.xml
M event-impl/it/pom.xml
M event-impl/pom.xml
M filter-impl/pom.xml
M filter2-impl/pom.xml
M graphml-impl/pom.xml
M group-impl/pom.xml
M gui-cmdline-parser-impl/pom.xml
M headless-application-impl/pom.xml
M headless-cmdline-parser-impl/pom.xml
M io-impl/impl/pom.xml
M io-impl/performance/pom.xml
M io-impl/pom.xml
M jobs-impl/pom.xml
M layout-cytoscape-impl/pom.xml
M layout-impl/pom.xml
M layout-jgraph-impl/pom.xml
M layout-prefuse-impl/pom.xml
M linkout-impl/pom.xml
M log-swing-impl/pom.xml
M manual-layout-impl/pom.xml
M model-impl/impl/pom.xml
M model-impl/it/pom.xml
M model-impl/performance-debug/pom.xml
M model-impl/performance/pom.xml
M model-impl/pom.xml
M model-impl/table-performance-debug/pom.xml
M pom.xml
M presentation-impl/pom.xml
M property-impl/pom.xml
M scripting-impl/pom.xml
M search-impl/pom.xml
M session-impl/impl/pom.xml
M session-impl/integration-test/pom.xml
M session-impl/pom.xml
M swing-application-impl/pom.xml
M swing-util-impl/pom.xml
M table-browser-impl/pom.xml
M table-import-impl/pom.xml
M viewmodel-impl/impl/pom.xml
M viewmodel-impl/it/pom.xml
M viewmodel-impl/pom.xml
M vizmap-gui-core-impl/pom.xml
M vizmap-gui-impl/pom.xml
M vizmap-impl/impl/pom.xml
M vizmap-impl/it/pom.xml
M vizmap-impl/pom.xml
M webservice-impl/pom.xml
M work-headless-impl/pom.xml
M work-impl/pom.xml
M work-swing-impl/impl/pom.xml
M work-swing-impl/it/pom.xml
M work-swing-impl/pom.xml
Log Message:
-----------
Version number updated to 3.6.1
Commit: fc601c3290500b2fc2ee749ab9dfcb9a9af46b21
https://github.com/cytoscape/cytoscape-impl/commit/fc601c3290500b2fc2ee749ab9dfcb9a9af46b21
Author: Scooter Morris <[email protected]>
Date: 2018-01-17 (Wed, 17 Jan 2018)
Changed paths:
M core-task-impl/src/main/java/org/cytoscape/task/internal/CyActivator.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/edit/ConnectSelectedNodesTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/group/CollapseGroupTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/group/GroupNodesTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/group/ListGroupsTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/group/UnGroupNodesTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/network/DestroyNetworkTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/network/NewEmptyNetworkTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/AddEdgeTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/AddNodeTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/DeleteSelectedNodesAndEdgesTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/GetEdgeTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/GetNodeTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/ListEdgesTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/ListNetworksTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/ListNodesTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/table/CreateTableTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/table/DestroyTableTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/table/GetValueTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListRowsTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListTablesTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/table/MergeTablesTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/table/SetTableTitleTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/title/EditNetworkTitleTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/view/GetCurrentNetworkViewTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/view/ListNetworkViewsTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/vizmap/ApplyVisualStyleTask.java
Log Message:
-----------
Remove all bare SUID values from core-task-impl JSON returns.
Refs #4001
Commit: 74b443eebbf7578f585d1dabba0f181a50e89c65
https://github.com/cytoscape/cytoscape-impl/commit/74b443eebbf7578f585d1dabba0f181a50e89c65
Author: Scooter Morris <[email protected]>
Date: 2018-01-17 (Wed, 17 Jan 2018)
Changed paths:
M
command-executor-impl/src/main/java/org/cytoscape/command/internal/StringToModelImpl.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/CyActivator.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/group/AbstractGroupTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/group/CollapseGroupTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/group/UnGroupNodesTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/hide/HideCommandTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/hide/UnHideCommandTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/networkobjects/AddTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/select/DeselectTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/table/ListRowsTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/utils/NodeAndEdgeTunable.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/view/DestroyNetworkViewTask.java
Log Message:
-----------
Refs #4001 Update to fix issues noted in review
Commit: 71b8e2deb2edf6e6cd58885ce3adce489d912138
https://github.com/cytoscape/cytoscape-impl/commit/71b8e2deb2edf6e6cd58885ce3adce489d912138
Author: Alexander Pico <[email protected]>
Date: 2018-01-18 (Thu, 18 Jan 2018)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java
Log Message:
-----------
updated tutorials link to generic form
Commit: 80b066b2c9bf2ced2ba7034570ece54e28d22683
https://github.com/cytoscape/cytoscape-impl/commit/80b066b2c9bf2ced2ba7034570ece54e28d22683
Author: Scooter Morris <[email protected]>
Date: 2018-02-15 (Thu, 15 Feb 2018)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/GroupAnnotationImpl.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/LayerAnnotationTask.java
Log Message:
-----------
Updated to pass ZOrder and canvas changes to GroupAnnotation children
Refs #4053
Commit: c361cab4e0926496a2db3788df2e488ae7958c2a
https://github.com/cytoscape/cytoscape-impl/commit/c361cab4e0926496a2db3788df2e488ae7958c2a
Author: Scooter Morris <[email protected]>
Date: 2018-02-15 (Thu, 15 Feb 2018)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/GroupAnnotationImpl.java
Log Message:
-----------
Refs #4040 Adds annotations to the manager (if they aren't already)
when they are added to this group. Also cleaned up a couple of other
oddities with group annotations.
Commit: 89432c6363afd8e5ef6e8980d13b89d12bf1970d
https://github.com/cytoscape/cytoscape-impl/commit/89432c6363afd8e5ef6e8980d13b89d12bf1970d
Author: Scooter Morris <[email protected]>
Date: 2018-02-15 (Thu, 15 Feb 2018)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/AbstractAnnotation.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/GroupAnnotationImpl.java
Log Message:
-----------
Refs #4040 More fixes to GroupAnnotations
Commit: aedca955567a663a5eaedad9e5edf3a8531e36e7
https://github.com/cytoscape/cytoscape-impl/commit/aedca955567a663a5eaedad9e5edf3a8531e36e7
Author: Scooter Morris <[email protected]>
Date: 2018-02-15 (Thu, 15 Feb 2018)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/CyAnnotator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/AbstractAnnotation.java
Log Message:
-----------
Refs #4040. Fallout from previous patch, which broke reloading of
annotations.
Commit: ab2a9ea7195af774958d92b2a34ec687e5867620
https://github.com/cytoscape/cytoscape-impl/commit/ab2a9ea7195af774958d92b2a34ec687e5867620
Author: Scooter Morris <[email protected]>
Date: 2018-02-15 (Thu, 15 Feb 2018)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/CyAnnotator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/listeners/CanvasMouseMotionListener.java
Log Message:
-----------
Ignore the arrowannotation itself when determining if the target is an
annotation or not. Refs #4084
Commit: 5708e5409cae60c9ed302f69c290b9c362c122b6
https://github.com/cytoscape/cytoscape-impl/commit/5708e5409cae60c9ed302f69c290b9c362c122b6
Author: Scooter Morris <[email protected]>
Date: 2018-02-15 (Thu, 15 Feb 2018)
Log Message:
-----------
Ignore the arrowannotation itself when determining if the target is an
annotation or not. Refs #4084
Commit: 76a0a03b385d3d2fd020a4c7febec0876a66ab98
https://github.com/cytoscape/cytoscape-impl/commit/76a0a03b385d3d2fd020a4c7febec0876a66ab98
Author: Scooter Morris <[email protected]>
Date: 2018-02-15 (Thu, 15 Feb 2018)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/CyAnnotator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/BoundedTextAnnotationImpl.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/GroupAnnotationImpl.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/ShapeAnnotationImpl.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/ShapeAnnotationFactory.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/listeners/CanvasMouseMotionListener.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/ResizeAnnotationTask.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/ResizeAnnotationTaskFactory.java
Log Message:
-----------
Refs bug #4079. Incremental improvements. Still a lot to do to get it
totally right.
Commit: df6bfea88f79b48cebf6468116d8538d6859a615
https://github.com/cytoscape/cytoscape-impl/commit/df6bfea88f79b48cebf6468116d8538d6859a615
Author: Scooter Morris <[email protected]>
Date: 2018-02-15 (Thu, 15 Feb 2018)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/CyAnnotator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/AbstractAnnotation.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/DingAnnotation.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/GroupAnnotationImpl.java
Log Message:
-----------
More commits resulting from the cherry-pick of
45050f45596e068cb404fcc6c543ae3b6828fac3. These represent some changes
that were incremental but not associated with a particular bug that
45050f45596e068cb404fcc6c543ae3b6828fac3 depends on.
Commit: 68305bd6721fd153b1b53d5ea5cdcc203e2962bf
https://github.com/cytoscape/cytoscape-impl/commit/68305bd6721fd153b1b53d5ea5cdcc203e2962bf
Author: Scooter Morris <[email protected]>
Date: 2018-03-08 (Thu, 08 Mar 2018)
Changed paths:
M core-task-impl/src/main/java/org/cytoscape/task/internal/CyActivator.java
Log Message:
-----------
Fix some network command documentation. Refs #4119, Refs #4117,
Refs #4118
Compare:
https://github.com/cytoscape/cytoscape-impl/compare/31ff5252b13c^...68305bd6721f
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