Branch: refs/heads/master
Home: https://github.com/cytoscape/cytoscape-gui-distribution
Commit: 909bd850fb2bafc87031a80280a713c439fb89f1
https://github.com/cytoscape/cytoscape-gui-distribution/commit/909bd850fb2bafc87031a80280a713c439fb89f1
Author: Keiichiro Ono <[email protected]>
Date: 2018-01-04 (Thu, 04 Jan 2018)
Changed paths:
M application-metadata-impl/pom.xml
M assembly/pom.xml
M branding/pom.xml
M cmdline-impl/pom.xml
M diagnostics/pom.xml
M features/pom.xml
M integration-test/pom.xml
M launcher/pom.xml
M packaging/pom.xml
M pom.xml
M splash-launcher/pom.xml
M splash-updater-impl/pom.xml
M third-party/pom.xml
Log Message:
-----------
Version number updated to 3.6.1
Commit: 66ea2b18c6f75a34d625fc0ac6c499b663b3d4ad
https://github.com/cytoscape/cytoscape-gui-distribution/commit/66ea2b18c6f75a34d625fc0ac6c499b663b3d4ad
Author: Keiichiro Ono <[email protected]>
Date: 2018-01-04 (Thu, 04 Jan 2018)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Wrong app version numbers are manually modified.
Commit: 7ec9d38370950e1761d09b81b83b0c631c2fe4c5
https://github.com/cytoscape/cytoscape-gui-distribution/commit/7ec9d38370950e1761d09b81b83b0c631c2fe4c5
Author: Alexander Pico <[email protected]>
Date: 2018-02-09 (Fri, 09 Feb 2018)
Changed paths:
M assembly/src/main/resources/sampleData/sessions/Yeast Perturbation.cys
Log Message:
-----------
removed unlabled node from sample session
Commit: 29ac431bada489515ff96d1693c32edb1abb96c2
https://github.com/cytoscape/cytoscape-gui-distribution/commit/29ac431bada489515ff96d1693c32edb1abb96c2
Author: Scooter Morris <[email protected]>
Date: 2018-02-15 (Thu, 15 Feb 2018)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Updated cyBrowser to version 1.0.0
Commit: 1b83d8e162f0bee055c0b9ee3b7c7e03a4b052ce
https://github.com/cytoscape/cytoscape-gui-distribution/commit/1b83d8e162f0bee055c0b9ee3b7c7e03a4b052ce
Author: Unknown <[email protected]>
Date: 2018-02-16 (Fri, 16 Feb 2018)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Update CyREST version
Commit: 379694e1200aa1b10e1f01f413534039b4890ae8
https://github.com/cytoscape/cytoscape-gui-distribution/commit/379694e1200aa1b10e1f01f413534039b4890ae8
Author: Barry Demchak <[email protected]>
Date: 2018-03-12 (Mon, 12 Mar 2018)
Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j
Log Message:
-----------
First pass at embedding JRE
(cherry picked from commit b55c2be)
Commit: e20145ae274bd8f850a26225d1e4a10e2e2db070
https://github.com/cytoscape/cytoscape-gui-distribution/commit/e20145ae274bd8f850a26225d1e4a10e2e2db070
Author: Barry Demchak <[email protected]>
Date: 2018-03-12 (Mon, 12 Mar 2018)
Changed paths:
M assembly/src/main/bin/cytoscape.bat
M packaging/src/main/install4j/Cytoscape.install4j
Log Message:
-----------
Cherry picked from 3.7
Commit: 58043223ada1c0ed5f768f5e415e31e6b35eb052
https://github.com/cytoscape/cytoscape-gui-distribution/commit/58043223ada1c0ed5f768f5e415e31e6b35eb052
Author: Barry Demchak <[email protected]>
Date: 2018-03-12 (Mon, 12 Mar 2018)
Changed paths:
M assembly/src/main/bin/cytoscape.bat
Log Message:
-----------
Renamed to 3.6.1
Commit: 7b8e1aee2aeeb2a607963e643ff29fa6927f6c71
https://github.com/cytoscape/cytoscape-gui-distribution/commit/7b8e1aee2aeeb2a607963e643ff29fa6927f6c71
Author: Barry Demchak <[email protected]>
Date: 2018-03-12 (Mon, 12 Mar 2018)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Merge remote-tracking branch 'origin/3.6.1' into 3.6.1
Commit: 5ea96ba095d3420cabe5932b0b0577d3255bafc1
https://github.com/cytoscape/cytoscape-gui-distribution/commit/5ea96ba095d3420cabe5932b0b0577d3255bafc1
Author: Unknown <[email protected]>
Date: 2018-03-13 (Tue, 13 Mar 2018)
Changed paths:
M launcher/src/main/java/org/cytoscape/launcher/internal/Launcher.java
Log Message:
-----------
Cherry Pick JAVA_HOME and karaf terminal output from 3.7
Commit: 4b19db3dedbf40ffae1b5ba0049be0c424d0cdaa
https://github.com/cytoscape/cytoscape-gui-distribution/commit/4b19db3dedbf40ffae1b5ba0049be0c424d0cdaa
Author: Barry Demchak <[email protected]>
Date: 2018-03-15 (Thu, 15 Mar 2018)
Changed paths:
A assembly/src/main/resources/sampleData/sessions/Yeast Gene
Interactions.cys
Log Message:
-----------
Added fixed Costanzo file
Commit: 213b7b8c99c59bc11c93241a1fceada8f5dbfb4a
https://github.com/cytoscape/cytoscape-gui-distribution/commit/213b7b8c99c59bc11c93241a1fceada8f5dbfb4a
Author: Barry Demchak <[email protected]>
Date: 2018-03-15 (Thu, 15 Mar 2018)
Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j
Log Message:
-----------
Changed minimum JVM to 1.8.0_152 instead of 1.8.152
(cherry picked from commit 934fa80)
Commit: 0092ed666a50ed321bc164ca279682243e6b07b7
https://github.com/cytoscape/cytoscape-gui-distribution/commit/0092ed666a50ed321bc164ca279682243e6b07b7
Author: Barry Demchak <[email protected]>
Date: 2018-03-15 (Thu, 15 Mar 2018)
Changed paths:
A assembly/src/main/resources/sampleData/sessions/Yeast Gene
Interactions.cys
Log Message:
-----------
Added repaired Costanzo file
(cherry picked from commit c505b43)
Commit: 3c031e56d32875559356537c9603a3aafb2b5856
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3c031e56d32875559356537c9603a3aafb2b5856
Author: Barry Demchak <[email protected]>
Date: 2018-03-15 (Thu, 15 Mar 2018)
Changed paths:
M assembly/pom.xml
M assembly/src/main/resources/sampleData/sessions/Yeast Perturbation.cys
M packaging/pom.xml
Log Message:
-----------
Fixed Yeast thumbnail, pom.xml had wrong core app versions
Commit: 3dbda0347c42f17c90b0283a9b589ae411998ca3
https://github.com/cytoscape/cytoscape-gui-distribution/commit/3dbda0347c42f17c90b0283a9b589ae411998ca3
Author: Barry Demchak <[email protected]>
Date: 2018-03-15 (Thu, 15 Mar 2018)
Log Message:
-----------
Merge remote-tracking branch 'origin/release/3.6.1' into release/3.6.1
Commit: d4b56fd2e194ad150e90def231ccfdffb797f7fa
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d4b56fd2e194ad150e90def231ccfdffb797f7fa
Author: Barry Demchak <[email protected]>
Date: 2018-03-16 (Fri, 16 Mar 2018)
Changed paths:
A assembly/src/main/resources/sampleData/sessions/Import & Save.cys
Log Message:
-----------
Added NDEx advertisement
Commit: 4e10d62eb90119a8dcce8325ee4ea6655ad587f2
https://github.com/cytoscape/cytoscape-gui-distribution/commit/4e10d62eb90119a8dcce8325ee4ea6655ad587f2
Author: Barry Demchak <[email protected]>
Date: 2018-03-19 (Mon, 19 Mar 2018)
Changed paths:
M assembly/pom.xml
M packaging/pom.xml
Log Message:
-----------
Added CyNDEx-2 as core, added javadoc build
Commit: 355b3a77dcf2d4e1a55150dd86e7bb297cf3f59f
https://github.com/cytoscape/cytoscape-gui-distribution/commit/355b3a77dcf2d4e1a55150dd86e7bb297cf3f59f
Author: Barry Demchak <[email protected]>
Date: 2018-03-19 (Mon, 19 Mar 2018)
Changed paths:
M assembly/src/main/resources/sampleData/sessions/Import & Save.cys
Log Message:
-----------
Updated thumbnail to be slightly smaller
Commit: b1f602e5695413246b1090f2b928c1d2dceb7fa8
https://github.com/cytoscape/cytoscape-gui-distribution/commit/b1f602e5695413246b1090f2b928c1d2dceb7fa8
Author: Unknown <[email protected]>
Date: 2018-03-19 (Mon, 19 Mar 2018)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Update Diffusion app to 1.5.2
Commit: d73d9f47f022f44260e89ec759505191e3e47c3c
https://github.com/cytoscape/cytoscape-gui-distribution/commit/d73d9f47f022f44260e89ec759505191e3e47c3c
Author: Brett Settle <[email protected]>
Date: 2018-03-19 (Mon, 19 Mar 2018)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
core app versions updated
Commit: c6b91d6231f92441955af12add48d97fe4423494
https://github.com/cytoscape/cytoscape-gui-distribution/commit/c6b91d6231f92441955af12add48d97fe4423494
Author: Brett Settle <[email protected]>
Date: 2018-03-19 (Mon, 19 Mar 2018)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
reverted welcome to 3.5.1
Commit: 875d2f9957a25830ba7d65094a0e46273494ec50
https://github.com/cytoscape/cytoscape-gui-distribution/commit/875d2f9957a25830ba7d65094a0e46273494ec50
Author: Barry Demchak <[email protected]>
Date: 2018-03-19 (Mon, 19 Mar 2018)
Changed paths:
M assembly/src/main/resources/sampleData/sessions/Import & Save.cys
Log Message:
-----------
Fixed bad thumbnail
Commit: 546d933e2f6b9f3bbb99880b472753bc18a9baa2
https://github.com/cytoscape/cytoscape-gui-distribution/commit/546d933e2f6b9f3bbb99880b472753bc18a9baa2
Author: Barry Demchak <[email protected]>
Date: 2018-03-20 (Tue, 20 Mar 2018)
Changed paths:
M packaging/src/main/install4j/Cytoscape.install4j
Log Message:
-----------
Lowered JVM range to 1.8.0_151 to accomodate default Linux JVM
Commit: a8f7a7c29124eb338f720590ce3004850d2d56ae
https://github.com/cytoscape/cytoscape-gui-distribution/commit/a8f7a7c29124eb338f720590ce3004850d2d56ae
Author: Brett Settle <[email protected]>
Date: 2018-03-22 (Thu, 22 Mar 2018)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
update sbml reader to 3.3.3
Commit: 5db3c04d8953026aeae7b9075a2bbbc34f497c0a
https://github.com/cytoscape/cytoscape-gui-distribution/commit/5db3c04d8953026aeae7b9075a2bbbc34f497c0a
Author: Barry Demchak <[email protected]>
Date: 2018-03-22 (Thu, 22 Mar 2018)
Changed paths:
M assembly/pom.xml
Log Message:
-----------
Bumped Welcome apps to 3.5.2 to match new app
Compare:
https://github.com/cytoscape/cytoscape-gui-distribution/compare/9f06ff5f3405...5db3c04d8953
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