Branch: refs/heads/develop
Home: https://github.com/cytoscape/cytoscape-impl
Commit: 70196e2e86acddfe171af6fd2e6ce143f561ef6e
https://github.com/cytoscape/cytoscape-impl/commit/70196e2e86acddfe171af6fd2e6ce143f561ef6e
Author: Christian Lopes <[email protected]>
Date: 2019-03-21 (Thu, 21 Mar 2019)
Changed paths:
M core-task-impl/src/main/java/org/cytoscape/task/internal/CyActivator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/action/GraphicsDetailAction.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/ui/AnnotationMainPanel.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/CyActivator.java
M
filter2-impl/src/main/java/org/cytoscape/filter/internal/FilterCytoPanelComponent.java
M layout-impl/pom.xml
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/CyActivator.java
R
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/ControlPanel.java
A
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/LayoutToolsPanel.java
M swing-application-impl/pom.xml
M
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/actions/CytoPanelAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/command/CommandToolPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/util/SimpleToolBarToggleButton.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/util/ViewUtil.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/BiModalJSplitPane.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenuBar.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewContainer.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/AbstractTableBrowser.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/DefaultTableBrowser.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMainPanel.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
Log Message:
-----------
Improved Cytoscape Desktop with (initial implementation):
- Minimizable CytoPanels
- Tool Panel is no longer inside Control Panel
- "Always Show Graphics Details" toggle button on Network View UI.
Commit: c0434e4f90fd829f6400eda370c582f9a2644e4f
https://github.com/cytoscape/cytoscape-impl/commit/c0434e4f90fd829f6400eda370c582f9a2644e4f
Author: Christian Lopes <[email protected]>
Date: 2019-03-26 (Tue, 26 Mar 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/BiModalJSplitPane.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Fixes hiding split divider (or the whole split pane) when minimizing
CytoPanels.
Commit: 75a122ea11beb710f896885712aa0b885434d3a3
https://github.com/cytoscape/cytoscape-impl/commit/75a122ea11beb710f896885712aa0b885434d3a3
Author: Christian Lopes <[email protected]>
Date: 2019-03-26 (Tue, 26 Mar 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Sorting minimized CytoPanels on the TrimBar.
Commit: c71cc835256c8807e16a770b44878b2934366237
https://github.com/cytoscape/cytoscape-impl/commit/c71cc835256c8807e16a770b44878b2934366237
Author: Christian Lopes <[email protected]>
Date: 2019-03-27 (Wed, 27 Mar 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Deselects toggle button after CytoPanel Component Popup is disposed on focus
lost.
Commit: 503b8a580d0b828737ea6e3c8b71171ce003dcd2
https://github.com/cytoscape/cytoscape-impl/commit/503b8a580d0b828737ea6e3c8b71171ce003dcd2
Author: Christian Lopes <[email protected]>
Date: 2019-03-27 (Wed, 27 Mar 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSearchBar.java
Log Message:
-----------
Fixes a potential Exception.
Commit: c0f60ec12494f9edc7cee74445a105f2c1885a01
https://github.com/cytoscape/cytoscape-impl/commit/c0f60ec12494f9edc7cee74445a105f2c1885a01
Author: Christian Lopes <[email protected]>
Date: 2019-03-27 (Wed, 27 Mar 2019)
Changed paths:
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/LayoutToolsPanel.java
A
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/util/IconUtil.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/command/CommandToolPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/util/IconUtil.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewContainer.java
M swing-util-impl/src/main/resources/fonts/cytoscape-3.ttf
A
table-browser-impl/src/main/java/org/cytoscape/browser/internal/util/IconUtil.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/AbstractTableBrowser.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/DefaultTableBrowser.java
Log Message:
-----------
Changes some CytoPanelComponent icons.
Commit: a26f0f045dcd3d2777afa5c56806144b3c619a74
https://github.com/cytoscape/cytoscape-impl/commit/a26f0f045dcd3d2777afa5c56806144b3c619a74
Author: Christian Lopes <[email protected]>
Date: 2019-03-27 (Wed, 27 Mar 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Fixes exception on Nimbus LAF.
Commit: 543406730e8614b1705d3607a9a0c5f81b11f374
https://github.com/cytoscape/cytoscape-impl/commit/543406730e8614b1705d3607a9a0c5f81b11f374
Author: Christian Lopes <[email protected]>
Date: 2019-04-01 (Mon, 01 Apr 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Adds title to CytoPanelComponent popup and other minor UI adjustments.
Commit: d3efe9b01a412c5cfbcdb3727edcad521be1077f
https://github.com/cytoscape/cytoscape-impl/commit/d3efe9b01a412c5cfbcdb3727edcad521be1077f
Author: Christian Lopes <[email protected]>
Date: 2019-04-02 (Tue, 02 Apr 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Fixes bug where the current TrimStack button is not deselected when disposing
its popup by clicking the background or a button from another stack.
Commit: e048eb251de4535c0a416372d51984d5ce636584
https://github.com/cytoscape/cytoscape-impl/commit/e048eb251de4535c0a416372d51984d5ce636584
Author: Christian Lopes <[email protected]>
Date: 2019-04-04 (Thu, 04 Apr 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Updates TrimStack after a CytoPanelComponent is added/removed. TrimStacks are
always displayed now when a session is loaded with hidden panels, because
there's no CytoPanelState.MINIMIZE state, so HIDE needs to mean "minimized"
all the time, to keep it consistent. Fixes selected Trim Button state when
clicking background.
Commit: 055e0764f18dd2fa5bf1072cf02315f55c192609
https://github.com/cytoscape/cytoscape-impl/commit/055e0764f18dd2fa5bf1072cf02315f55c192609
Author: Christian Lopes <[email protected]>
Date: 2019-04-04 (Thu, 04 Apr 2019)
Changed paths:
M
core-task-impl/src/main/java/org/cytoscape/task/internal/layout/ApplyPreferredLayoutTask.java
M
graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
M
layout-impl/src/main/java/org/cytoscape/view/layout/internal/CyLayoutAlgorithmManagerImpl.java
M
search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearch.java
M
search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchIndex.java
M
search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchManager.java
M
search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchQuery.java
M
search-impl/src/main/java/org/cytoscape/search/internal/IndexAndSearchTask.java
M search-impl/src/main/java/org/cytoscape/search/internal/ReindexTask.java
M
search-impl/src/main/java/org/cytoscape/search/internal/ui/EnhancedSearchPanel.java
M
search-impl/src/main/java/org/cytoscape/search/internal/util/AttributeFields.java
A
search-impl/src/main/java/org/cytoscape/search/internal/util/CaseInsensitiveWhitespaceAnalyzer.java
M
search-impl/src/main/java/org/cytoscape/search/internal/util/CustomMultiFieldQueryParser.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsDialog.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsManager.java
M
table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/CombineNetworkReaderAndMappingTask.java
M
table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/LoadNetworkReaderTask.java
Log Message:
-----------
Merge branch 'develop' into feature/new-desktop
Commit: 8b4d6933466406f21eaeba1c26ac2aa6df394daa
https://github.com/cytoscape/cytoscape-impl/commit/8b4d6933466406f21eaeba1c26ac2aa6df394daa
Author: Christian Lopes <[email protected]>
Date: 2019-04-04 (Thu, 04 Apr 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeToolBar.java
Log Message:
-----------
Resizes tool bar icon if it's larger than the maximum size.
Commit: 715bfda147513114e03d533f428e5b9596282061
https://github.com/cytoscape/cytoscape-impl/commit/715bfda147513114e03d533f428e5b9596282061
Author: Christian Lopes <[email protected]>
Date: 2019-04-04 (Thu, 04 Apr 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Minimizes the Automation panel onto the east bar. Resizes minimized icon if
it's larger than the preferred button size. Show icon as popup title, if
provided title is blank.
Commit: 307d3807f3cc5c876a4b8f4a0915d1d7788c6f81
https://github.com/cytoscape/cytoscape-impl/commit/307d3807f3cc5c876a4b8f4a0915d1d7788c6f81
Author: Christian Lopes <[email protected]>
Date: 2019-04-11 (Thu, 11 Apr 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/SessionHandler.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/actions/BookmarkAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/actions/PreferenceAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/actions/RecentSessionManager.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/BookmarkDialogFactory.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/SettingsAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/util/SimpleToolBarToggleButton.java
R
swing-application-impl/src/main/java/org/cytoscape/internal/util/ViewUtil.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/AbstractNetworkPanelModel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenuPopulator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenus.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/GridViewTogglePanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/MemStatusPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMediator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSearchBar.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSearchMediator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSelectionMediator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewComparisonPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewContainer.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewFrame.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMainPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMediator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewPreviewDialog.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NullNetworkViewPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/SubNetworkPanel.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/MyButtonGroup.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/VerticalButtonUI.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java
Log Message:
-----------
Improved Cytoscape Desktop, version 2:
- Minimizable CytoPanels
- No CytoPanels tabs
- Left/Right/Bottom bars
Commit: 5a61c5ae12994caa212d00a45be23a728a7c3df9
https://github.com/cytoscape/cytoscape-impl/commit/5a61c5ae12994caa212d00a45be23a728a7c3df9
Author: Christian Lopes <[email protected]>
Date: 2019-04-16 (Tue, 16 Apr 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/action/GraphicsDetailAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/actions/CytoPanelAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelNameInternal.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Adds option to show/hide CytoPanel button labels. Changes CytoPanelAction
labels (menu items) and it now removes the cytopanels from de side bars. When
CytoPanel buttons don't fit in the side bar, the bar now adds extra columns
(left/right bars) or rows (bottom bar).
Commit: 34e7c9a7d9180d79bee5a4560bd08ae1ad53fe45
https://github.com/cytoscape/cytoscape-impl/commit/34e7c9a7d9180d79bee5a4560bd08ae1ad53fe45
Author: Christian Lopes <[email protected]>
Date: 2019-04-17 (Wed, 17 Apr 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Creates CyProperty "sideBar.showLabels". Fixes a couple of bugs.
Commit: 8fd37fccaf1c65a59d3df31a116c571c56515384
https://github.com/cytoscape/cytoscape-impl/commit/8fd37fccaf1c65a59d3df31a116c571c56515384
Author: Christian Lopes <[email protected]>
Date: 2019-04-17 (Wed, 17 Apr 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
R
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/MyButtonGroup.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ToggleableButtonGroup.java
Log Message:
-----------
Fixes a couple of bugs related to the selection state of Sidebar buttons when
minimizing a cytopanel.
Commit: b3577bc2e2ced850ad6ccae36c558a1b4c2883ef
https://github.com/cytoscape/cytoscape-impl/commit/b3577bc2e2ced850ad6ccae36c558a1b4c2883ef
Author: Christian Lopes <[email protected]>
Date: 2019-04-18 (Thu, 18 Apr 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ToggleableButtonGroup.java
Log Message:
-----------
Fixes bug that prevented a minimized cytopanel's button from showing its
popup when another cytopanel's button with same index was previously selected.
Commit: 3be977c273de1328650e40e891c2a52e3ea30e71
https://github.com/cytoscape/cytoscape-impl/commit/3be977c273de1328650e40e891c2a52e3ea30e71
Author: Christian Lopes <[email protected]>
Date: 2019-04-18 (Thu, 18 Apr 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ToggleableButtonGroup.java
Log Message:
-----------
Fixes more bugs that affected the selection state of sidebar buttons.
Commit: 738f3f6ee620fc464e783b2423572b736d9d85f2
https://github.com/cytoscape/cytoscape-impl/commit/738f3f6ee620fc464e783b2423572b736d9d85f2
Author: Christian Lopes <[email protected]>
Date: 2019-04-18 (Thu, 18 Apr 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Fixes empty popup when removing a minimized/unpinned cytopanel. Improves
popup preferred size.
Commit: 17767c44fb7e47bb58885b184e86c36f779952ff
https://github.com/cytoscape/cytoscape-impl/commit/17767c44fb7e47bb58885b184e86c36f779952ff
Author: Christian Lopes <[email protected]>
Date: 2019-04-18 (Thu, 18 Apr 2019)
Changed paths:
M
swing-application-impl/src/test/java/org/cytoscape/internal/view/CytoscapeDesktopTest.java
Log Message:
-----------
Fixes unit tests errors.
Commit: 36893aacd0b20126380bc76eb77a3d5f39b69679
https://github.com/cytoscape/cytoscape-impl/commit/36893aacd0b20126380bc76eb77a3d5f39b69679
Author: Christian Lopes <[email protected]>
Date: 2019-04-29 (Mon, 29 Apr 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewContainer.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/SubNetworkPanel.java
Log Message:
-----------
Better foreground colours for disabled and "info" text.
Commit: 744332d9200e7ab417fecc934a0e96d3a549bd98
https://github.com/cytoscape/cytoscape-impl/commit/744332d9200e7ab417fecc934a0e96d3a549bd98
Author: Christian Lopes <[email protected]>
Date: 2019-05-03 (Fri, 03 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Fixes sidebar button click bug. Fixes refreshing bug and reduces flickering
when switching cytopanel popup's content.
Commit: aace0c524c18c39a69495f6229a5f6153037db74
https://github.com/cytoscape/cytoscape-impl/commit/aace0c524c18c39a69495f6229a5f6153037db74
Author: Christian Lopes <[email protected]>
Date: 2019-05-10 (Fri, 10 May 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/ui/AnnotationMainPanel.java
M
filter2-impl/src/main/java/org/cytoscape/filter/internal/view/FilterPanel.java
M
filter2-impl/src/main/java/org/cytoscape/filter/internal/view/TransformerPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeToolBar.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMainPanel.java
Log Message:
-----------
Better LAF and some general UI tweaks for new design.
Commit: b4f48616de069cd6ee27d81266df802159edc8be
https://github.com/cytoscape/cytoscape-impl/commit/b4f48616de069cd6ee27d81266df802159edc8be
Author: Christian Lopes <[email protected]>
Date: 2019-05-10 (Fri, 10 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Adding the undocked cytopanel popups to the frame's glassPane instead of
using dialogs.
Commit: 4792ccec97af6f8f9192b5aaa23de5a39ff260a5
https://github.com/cytoscape/cytoscape-impl/commit/4792ccec97af6f8f9192b5aaa23de5a39ff260a5
Author: Christian Lopes <[email protected]>
Date: 2019-05-10 (Fri, 10 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Updates the cytopanel popup bounds when the desktop is resized.
Commit: ae3e56e31f1b6cb39eb3f0e0a1d4b844d9b1c6eb
https://github.com/cytoscape/cytoscape-impl/commit/ae3e56e31f1b6cb39eb3f0e0a1d4b844d9b1c6eb
Author: Christian Lopes <[email protected]>
Date: 2019-05-11 (Sat, 11 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Hides the cytopanel popup when mouse-pressing the "background" (works a lot
better than the previous JDialog version).
Commit: f6a022757a3bb41070bc668b9a4a1e497b53f670
https://github.com/cytoscape/cytoscape-impl/commit/f6a022757a3bb41070bc668b9a4a1e497b53f670
Author: Christian Lopes <[email protected]>
Date: 2019-05-11 (Sat, 11 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSearchBar.java
Log Message:
-----------
Minor fixes.
Commit: 5e9f040a296007b18a3667a5f96e791bff36aa60
https://github.com/cytoscape/cytoscape-impl/commit/5e9f040a296007b18a3667a5f96e791bff36aa60
Author: Christian Lopes <[email protected]>
Date: 2019-05-13 (Mon, 13 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Unpinned cytopanel can now be resized manually. Also, double-click its title
to maximize it (when unpinned only).
Commit: 6ea0bd81326648f3161a680430ceba1c1dcbb1b4
https://github.com/cytoscape/cytoscape-impl/commit/6ea0bd81326648f3161a680430ceba1c1dcbb1b4
Author: Christian Lopes <[email protected]>
Date: 2019-05-14 (Tue, 14 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Fixes unpinned cytopanel position on Nimbus and Windows.
Commit: 4520f5facf0f67c8cca2f3bd032dcd5970d4491b
https://github.com/cytoscape/cytoscape-impl/commit/4520f5facf0f67c8cca2f3bd032dcd5970d4491b
Author: Christian Lopes <[email protected]>
Date: 2019-05-14 (Tue, 14 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Fixes incorrect location of resized unpinned cytopanels on Nimbus and Windows.
Commit: 269ee975f5c77e3dc1c5c7325e6e2a80c8ff9336
https://github.com/cytoscape/cytoscape-impl/commit/269ee975f5c77e3dc1c5c7325e6e2a80c8ff9336
Author: Christian Lopes <[email protected]>
Date: 2019-05-14 (Tue, 14 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
Log Message:
-----------
Better splitpane border o Win and Nimbus.
Commit: 8937d521c3d683aa51cc8406ba1a39e17fae524e
https://github.com/cytoscape/cytoscape-impl/commit/8937d521c3d683aa51cc8406ba1a39e17fae524e
Author: Christian Lopes <[email protected]>
Date: 2019-05-15 (Wed, 15 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/ExpandCollapseButton.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanel.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
Log Message:
-----------
Using the native OS/LAF icons for expand/collapse buttons on Network and
Style panels.
Commit: 60753346f78e5661eb180c591d3e114a5df51d22
https://github.com/cytoscape/cytoscape-impl/commit/60753346f78e5661eb180c591d3e114a5df51d22
Author: Christian Lopes <[email protected]>
Date: 2019-05-20 (Mon, 20 May 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/ui/AnnotationMainPanel.java
Log Message:
-----------
Changes Annotation panel's icon
Commit: dbcd22b0875cf38eb67afd383a1d094f4906d21d
https://github.com/cytoscape/cytoscape-impl/commit/dbcd22b0875cf38eb67afd383a1d094f4906d21d
Author: Christian Lopes <[email protected]>
Date: 2019-05-20 (Mon, 20 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ToggleableButtonGroup.java
Log Message:
-----------
Fixes ToggleableButtonGroup so a button's 'group' property is not
inadvertently set to null when the button does not belong to the group we are
trying to remove it from.
Commit: 7b4dabeba82b9dde5b3ee3e7e134bea143de358b
https://github.com/cytoscape/cytoscape-impl/commit/7b4dabeba82b9dde5b3ee3e7e134bea143de358b
Author: Christian Lopes <[email protected]>
Date: 2019-05-21 (Tue, 21 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/actions/CytoPanelAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelStateInternal.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java
Log Message:
-----------
Adds CytoPanelStateInternal enum to handle the new states without adding
breaking API changes. Separates Float/Dock buttons. Adds Undock context-menu
option. Adds "Show CytoPanel" items to sidebar context-menu.
Commit: 81daa23269b5d9437fa9c81ecc8ee326d932d8cf
https://github.com/cytoscape/cytoscape-impl/commit/81daa23269b5d9437fa9c81ecc8ee326d932d8cf
Author: Christian Lopes <[email protected]>
Date: 2019-05-21 (Tue, 21 May 2019)
Changed paths:
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/LayoutToolsPanel.java
Log Message:
-----------
Changes CytoPanel title to the shorter "Layout Tools".
Commit: f769d4dff931b0382f2891b780defe8b98cce26c
https://github.com/cytoscape/cytoscape-impl/commit/f769d4dff931b0382f2891b780defe8b98cce26c
Author: Christian Lopes <[email protected]>
Date: 2019-05-21 (Tue, 21 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ToggleableButtonGroup.java
Log Message:
-----------
Fixes ToggleableButtonGroup to be able to always return a selected button if
there is a selected model.
Commit: 53b0b5d130aa82d9967ef7fdcd944dcfe6eb1cfd
https://github.com/cytoscape/cytoscape-impl/commit/53b0b5d130aa82d9967ef7fdcd944dcfe6eb1cfd
Author: Christian Lopes <[email protected]>
Date: 2019-05-21 (Tue, 21 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
Fixes bug where floating panel is not disposed when setting the state to
UNDOCK.
Commit: 455b3b0ea74ad8be131d4e01bc51e39f11c8c3f0
https://github.com/cytoscape/cytoscape-impl/commit/455b3b0ea74ad8be131d4e01bc51e39f11c8c3f0
Author: Christian Lopes <[email protected]>
Date: 2019-05-22 (Wed, 22 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/SessionHandler.java
R swing-application-impl/src/main/resources/credits.txt
M swing-application-impl/src/main/resources/xsd/sessionState.xsd
Log Message:
-----------
CytoPanelStateInternal is now saved in the session file so the new
minimized/undocked panel states can be restored.
Commit: 885d5cf2ad330f5c03240630dd63164ec6e353f1
https://github.com/cytoscape/cytoscape-impl/commit/885d5cf2ad330f5c03240630dd63164ec6e353f1
Author: Christian Lopes <[email protected]>
Date: 2019-05-22 (Wed, 22 May 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/util/IconUtil.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M swing-util-impl/src/main/resources/fonts/cytoscape-3.ttf
Log Message:
-----------
Adds UNDOCK button and icon.
Commit: 7741ca7e0210e20ab03f17ef9ed52fa854bb09da
https://github.com/cytoscape/cytoscape-impl/commit/7741ca7e0210e20ab03f17ef9ed52fa854bb09da
Author: Christian Lopes <[email protected]>
Date: 2019-05-22 (Wed, 22 May 2019)
Changed paths:
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/AlignPanel.java
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/DistPanel.java
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/LayoutToolsPanel.java
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/StackPanel.java
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/rotate/RotatePanel.java
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/scale/ScalePanel.java
Log Message:
-----------
Fixes Layout Tools panel's margins (ContainerGaps). Also disables the labels
when their corresponding tool is disabled.
Commit: e195d18e498428ed20a77a0dee21c8b7b8a77aed
https://github.com/cytoscape/cytoscape-impl/commit/e195d18e498428ed20a77a0dee21c8b7b8a77aed
Author: Christian Lopes <[email protected]>
Date: 2019-05-22 (Wed, 22 May 2019)
Changed paths:
M core-task-impl/src/main/java/org/cytoscape/task/internal/CyActivator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/action/GraphicsDetailAction.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/ui/AnnotationMainPanel.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/CyActivator.java
M
filter2-impl/src/main/java/org/cytoscape/filter/internal/FilterCytoPanelComponent.java
M
filter2-impl/src/main/java/org/cytoscape/filter/internal/view/FilterPanel.java
M
filter2-impl/src/main/java/org/cytoscape/filter/internal/view/TransformerPanel.java
M layout-impl/pom.xml
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/CyActivator.java
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/AlignPanel.java
R
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/ControlPanel.java
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/DistPanel.java
A
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/LayoutToolsPanel.java
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/StackPanel.java
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/rotate/RotatePanel.java
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/scale/ScalePanel.java
A
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/util/IconUtil.java
M swing-application-impl/pom.xml
M
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/SessionHandler.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/actions/BookmarkAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/actions/CytoPanelAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/actions/PreferenceAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/actions/RecentSessionManager.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/command/CommandToolPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/BookmarkDialogFactory.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/SettingsAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/util/IconUtil.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/util/SimpleToolBarToggleButton.java
R
swing-application-impl/src/main/java/org/cytoscape/internal/util/ViewUtil.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/AbstractNetworkPanelModel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/BiModalJSplitPane.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelNameInternal.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelStateInternal.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenuBar.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenuPopulator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenus.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeToolBar.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/ExpandCollapseButton.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/GridViewTogglePanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/MemStatusPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMediator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSearchBar.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSearchMediator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSelectionMediator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewComparisonPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewContainer.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewFrame.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMainPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMediator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewPreviewDialog.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NullNetworkViewPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/SubNetworkPanel.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ToggleableButtonGroup.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/VerticalButtonUI.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java
R swing-application-impl/src/main/resources/credits.txt
M swing-application-impl/src/main/resources/xsd/sessionState.xsd
M
swing-application-impl/src/test/java/org/cytoscape/internal/view/CytoscapeDesktopTest.java
M swing-util-impl/src/main/resources/fonts/cytoscape-3.ttf
A
table-browser-impl/src/main/java/org/cytoscape/browser/internal/util/IconUtil.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/AbstractTableBrowser.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/DefaultTableBrowser.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMainPanel.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
Log Message:
-----------
Merge branch 'feature/new-desktop-2' into develop
Compare:
https://github.com/cytoscape/cytoscape-impl/compare/93fbcfa159d0...e195d18e4984
--
You received this message because you are subscribed to the Google Groups
"cytoscape-cvs" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at https://groups.google.com/group/cytoscape-cvs.
To view this discussion on the web visit
https://groups.google.com/d/msgid/cytoscape-cvs/cytoscape/cytoscape-impl/push/refs/heads/develop/93fbcf-e195d1%40github.com.
For more options, visit https://groups.google.com/d/optout.
