Branch: refs/heads/complex-support
Home: https://github.com/PathwayCommons/factoid
Commit: e3dce4b9050e495ce7833f7a9a93a2aab290e88b
https://github.com/PathwayCommons/factoid/commit/e3dce4b9050e495ce7833f7a9a93a2aab290e88b
Author: jvwong <[email protected]>
Date: 2019-03-27 (Wed, 27 Mar 2019)
Changed paths:
A src/server/routes/api/document/filters.js
Log Message:
-----------
Stub out top interactions filter - added filters file
Commit: 9a2bf2a87c05b6d5625bda483faec95ab062aafe
https://github.com/PathwayCommons/factoid/commit/9a2bf2a87c05b6d5625bda483faec95ab062aafe
Author: jvwong <[email protected]>
Date: 2019-03-27 (Wed, 27 Mar 2019)
Changed paths:
M src/server/routes/api/document/filters.js
M src/server/routes/api/document/reach.js
Log Message:
-----------
Adding implementation of top interactions filter.
Commit: e4b89f2f4ec95f2597180e00858f28ac3c64d39d
https://github.com/PathwayCommons/factoid/commit/e4b89f2f4ec95f2597180e00858f28ac3c64d39d
Author: jvwong <[email protected]>
Date: 2019-03-27 (Wed, 27 Mar 2019)
Changed paths:
M src/server/routes/api/document/filters.js
Log Message:
-----------
Clean up function doc.
Commit: aa0a7adfae7027d5fdd1ce2dbfcd6c3106618b0b
https://github.com/PathwayCommons/factoid/commit/aa0a7adfae7027d5fdd1ce2dbfcd6c3106618b0b
Author: jvwong <[email protected]>
Date: 2019-04-05 (Fri, 05 Apr 2019)
Changed paths:
A src/server/routes/api/document/filters.js
Log Message:
-----------
Stub out top interactions filter - added filters file
Commit: 9b89b941f64ebb344b6b54bc026af0e7e5f8dc4b
https://github.com/PathwayCommons/factoid/commit/9b89b941f64ebb344b6b54bc026af0e7e5f8dc4b
Author: jvwong <[email protected]>
Date: 2019-04-05 (Fri, 05 Apr 2019)
Changed paths:
M src/server/routes/api/document/filters.js
M src/server/routes/api/document/reach.js
Log Message:
-----------
Adding implementation of top interactions filter.
Commit: c0183844ec6edd1aa8c91b11c6f773f8bd6a429b
https://github.com/PathwayCommons/factoid/commit/c0183844ec6edd1aa8c91b11c6f773f8bd6a429b
Author: jvwong <[email protected]>
Date: 2019-04-05 (Fri, 05 Apr 2019)
Changed paths:
M src/server/routes/api/document/filters.js
Log Message:
-----------
Clean up function doc.
Commit: 36e155d79735e3a9d092f5a748928a7f51730dff
https://github.com/PathwayCommons/factoid/commit/36e155d79735e3a9d092f5a748928a7f51730dff
Author: jvwong <[email protected]>
Date: 2019-04-08 (Mon, 08 Apr 2019)
Changed paths:
M src/server/routes/api/document/filters.js
Log Message:
-----------
Sort when filtering.
Commit: 2a1783b4640521b443c174a285a640dd05a782a0
https://github.com/PathwayCommons/factoid/commit/2a1783b4640521b443c174a285a640dd05a782a0
Author: jvwong <[email protected]>
Date: 2019-04-08 (Mon, 08 Apr 2019)
Changed paths:
M src/server/routes/api/document/filters.js
Log Message:
-----------
resolving conflicts
Commit: 324cb1cafa3ca02a94066e0f2bd362bbac115d61
https://github.com/PathwayCommons/factoid/commit/324cb1cafa3ca02a94066e0f2bd362bbac115d61
Author: jvwong <[email protected]>
Date: 2019-05-01 (Wed, 01 May 2019)
Changed paths:
M src/server/index.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Using default error handler from ExpressJS.
Commit: 65ebe98340a0da00093be94b86aad4f893292577
https://github.com/PathwayCommons/factoid/commit/65ebe98340a0da00093be94b86aad4f893292577
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
A src/server/routes/api/document/filters.js
M src/server/routes/api/document/reach.js
Log Message:
-----------
Merge pull request #450 from jvwong/iss367_filtering-interactions
Post-REACH interaction filters
Commit: 7f4cd6bef7d5b4b3ab6ff4ee24620904b48a258f
https://github.com/PathwayCommons/factoid/commit/7f4cd6bef7d5b4b3ab6ff4ee24620904b48a258f
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M public/icon.png
M public/icon.svg
M src/client/components/home.js
M src/config.js
M src/server/routes/api/document/index.js
M src/styles/image/logo.svg
M src/views/index.html
Log Message:
-----------
Roll back the name
Commit: bbb92a7327162513d2db6bd0fcf548ebbdc7f51f
https://github.com/PathwayCommons/factoid/commit/bbb92a7327162513d2db6bd0fcf548ebbdc7f51f
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
Log Message:
-----------
Disable the participant arrow ui in the interaction wizard #456
Commit: 024da97fb5f19b85bc56ed0f7870d1b32fbb2ef6
https://github.com/PathwayCommons/factoid/commit/024da97fb5f19b85bc56ed0f7870d1b32fbb2ef6
Author: jvwong <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/server/index.js
Log Message:
-----------
Put back original ExpressJS custom error handling.
Commit: 69236a0fe19003a6bb2f0828cac0d702f672e05d
https://github.com/PathwayCommons/factoid/commit/69236a0fe19003a6bb2f0828cac0d702f672e05d
Author: jvwong <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/server/index.js
Log Message:
-----------
Drop unused variable in error handler.
Commit: 412ae94c15bac95c152fdafc788c872e1b97ab9f
https://github.com/PathwayCommons/factoid/commit/412ae94c15bac95c152fdafc788c872e1b97ab9f
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/index.js
M src/client/components/home.js
M src/client/components/main-menu.js
M src/styles/app.css
M src/styles/help.css
M src/styles/index.css
M src/styles/main-menu.css
Log Message:
-----------
Also video
Commit: b28b56faf49ca831fc4bbaf697cafacb1741238e
https://github.com/PathwayCommons/factoid/commit/b28b56faf49ca831fc4bbaf697cafacb1741238e
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/client/components/main-menu.js
Log Message:
-----------
Lint
Commit: 6a4fb64881c032d5f52b7fb30da4acd1d5bf51d7
https://github.com/PathwayCommons/factoid/commit/6a4fb64881c032d5f52b7fb30da4acd1d5bf51d7
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/server/index.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Merge pull request #462 from jvwong/iss457_doc-route-errors
Document api routes: error handling.
Commit: 1c6b58f6ab2ab1cdb08a63d415c34d353f3ec1f6
https://github.com/PathwayCommons/factoid/commit/1c6b58f6ab2ab1cdb08a63d415c34d353f3ec1f6
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
Log Message:
-----------
Merge pull request #464 from PathwayCommons/intn-wiz-no-arrows
Disable the participant arrow ui in the interaction wizard #456
Commit: 6928a20cf155a83b4ba9df680d8b6d6cceda7bd8
https://github.com/PathwayCommons/factoid/commit/6928a20cf155a83b4ba9df680d8b6d6cceda7bd8
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M public/icon.png
M public/icon.svg
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/index.js
M src/client/components/home.js
M src/client/components/main-menu.js
M src/config.js
M src/server/routes/api/document/index.js
M src/styles/app.css
M src/styles/help.css
M src/styles/image/logo.svg
M src/styles/index.css
M src/styles/main-menu.css
M src/views/index.html
Log Message:
-----------
Merge pull request #463 from PathwayCommons/name2
Roll back the name & video
Commit: 7f8dd3d945a9a2c8339427c858f09186c126057b
https://github.com/PathwayCommons/factoid/commit/7f8dd3d945a9a2c8339427c858f09186c126057b
Author: metincansiper <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/client/components/editor/index.js
M src/model/element/entity.js
Log Message:
-----------
Fixed listeners problem on undo last remove operation, also fixed #465
Commit: 5d12a5618681740253a7da2d4f792908780fb389
https://github.com/PathwayCommons/factoid/commit/5d12a5618681740253a7da2d4f792908780fb389
Author: Max Franz <[email protected]>
Date: 2019-05-08 (Wed, 08 May 2019)
Changed paths:
M src/client/components/editor/index.js
M src/model/element/entity.js
Log Message:
-----------
Merge pull request #467 from metincansiper/undo-rm-listener-fix2
Fixed listeners problem on undo last remove operation, also fixed #465
Commit: f3185b418c025da956c054db315e7644873ec167
https://github.com/PathwayCommons/factoid/commit/f3185b418c025da956c054db315e7644873ec167
Author: jvwong <[email protected]>
Date: 2019-05-08 (Wed, 08 May 2019)
Changed paths:
M src/client/components/editor/index.js
Log Message:
-----------
Updated youtube video for tour.
Commit: 4e2f46e991c11c33471df9ca839bd9fbca611f47
https://github.com/PathwayCommons/factoid/commit/4e2f46e991c11c33471df9ca839bd9fbca611f47
Author: jvwong <[email protected]>
Date: 2019-05-08 (Wed, 08 May 2019)
Changed paths:
M src/client/components/home.js
Log Message:
-----------
Polishing text and updating video.
Commit: 2ff0e1aee5565fcb22dfcd27caf15799e4d0dc23
https://github.com/PathwayCommons/factoid/commit/2ff0e1aee5565fcb22dfcd27caf15799e4d0dc23
Author: Max Franz <[email protected]>
Date: 2019-05-08 (Wed, 08 May 2019)
Changed paths:
M src/client/components/home.js
Log Message:
-----------
Merge pull request #469 from jvwong/polished-home
Polishing text and updating video.
Commit: fc24da1f5e28ea3049c6fd365c634721e1402568
https://github.com/PathwayCommons/factoid/commit/fc24da1f5e28ea3049c6fd365c634721e1402568
Author: Max Franz <[email protected]>
Date: 2019-05-08 (Wed, 08 May 2019)
Changed paths:
M src/client/components/editor/index.js
Log Message:
-----------
Merge pull request #468 from jvwong/tour-video
Updated youtube video for tour.
Commit: e11e0ffdbcf0cbd4044e594bbe26a827850ff917
https://github.com/PathwayCommons/factoid/commit/e11e0ffdbcf0cbd4044e594bbe26a827850ff917
Author: metincansiper <[email protected]>
Date: 2019-05-08 (Wed, 08 May 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
M src/model/element/interaction-type/binding.js
M src/model/element/interaction-type/interaction-type.js
M src/model/element/interaction-type/interaction.js
M src/model/element/interaction-type/modification.js
M src/model/element/interaction-type/transcription-translation.js
Log Message:
-----------
Allow any 'sign' value for Binding interaction 'type' #454
Commit: 7cdf2f244dff171222be3600dc8b795a87e0e195
https://github.com/PathwayCommons/factoid/commit/7cdf2f244dff171222be3600dc8b795a87e0e195
Author: Max Franz <[email protected]>
Date: 2019-05-09 (Thu, 09 May 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
M src/model/element/interaction-type/binding.js
M src/model/element/interaction-type/interaction-type.js
M src/model/element/interaction-type/interaction.js
M src/model/element/interaction-type/modification.js
M src/model/element/interaction-type/transcription-translation.js
Log Message:
-----------
Merge pull request #470 from metincansiper/flex-intntype-ui
Allow any 'sign' value for Binding interaction 'type'
Commit: beeb8788d95887d262cc2c5bceabbf5637e5a999
https://github.com/PathwayCommons/factoid/commit/beeb8788d95887d262cc2c5bceabbf5637e5a999
Author: Max Franz <[email protected]>
Date: 2019-05-09 (Thu, 09 May 2019)
Changed paths:
M src/client/components/editor/index.js
M src/client/components/home.js
Log Message:
-----------
Add rel=0 to youtube videos to avoid related videos list
Commit: 44eca681bf59f60dc6df92aea6d82fd5725d9d76
https://github.com/PathwayCommons/factoid/commit/44eca681bf59f60dc6df92aea6d82fd5725d9d76
Author: metincansiper <[email protected]>
Date: 2019-05-09 (Thu, 09 May 2019)
Changed paths:
M src/client/components/element-info/entity-assoc-display.js
M src/config.js
M src/server/routes/api/document/reach.js
M src/server/routes/api/element-association/aggregate.js
A src/server/routes/api/element-association/grounding-search.js
M src/server/routes/api/element-association/index.js
Log Message:
-----------
Switch between pc grounding search service and current aggregate search
implementation by an env var
Commit: 7b1cdc907f7bf7c15443cb212a0d9e3b3f4df0c0
https://github.com/PathwayCommons/factoid/commit/7b1cdc907f7bf7c15443cb212a0d9e3b3f4df0c0
Author: metincansiper <[email protected]>
Date: 2019-05-09 (Thu, 09 May 2019)
Changed paths:
M src/server/routes/api/element-association/grounding-search.js
Log Message:
-----------
Fixed lint error
Commit: 22aba47643c61756e8d7e799fb5fa789f9a59ec1
https://github.com/PathwayCommons/factoid/commit/22aba47643c61756e8d7e799fb5fa789f9a59ec1
Author: metincansiper <[email protected]>
Date: 2019-05-13 (Mon, 13 May 2019)
Changed paths:
M src/config.js
M src/server/routes/api/element-association/grounding-search.js
Log Message:
-----------
Renamed `GROUNDING_SEARCH_URL` as `GROUNDING_SEARCH_BASE_URL`
Commit: 27b87cb54eea1ccac7187ee926f762469eb9882c
https://github.com/PathwayCommons/factoid/commit/27b87cb54eea1ccac7187ee926f762469eb9882c
Author: Max Franz <[email protected]>
Date: 2019-05-13 (Mon, 13 May 2019)
Changed paths:
M src/client/components/element-info/entity-assoc-display.js
M src/config.js
M src/server/routes/api/document/reach.js
M src/server/routes/api/element-association/aggregate.js
A src/server/routes/api/element-association/grounding-search.js
M src/server/routes/api/element-association/index.js
Log Message:
-----------
Merge pull request #471 from metincansiper/switch-grounding-service
Switch between pc grounding search service and current aggregate search
implementation by using an environment variable
Commit: 9c1b4caf90680f3353816f96718327b05c45c542
https://github.com/PathwayCommons/factoid/commit/9c1b4caf90680f3353816f96718327b05c45c542
Author: metincansiper <[email protected]>
Date: 2019-05-13 (Mon, 13 May 2019)
Changed paths:
M src/client/components/element-info/entity-info.js
Log Message:
-----------
Clicking on an entity when it is on the half way of getting associated with a
gene is causing a bug #472
Commit: 187fe7af539260221dfc7a9ca8b1893cd92d55de
https://github.com/PathwayCommons/factoid/commit/187fe7af539260221dfc7a9ca8b1893cd92d55de
Author: Max Franz <[email protected]>
Date: 2019-05-14 (Tue, 14 May 2019)
Changed paths:
M src/client/components/element-info/entity-info.js
Log Message:
-----------
Merge pull request #475 from metincansiper/multiclient-grounding-bug
Clicking on an entity when it is on the half way of getting associated with a
gene is causing a bug
Commit: 3709de595fd94148408c906e341a38a5b1c65449
https://github.com/PathwayCommons/factoid/commit/3709de595fd94148408c906e341a38a5b1c65449
Author: metincansiper <[email protected]>
Date: 2019-05-15 (Wed, 15 May 2019)
Changed paths:
M public/icon.png
M public/icon.svg
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/index.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/home.js
M src/client/components/main-menu.js
M src/config.js
M src/model/element/complex.js
M src/model/element/entity.js
M src/model/element/interaction-type/binding.js
M src/model/element/interaction-type/interaction-type.js
M src/model/element/interaction-type/interaction.js
M src/model/element/interaction-type/modification.js
M src/model/element/interaction-type/transcription-translation.js
M src/server/index.js
A src/server/routes/api/document/filters.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/reach.js
M src/server/routes/api/element-association/aggregate.js
A src/server/routes/api/element-association/grounding-search.js
M src/server/routes/api/element-association/index.js
M src/styles/app.css
M src/styles/help.css
M src/styles/image/logo.svg
M src/styles/index.css
M src/styles/main-menu.css
M src/views/index.html
Log Message:
-----------
Merge branch 'unstable' into complex-support
Compare:
https://github.com/PathwayCommons/factoid/compare/b0751ad52a06...3709de595fd9
--
You received this message because you are subscribed to the Google Groups
"cytoscape-cvs" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at https://groups.google.com/group/cytoscape-cvs.
To view this discussion on the web visit
https://groups.google.com/d/msgid/cytoscape-cvs/PathwayCommons/factoid/push/refs/heads/complex-support/b0751a-3709de%40github.com.
For more options, visit https://groups.google.com/d/optout.
