See <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/4499/changes>
Changes: [brettjsettle] Bump version of CyNDEx2 and Diffusion ------------------------------------------ [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape Karaf Distribution 3.7.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ cytoscape --- [INFO] Deleting <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/ws/target> [INFO] [INFO] --- xml-maven-plugin:1.0:transform (generate-descriptors) @ cytoscape --- Warning: org.apache.xerces.parsers.SAXParser: Feature 'http://javax.xml.XMLConstants/feature/secure-processing' is not recognized. Warning: org.apache.xerces.parsers.SAXParser: Property 'http://javax.xml.XMLConstants/property/accessExternalDTD' is not recognized. Warning: org.apache.xerces.parsers.SAXParser: Property 'http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit' is not recognized. [INFO] Transforming file: <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/ws/src/main/descriptors/config-dev.xml> [INFO] Transforming file: <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/ws/src/main/descriptors/config-unix.xml> [INFO] Transforming file: <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/ws/src/main/descriptors/config-windows.xml> [INFO] Transformed 3 file(s). [INFO] [INFO] --- maven-resources-plugin:2.6:resources (filter) @ cytoscape --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 32 resources [INFO] [INFO] --- karaf-maven-plugin:4.2.0:features-add-to-repository (add-features-to-repo) @ cytoscape --- [WARNING] Old style feature file without namespace found (URI: file:/opt/tomcat-home/jenkins/jobs/cytoscape-3-gui-distribution/workspace/features/target/features.xml). This format is deprecated and support for it will soon be removed [INFO] Using local repository at: file:///opt/tomcat-home/.m2/repository/ [INFO] Copying artifact: org.apache.karaf.features:standard:xml:features:4.2.0 [INFO] Copying artifact: org.ops4j.pax.web:pax-web-features:xml:features:7.0.0 [INFO] Copying artifact: org.cytoscape.distribution:features:xml:features:3.7.0-SNAPSHOT [INFO] Copying artifact: org.apache.felix:org.apache.felix.metatype:jar:1.1.6 [INFO] Copying artifact: org.apache.felix:org.apache.felix.scr:jar:2.0.14 [INFO] Copying artifact: org.apache.karaf.scr:org.apache.karaf.scr.management:jar:4.2.0 [INFO] Copying artifact: org.apache.felix:org.apache.felix.inventory:jar:1.0.4 [INFO] Copying artifact: org.apache.felix:org.apache.felix.webconsole.plugins.ds:jar:2.0.8 [INFO] Copying artifact: org.apache.karaf.scr:org.apache.karaf.scr.state:jar:4.2.0 [INFO] Copying artifact: org.ops4j.pax.web:pax-web-runtime:jar:7.0.0 [INFO] Copying artifact: 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org.eclipse.jetty:jetty-continuation:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-http:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-io:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-jaspi:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-plus:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-jndi:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-rewrite:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-security:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-server:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-servlet:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-servlets:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-util:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-util-ajax:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-webapp:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-jaas:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-xml:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-client:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-deploy:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty:jetty-jmx:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty.websocket:websocket-server:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty.websocket:websocket-client:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty.websocket:websocket-common:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty.websocket:websocket-servlet:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty.websocket:websocket-api:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty.websocket:javax-websocket-server-impl:jar:9.4.6.v20170531 [INFO] Copying artifact: org.eclipse.jetty.websocket:javax-websocket-client-impl:jar:9.4.6.v20170531 [INFO] Copying artifact: javax.websocket:javax.websocket-api:jar:1.1 [INFO] Copying artifact: org.apache.servicemix.specs:org.apache.servicemix.specs.activation-api-1.1:jar:2.9.0 [INFO] Copying artifact: javax.servlet:javax.servlet-api:jar:3.1.0 [INFO] Copying artifact: javax.mail:mail:jar:1.4.7 [INFO] Copying artifact: org.apache.geronimo.specs:geronimo-jta_1.1_spec:jar:1.1.1 [INFO] Copying artifact: javax.annotation:javax.annotation-api:jar:1.2 [INFO] Copying artifact: org.apache.geronimo.specs:geronimo-jaspic_1.0_spec:jar:1.1 [INFO] Copying artifact: org.ow2.asm:asm:jar:6.2 [INFO] Copying artifact: org.ow2.asm:asm-util:jar:6.2 [INFO] Copying artifact: org.ow2.asm:asm-tree:jar:6.2 [INFO] Copying artifact: org.ow2.asm:asm-analysis:jar:6.2 [INFO] Copying artifact: org.ow2.asm:asm-commons:jar:6.2 [INFO] Copying artifact: org.apache.aries.spifly:org.apache.aries.spifly.dynamic.bundle:jar:1.0.10 [INFO] Copying artifact: org.apache.aries:org.apache.aries.util:jar:1.1.3 [INFO] Copying artifact: org.eclipse.jetty:jetty-continuation:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-http:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-io:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-jaspi:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-plus:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-jndi:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-rewrite:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-security:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-server:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-servlet:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-servlets:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-util:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-util-ajax:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-webapp:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-jaas:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-xml:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-client:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-deploy:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty:jetty-jmx:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty.websocket:websocket-server:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty.websocket:websocket-client:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty.websocket:websocket-common:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty.websocket:websocket-servlet:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty.websocket:websocket-api:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty.websocket:javax-websocket-server-impl:jar:9.4.10.v20180503 [INFO] Copying artifact: org.eclipse.jetty.websocket:javax-websocket-client-impl:jar:9.4.10.v20180503 [INFO] Copying artifact: javax.websocket:javax.websocket-api:jar:1.1 [INFO] Copying artifact: org.ops4j.pax.web:pax-web-api:jar:7.0.0 [INFO] Copying artifact: org.ops4j.pax.web:pax-web-spi:jar:7.0.0 [INFO] Copying artifact: org.ow2.asm:asm:jar:6.0 [INFO] Copying artifact: org.ow2.asm:asm-util:jar:6.0 [INFO] Copying artifact: org.ow2.asm:asm-tree:jar:6.0 [INFO] Copying artifact: org.ow2.asm:asm-analysis:jar:6.0 [INFO] Copying artifact: org.ow2.asm:asm-commons:jar:6.0 [INFO] Copying artifact: org.apache.xbean:xbean-bundleutils:jar:4.6 [INFO] Copying artifact: org.apache.xbean:xbean-reflect:jar:4.6 [INFO] Copying artifact: org.apache.xbean:xbean-finder:jar:4.6 [INFO] Copying artifact: org.cytoscape.distribution:diagnostics-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape.distribution:splash-updater-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape.distribution:third-party:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.apache.servicemix.bundles:org.apache.servicemix.bundles.xmlbeans:jar:2.4.0_5 [INFO] Copying artifact: commons-io:commons-io:jar:2.1 [INFO] Copying artifact: cytoscape-temp:uk.ac.ebi.enfin.mi.cluster.micluster:jar:1.6 [INFO] Copying artifact: org.apache.servicemix.specs:org.apache.servicemix.specs.jaxb-api-2.1:jar:1.2.0 [INFO] Copying artifact: org.apache.servicemix.bundles:org.apache.servicemix.bundles.jaxb-impl:jar:2.1.6_1 [INFO] Copying artifact: javax.activation:com.springsource.javax.activation:jar:1.1.1 [INFO] Copying artifact: javax.xml.stream:com.springsource.javax.xml.stream:jar:1.0.1 [INFO] Copying artifact: javax.ws.rs:javax.ws.rs-api:jar:2.1 [INFO] Copying artifact: org.cytoscape:cmdline:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:api-bundle:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape.distribution:cmdline-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:property-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:event-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:util-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:datasource-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:equations-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape.distribution:application-metadata-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:application-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:swing-util-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:model-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:work-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:work-swing-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:work-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:presentation-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:viewmodel-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:vizmap-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:layout-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:group-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:session-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:vizmap-gui-core-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:ding-presentation-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:io-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:core-task-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:command-executor-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:swing-application-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:jobs-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:search-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:table-browser-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:vizmap-gui-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:manual-layout-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:layout-cytoscape-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:webservice-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:editor-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:layout-prefuse-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:linkout-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:table-import-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:filter2-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:graphml-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:edge-bundler-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:app-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:scripting-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:gui-cmdline-parser-impl:jar:3.7.0-SNAPSHOT [INFO] Copying artifact: org.cytoscape:equations-functions-impl:jar:3.7.0-SNAPSHOT [INFO] [INFO] --- karaf-maven-plugin:4.2.0:features-add-to-repository (add-features-to-repo-dev) @ cytoscape --- [WARNING] Old style feature file without namespace found (URI: file:/opt/tomcat-home/jenkins/jobs/cytoscape-3-gui-distribution/workspace/features/target/features.xml). This format is deprecated and support for it will soon be removed [INFO] Using local repository at: file:///opt/tomcat-home/.m2/repository/ [INFO] Copying artifact: org.cytoscape.distribution:features:xml:features:3.7.0-SNAPSHOT [INFO] [INFO] --- maven-dependency-plugin:2.10:copy (copy-dependencies) @ cytoscape --- [INFO] Configured Artifact: org.cytoscape.distribution:branding:3.7.0-SNAPSHOT:jar [INFO] Configured Artifact: org.cytoscape.distribution:karaf-launcher:3.7.0-SNAPSHOT:jar [INFO] Copying branding-3.7.0-SNAPSHOT.jar to <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/ws/target/dependencies/branding/branding-3.7.0-SNAPSHOT.jar> [INFO] Copying karaf-launcher-3.7.0-SNAPSHOT.jar to <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/ws/target/dependencies/launcher/karaf-launcher-3.7.0-SNAPSHOT.jar> [INFO] [INFO] --- maven-dependency-plugin:2.10:copy-dependencies (copy-dependencies) @ cytoscape --- [INFO] Copying apache-karaf-4.2.0.zip to <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/ws/target/bundles/apache-karaf-4.2.0.zip> [INFO] Copying standard-4.2.0-features.xml to <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/ws/target/bundles/standard-4.2.0-features.xml> [INFO] Copying apache-karaf-4.2.0.tar.gz to <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/ws/target/bundles/apache-karaf-4.2.0.tar.gz> [INFO] [INFO] --- maven-dependency-plugin:2.10:unpack (unpack-dependencies) @ cytoscape --- [INFO] Configured Artifact: org.apache.karaf:apache-karaf:?:tar.gz [INFO] Configured Artifact: org.cytoscape.gui-distribution:splash-launcher:3.7.0-SNAPSHOT:jar [INFO] Unpacking /opt/tomcat-home/.m2/repository/org/apache/karaf/apache-karaf/4.2.0/apache-karaf-4.2.0.tar.gz to <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/ws/target/dependencies> with includes "" and excludes "" [INFO] Expanding: /opt/tomcat-home/.m2/repository/org/apache/karaf/apache-karaf/4.2.0/apache-karaf-4.2.0.tar.gz into <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/ws/target/dependencies> [INFO] Unpacking /opt/tomcat-home/jenkins/jobs/cytoscape-3-gui-distribution/workspace/splash-launcher/target/splash-launcher-3.7.0-SNAPSHOT.jar to <http://code.cytoscape.org/jenkins/job/cytoscape-3-gui-distribution/org.cytoscape.distribution$cytoscape/ws/target/dependencies/splash-launcher> with includes "" and excludes "" [INFO] [INFO] --- maven-dependency-plugin:2.10:copy (copy) @ cytoscape --- [INFO] Configured Artifact: org.cytoscape:core-apps-meta:3.4.0:jar [INFO] Configured Artifact: org.cytoscape:biopax:3.3.3:jar [INFO] Configured Artifact: org.cytoscape:json:3.6.2:jar [INFO] Configured Artifact: org.cytoscape:idmapper:3.6.3:jar [INFO] Configured Artifact: org.cytoscape:network-analyzer:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:network-merge:3.3.4:jar [INFO] Configured Artifact: org.cytoscape:psi-mi:3.3.3:jar [INFO] Configured Artifact: org.cytoscape:sbml:3.3.4:jar [INFO] Configured Artifact: org.cytoscape:webservice-biomart-client:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:webservice-psicquic-client:3.4.0:jar [INFO] Configured Artifact: org.cytoscape:cy-rest:3.8.0:jar [INFO] Configured Artifact: org.cytoscape:opencl-cycl:3.5.0:jar [INFO] Configured Artifact: org.cytoscape:opencl-layout:3.5.0:jar [INFO] Configured Artifact: org.cytoscape:welcome:3.5.2:jar [INFO] Configured Artifact: org.cytoscape.diffusion:diffusion:1.5.4:jar Downloading: http://code.cytoscape.org/nexus/content/repositories/releases/org/cytoscape/diffusion/diffusion/1.5.4/diffusion-1.5.4.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/thirdparty/org/cytoscape/diffusion/diffusion/1.5.4/diffusion-1.5.4.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/ops4j-release/org/cytoscape/diffusion/diffusion/1.5.4/diffusion-1.5.4.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/spring-osgi/org/cytoscape/diffusion/diffusion/1.5.4/diffusion-1.5.4.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/spring-osgi-external/org/cytoscape/diffusion/diffusion/1.5.4/diffusion-1.5.4.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/zodiac-release/org/cytoscape/diffusion/diffusion/1.5.4/diffusion-1.5.4.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/zodiac-milestone/org/cytoscape/diffusion/diffusion/1.5.4/diffusion-1.5.4.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/sonatype-oss/org/cytoscape/diffusion/diffusion/1.5.4/diffusion-1.5.4.jar Downloading: http://code.cytoscape.org/nexus/content/repositories/ebi/org/cytoscape/diffusion/diffusion/1.5.4/diffusion-1.5.4.jar Downloading: http://repo.maven.apache.org/maven2/org/cytoscape/diffusion/diffusion/1.5.4/diffusion-1.5.4.jar -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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