Branch: refs/heads/master
Home: https://github.com/PathwayCommons/factoid
Commit: d5338b7436eb95f66ca2c0e069f7c39e96d12b50
https://github.com/PathwayCommons/factoid/commit/d5338b7436eb95f66ca2c0e069f7c39e96d12b50
Author: Max Franz <[email protected]>
Date: 2019-01-30 (Wed, 30 Jan 2019)
Changed paths:
M src/client/components/element-info/entity-info.js
Log Message:
-----------
Always call `progression.goToStage()` to make sure that component `data` is
always correct for rendering
Ref : Node tooltip notification name refers to last node tooltip clicked #422
Commit: 9be09304a29f8db3ecfeb47cebbdaf48bac0be3f
https://github.com/PathwayCommons/factoid/commit/9be09304a29f8db3ecfeb47cebbdaf48bac0be3f
Author: Max Franz <[email protected]>
Date: 2019-01-31 (Thu, 31 Jan 2019)
Changed paths:
M src/client/components/element-info/entity-info.js
Log Message:
-----------
Merge pull request #425 from PathwayCommons/tooltip-422
Always call `progression.goToStage()` to make sure that component `data` is
always correct for rendering
Commit: bcfea8ffb55530a15352a68602642e543777c86c
https://github.com/PathwayCommons/factoid/commit/bcfea8ffb55530a15352a68602642e543777c86c
Author: jvwong <[email protected]>
Date: 2019-03-08 (Fri, 08 Mar 2019)
Changed paths:
M src/server/routes/api/document/index.js
M src/server/routes/api/document/reach.js
Log Message:
-----------
Filtering for acceptable complex-assembly and control-type events
Commit: 6218c259f9c562587492f38fe0748d7727fe6da3
https://github.com/PathwayCommons/factoid/commit/6218c259f9c562587492f38fe0748d7727fe6da3
Author: jvwong <[email protected]>
Date: 2019-03-11 (Mon, 11 Mar 2019)
Changed paths:
M src/server/routes/api/document/reach.js
Log Message:
-----------
Switching ON remove ungrounded entities.
Commit: ec6964a266c0e98f10c9f0abc3cd7c592aaa0fc3
https://github.com/PathwayCommons/factoid/commit/ec6964a266c0e98f10c9f0abc3cd7c592aaa0fc3
Author: jvwong <[email protected]>
Date: 2019-03-11 (Mon, 11 Mar 2019)
Changed paths:
M src/server/routes/api/document/index.js
M src/server/routes/api/document/reach.js
Log Message:
-----------
Drop testing endpoint. Always return value (including null) for frame entity.
Commit: 243243654c53fc97c59e7ee08a4df3a02467dbff
https://github.com/PathwayCommons/factoid/commit/243243654c53fc97c59e7ee08a4df3a02467dbff
Author: jvwong <[email protected]>
Date: 2019-03-11 (Mon, 11 Mar 2019)
Changed paths:
M src/server/routes/api/document/reach.js
Log Message:
-----------
More descriptive variable for unique particpants.
Commit: ec03e7eb03b6d69ea883a2db5ea75f66eb3824c6
https://github.com/PathwayCommons/factoid/commit/ec03e7eb03b6d69ea883a2db5ea75f66eb3824c6
Author: jvwong <[email protected]>
Date: 2019-03-11 (Mon, 11 Mar 2019)
Changed paths:
M src/server/routes/api/document/reach.js
Log Message:
-----------
Drop debug reach output in elements output.
Commit: 6545185bd17807d28cb3a5d325d97f19ddf14d17
https://github.com/PathwayCommons/factoid/commit/6545185bd17807d28cb3a5d325d97f19ddf14d17
Author: jvwong <[email protected]>
Date: 2019-03-11 (Mon, 11 Mar 2019)
Changed paths:
M src/server/routes/api/document/reach.js
Log Message:
-----------
Refactoring filtering on entities and interactions.
Commit: 58688b4aef514dcf9aea20bc7182fcdeb4f732a4
https://github.com/PathwayCommons/factoid/commit/58688b4aef514dcf9aea20bc7182fcdeb4f732a4
Author: jvwong <[email protected]>
Date: 2019-03-11 (Mon, 11 Mar 2019)
Changed paths:
M src/server/routes/api/document/reach.js
Log Message:
-----------
Remove ungrounded entities switch ON
Commit: 30d3074b97fe4a4378f2c64b9488636acc489346
https://github.com/PathwayCommons/factoid/commit/30d3074b97fe4a4378f2c64b9488636acc489346
Author: Max Franz <[email protected]>
Date: 2019-03-18 (Mon, 18 Mar 2019)
Changed paths:
R src/client/components/debug-document-seeder.js
R src/client/components/debug.js
R src/client/components/demo-input.js
R src/client/components/document-renamer.js
R src/client/components/document-wizard-stepper.js
R src/client/components/example-document.js
M src/client/components/home.js
R src/client/components/interval-highlighter.js
M src/client/components/main-menu.js
R src/client/components/my-factoids.js
R src/client/components/organism-toggle.js
R src/client/components/reach-interval-highlighter.js
M src/client/router.js
R src/styles/debug-document-seeder.css
R src/styles/debug.css
R src/styles/demo-input.css
R src/styles/document-view-chooser.css
R src/styles/document-wizard-stepper.css
M src/styles/editor/editor.css
R src/styles/example-document.css
M src/styles/index.css
R src/styles/my-factoids.css
R src/styles/organism-toggle.css
R src/styles/reach-interval-highlighter.css
Log Message:
-----------
Remove unused code and disable components that are extraneous to the pilot
Commit: 1bd2339d7c9011b4a64d022ffdf8a06023948640
https://github.com/PathwayCommons/factoid/commit/1bd2339d7c9011b4a64d022ffdf8a06023948640
Author: Max Franz <[email protected]>
Date: 2019-03-18 (Mon, 18 Mar 2019)
Changed paths:
M package-lock.json
Log Message:
-----------
Update the lock file
Commit: ae334abd16c1c296e78ad6d3f81e911973fb8241
https://github.com/PathwayCommons/factoid/commit/ae334abd16c1c296e78ad6d3f81e911973fb8241
Author: Max Franz <[email protected]>
Date: 2019-03-18 (Mon, 18 Mar 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
Log Message:
-----------
Allow interaction wizard completion as long as the interaction is associated
with a type (even if the participants are untyped)
Commit: 75101c1047ab5998469b5f50a329f9bc261efe21
https://github.com/PathwayCommons/factoid/commit/75101c1047ab5998469b5f50a329f9bc261efe21
Author: Max Franz <[email protected]>
Date: 2019-03-18 (Mon, 18 Mar 2019)
Changed paths:
M src/styles/popover/tippy.css
Log Message:
-----------
Force the tippy to disable movement animations. This prevents the issue
where a tippy can be badly positioned, seemingly because the tippy lib does not
correctly find the bounds if the element is in motion.
Commit: db642a8474bfac86f3cabcda15454d90e17bf16f
https://github.com/PathwayCommons/factoid/commit/db642a8474bfac86f3cabcda15454d90e17bf16f
Author: Max Franz <[email protected]>
Date: 2019-03-18 (Mon, 18 Mar 2019)
Changed paths:
M src/client/components/element-info/entity-assoc-display.js
Log Message:
-----------
Remove PC linkout in entity info display
Commit: 2d4ee44d0d39d38becb0b6dd5c76be0d4a5d9085
https://github.com/PathwayCommons/factoid/commit/2d4ee44d0d39d38becb0b6dd5c76be0d4a5d9085
Author: Max Franz <[email protected]>
Date: 2019-03-18 (Mon, 18 Mar 2019)
Changed paths:
M src/client/components/tasks.js
Log Message:
-----------
Revise submission message
Commit: 49ba9d0e35a1355a0b45c64ecc791a6e7c90bcd6
https://github.com/PathwayCommons/factoid/commit/49ba9d0e35a1355a0b45c64ecc791a6e7c90bcd6
Author: Max Franz <[email protected]>
Date: 2019-03-18 (Mon, 18 Mar 2019)
Changed paths:
M src/server/routes/api/document/reach.js
Log Message:
-----------
Merge pull request #436 from jvwong/iss432_restrict-reach-binary
Reach import: Restrict to binary interaction types
Commit: b6e130ff2f401c40a57b0dde1dc197adc1878821
https://github.com/PathwayCommons/factoid/commit/b6e130ff2f401c40a57b0dde1dc197adc1878821
Author: Max Franz <[email protected]>
Date: 2019-03-18 (Mon, 18 Mar 2019)
Changed paths:
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/tasks.js
Log Message:
-----------
Fix lint error re. PC URL
Commit: 7f8cdf609c5f8dd3f01cadcd77f8240f4fac880c
https://github.com/PathwayCommons/factoid/commit/7f8cdf609c5f8dd3f01cadcd77f8240f4fac880c
Author: Max Franz <[email protected]>
Date: 2019-03-18 (Mon, 18 Mar 2019)
Changed paths:
M test/syncher.js
Log Message:
-----------
Make the "pulls simultaneously on each client" test a bit more tolerant of
potentially slow test environments like Travis
Commit: 58d28705f27a282296fd097f4643f842d9672161
https://github.com/PathwayCommons/factoid/commit/58d28705f27a282296fd097f4643f842d9672161
Author: Max Franz <[email protected]>
Date: 2019-03-19 (Tue, 19 Mar 2019)
Changed paths:
M src/styles/popover/tippy.css
Log Message:
-----------
Merge pull request #442 from PathwayCommons/tippy-animation-position
Force the tippy to disable movement animations. This prevents the is…
Commit: d8d6784c2a411f3cb2a06d2046f8d3def411e99c
https://github.com/PathwayCommons/factoid/commit/d8d6784c2a411f3cb2a06d2046f8d3def411e99c
Author: Max Franz <[email protected]>
Date: 2019-03-19 (Tue, 19 Mar 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
Log Message:
-----------
Merge pull request #439 from PathwayCommons/cant-complete-intn
Allow interaction wizard completion as long as the interaction is ass…
Commit: bcadd9d57e506880a034f56a54c23d05070f29a7
https://github.com/PathwayCommons/factoid/commit/bcadd9d57e506880a034f56a54c23d05070f29a7
Author: Max Franz <[email protected]>
Date: 2019-03-19 (Tue, 19 Mar 2019)
Changed paths:
M package-lock.json
R src/client/components/debug-document-seeder.js
R src/client/components/debug.js
R src/client/components/demo-input.js
R src/client/components/document-renamer.js
R src/client/components/document-wizard-stepper.js
M src/client/components/element-info/entity-assoc-display.js
R src/client/components/example-document.js
M src/client/components/home.js
R src/client/components/interval-highlighter.js
M src/client/components/main-menu.js
R src/client/components/my-factoids.js
R src/client/components/organism-toggle.js
R src/client/components/reach-interval-highlighter.js
M src/client/components/tasks.js
M src/client/router.js
R src/styles/debug-document-seeder.css
R src/styles/debug.css
R src/styles/demo-input.css
R src/styles/document-view-chooser.css
R src/styles/document-wizard-stepper.css
M src/styles/editor/editor.css
R src/styles/example-document.css
M src/styles/index.css
R src/styles/my-factoids.css
R src/styles/organism-toggle.css
R src/styles/reach-interval-highlighter.css
M test/syncher.js
Log Message:
-----------
Merge pull request #440 from PathwayCommons/one-user-pilot
One user pilot tweaks
Commit: 912ab24b10b1cd7a47d9b40a7145e60577d9d7f8
https://github.com/PathwayCommons/factoid/commit/912ab24b10b1cd7a47d9b40a7145e60577d9d7f8
Author: Max Franz <[email protected]>
Date: 2019-03-19 (Tue, 19 Mar 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
Log Message:
-----------
Make the "no info available" display for interaction popovers the same as for
entity popovers
Because an interaction is always created with an association/type, you will at
least see the text for the general/other interaction type.
Commit: 6ae5265eb527d00e5fc7b042be197df8fbab8d09
https://github.com/PathwayCommons/factoid/commit/6ae5265eb527d00e5fc7b042be197df8fbab8d09
Author: Max Franz <[email protected]>
Date: 2019-03-20 (Wed, 20 Mar 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
Log Message:
-----------
Merge pull request #445 from PathwayCommons/intn-readonly-display
Make the "no info available" display for interaction popovers the sam…
Commit: bee7398fb0add7f6e0db1640d78ae79f189e0f99
https://github.com/PathwayCommons/factoid/commit/bee7398fb0add7f6e0db1640d78ae79f189e0f99
Author: Max Franz <[email protected]>
Date: 2019-03-21 (Thu, 21 Mar 2019)
Changed paths:
M src/client/components/document-seeder.js
M src/client/components/editor/index.js
M src/client/components/home.js
M src/server/routes/api/document/index.js
M src/styles/image/author-workflow.svg
M src/views/index.html
Log Message:
-----------
Update public project name
Commit: f25d3bac0323d2dc26cbfc1711c80cd82208b7c9
https://github.com/PathwayCommons/factoid/commit/f25d3bac0323d2dc26cbfc1711c80cd82208b7c9
Author: Max Franz <[email protected]>
Date: 2019-03-21 (Thu, 21 Mar 2019)
Changed paths:
M src/config.js
M src/server/email-transport.js
Log Message:
-----------
Set up SMTP
Commit: e3dce4b9050e495ce7833f7a9a93a2aab290e88b
https://github.com/PathwayCommons/factoid/commit/e3dce4b9050e495ce7833f7a9a93a2aab290e88b
Author: jvwong <[email protected]>
Date: 2019-03-27 (Wed, 27 Mar 2019)
Changed paths:
A src/server/routes/api/document/filters.js
Log Message:
-----------
Stub out top interactions filter - added filters file
Commit: 9a2bf2a87c05b6d5625bda483faec95ab062aafe
https://github.com/PathwayCommons/factoid/commit/9a2bf2a87c05b6d5625bda483faec95ab062aafe
Author: jvwong <[email protected]>
Date: 2019-03-27 (Wed, 27 Mar 2019)
Changed paths:
M src/server/routes/api/document/filters.js
M src/server/routes/api/document/reach.js
Log Message:
-----------
Adding implementation of top interactions filter.
Commit: e4b89f2f4ec95f2597180e00858f28ac3c64d39d
https://github.com/PathwayCommons/factoid/commit/e4b89f2f4ec95f2597180e00858f28ac3c64d39d
Author: jvwong <[email protected]>
Date: 2019-03-27 (Wed, 27 Mar 2019)
Changed paths:
M src/server/routes/api/document/filters.js
Log Message:
-----------
Clean up function doc.
Commit: 2fefb01078407ddf78465eceae8fdfbb7423fc27
https://github.com/PathwayCommons/factoid/commit/2fefb01078407ddf78465eceae8fdfbb7423fc27
Author: Max Franz <[email protected]>
Date: 2019-03-28 (Thu, 28 Mar 2019)
Changed paths:
M src/client/components/home.js
M src/styles/home.css
A src/styles/image/curve-menten.svg
A src/styles/image/infographic-authors.svg
Log Message:
-----------
Update the home page
Commit: 9a4f550bea45eb0bd59f406ce100e7c2b7441681
https://github.com/PathwayCommons/factoid/commit/9a4f550bea45eb0bd59f406ce100e7c2b7441681
Author: Max Franz <[email protected]>
Date: 2019-03-28 (Thu, 28 Mar 2019)
Changed paths:
M src/client/components/document-seeder.js
M src/client/components/editor/index.js
M src/client/components/home.js
M src/server/routes/api/document/index.js
M src/styles/home.css
M src/styles/image/author-workflow.svg
A src/styles/image/curve-menten.svg
A src/styles/image/infographic-authors.svg
M src/views/index.html
Log Message:
-----------
Merge name into unstable
Commit: 78653fbbda644aa3751b64c42044cb50020031af
https://github.com/PathwayCommons/factoid/commit/78653fbbda644aa3751b64c42044cb50020031af
Author: Max Franz <[email protected]>
Date: 2019-03-28 (Thu, 28 Mar 2019)
Changed paths:
M src/config.js
M src/server/email-transport.js
Log Message:
-----------
Merge email into unstable
Commit: 58dfff0fda9ca8f039ea940945121e9ada613469
https://github.com/PathwayCommons/factoid/commit/58dfff0fda9ca8f039ea940945121e9ada613469
Author: Max Franz <[email protected]>
Date: 2019-03-28 (Thu, 28 Mar 2019)
Changed paths:
M public/icon.png
M public/icon.svg
M src/styles/home.css
R src/styles/image/author-workflow.svg
R src/styles/image/form-option-preview.png
R src/styles/image/hero-splash-0.png
R src/styles/image/hero-splash-1.png
R src/styles/image/hero-splash.jpg
R src/styles/image/how-it-works-detailed.png
R src/styles/image/how-it-works.png
R src/styles/image/infographic-factoid.svg
R src/styles/image/logo-full.svg
R src/styles/image/logo-no-slogan.svg
M src/styles/image/logo.svg
Log Message:
-----------
Clean up logo
Commit: aa0a7adfae7027d5fdd1ce2dbfcd6c3106618b0b
https://github.com/PathwayCommons/factoid/commit/aa0a7adfae7027d5fdd1ce2dbfcd6c3106618b0b
Author: jvwong <[email protected]>
Date: 2019-04-05 (Fri, 05 Apr 2019)
Changed paths:
A src/server/routes/api/document/filters.js
Log Message:
-----------
Stub out top interactions filter - added filters file
Commit: 9b89b941f64ebb344b6b54bc026af0e7e5f8dc4b
https://github.com/PathwayCommons/factoid/commit/9b89b941f64ebb344b6b54bc026af0e7e5f8dc4b
Author: jvwong <[email protected]>
Date: 2019-04-05 (Fri, 05 Apr 2019)
Changed paths:
M src/server/routes/api/document/filters.js
M src/server/routes/api/document/reach.js
Log Message:
-----------
Adding implementation of top interactions filter.
Commit: c0183844ec6edd1aa8c91b11c6f773f8bd6a429b
https://github.com/PathwayCommons/factoid/commit/c0183844ec6edd1aa8c91b11c6f773f8bd6a429b
Author: jvwong <[email protected]>
Date: 2019-04-05 (Fri, 05 Apr 2019)
Changed paths:
M src/server/routes/api/document/filters.js
Log Message:
-----------
Clean up function doc.
Commit: 36e155d79735e3a9d092f5a748928a7f51730dff
https://github.com/PathwayCommons/factoid/commit/36e155d79735e3a9d092f5a748928a7f51730dff
Author: jvwong <[email protected]>
Date: 2019-04-08 (Mon, 08 Apr 2019)
Changed paths:
M src/server/routes/api/document/filters.js
Log Message:
-----------
Sort when filtering.
Commit: 2a1783b4640521b443c174a285a640dd05a782a0
https://github.com/PathwayCommons/factoid/commit/2a1783b4640521b443c174a285a640dd05a782a0
Author: jvwong <[email protected]>
Date: 2019-04-08 (Mon, 08 Apr 2019)
Changed paths:
M src/server/routes/api/document/filters.js
Log Message:
-----------
resolving conflicts
Commit: bf498a1d582434b4a6595aa8d2109ff1f1b554b4
https://github.com/PathwayCommons/factoid/commit/bf498a1d582434b4a6595aa8d2109ff1f1b554b4
Author: jvwong <[email protected]>
Date: 2019-04-25 (Thu, 25 Apr 2019)
Changed paths:
M src/client/components/document-seeder-example.js
M src/client/components/document-seeder.js
M src/client/components/editor/index.js
M src/model/document/document.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Modifying field names. Disabled email send.
Commit: fa6ba657187725a263d29ea87e3705c1ef320d62
https://github.com/PathwayCommons/factoid/commit/fa6ba657187725a263d29ea87e3705c1ef320d62
Author: jvwong <[email protected]>
Date: 2019-04-26 (Fri, 26 Apr 2019)
Changed paths:
M src/client/components/editor/index.js
Log Message:
-----------
Author list formatting.
Commit: b8e99278fd087d86109d7419f7069d46689d3530
https://github.com/PathwayCommons/factoid/commit/b8e99278fd087d86109d7419f7069d46689d3530
Author: jvwong <[email protected]>
Date: 2019-04-26 (Fri, 26 Apr 2019)
Changed paths:
M src/client/components/editor/index.js
Log Message:
-----------
Only add separator when journal and authors present
Commit: c91ec1e861f98db188b6fa470621ff6e0d4c318f
https://github.com/PathwayCommons/factoid/commit/c91ec1e861f98db188b6fa470621ff6e0d4c318f
Author: jvwong <[email protected]>
Date: 2019-04-26 (Fri, 26 Apr 2019)
Changed paths:
M src/config.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Adding email enabled flag.
Commit: 84ef458589194de0475a21c2be83fe198a52e2cb
https://github.com/PathwayCommons/factoid/commit/84ef458589194de0475a21c2be83fe198a52e2cb
Author: jvwong <[email protected]>
Date: 2019-04-26 (Fri, 26 Apr 2019)
Changed paths:
M test/document.js
Log Message:
-----------
clean up test referencing 'name'
Commit: 83c2a78b64dda52d533885017bd43d79ad9274ec
https://github.com/PathwayCommons/factoid/commit/83c2a78b64dda52d533885017bd43d79ad9274ec
Author: Max Franz <[email protected]>
Date: 2019-04-30 (Tue, 30 Apr 2019)
Changed paths:
M src/client/components/document-seeder-example.js
M src/client/components/document-seeder.js
M src/client/components/editor/index.js
M src/config.js
M src/model/document/document.js
M src/server/routes/api/document/index.js
M test/document.js
Log Message:
-----------
Merge pull request #459 from jvwong/iss453_publisher-portal
Iss453 publisher portal
Commit: 324cb1cafa3ca02a94066e0f2bd362bbac115d61
https://github.com/PathwayCommons/factoid/commit/324cb1cafa3ca02a94066e0f2bd362bbac115d61
Author: jvwong <[email protected]>
Date: 2019-05-01 (Wed, 01 May 2019)
Changed paths:
M src/server/index.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Using default error handler from ExpressJS.
Commit: 65ebe98340a0da00093be94b86aad4f893292577
https://github.com/PathwayCommons/factoid/commit/65ebe98340a0da00093be94b86aad4f893292577
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
A src/server/routes/api/document/filters.js
M src/server/routes/api/document/reach.js
Log Message:
-----------
Merge pull request #450 from jvwong/iss367_filtering-interactions
Post-REACH interaction filters
Commit: 7f4cd6bef7d5b4b3ab6ff4ee24620904b48a258f
https://github.com/PathwayCommons/factoid/commit/7f4cd6bef7d5b4b3ab6ff4ee24620904b48a258f
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M public/icon.png
M public/icon.svg
M src/client/components/home.js
M src/config.js
M src/server/routes/api/document/index.js
M src/styles/image/logo.svg
M src/views/index.html
Log Message:
-----------
Roll back the name
Commit: bbb92a7327162513d2db6bd0fcf548ebbdc7f51f
https://github.com/PathwayCommons/factoid/commit/bbb92a7327162513d2db6bd0fcf548ebbdc7f51f
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
Log Message:
-----------
Disable the participant arrow ui in the interaction wizard #456
Commit: 024da97fb5f19b85bc56ed0f7870d1b32fbb2ef6
https://github.com/PathwayCommons/factoid/commit/024da97fb5f19b85bc56ed0f7870d1b32fbb2ef6
Author: jvwong <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/server/index.js
Log Message:
-----------
Put back original ExpressJS custom error handling.
Commit: 69236a0fe19003a6bb2f0828cac0d702f672e05d
https://github.com/PathwayCommons/factoid/commit/69236a0fe19003a6bb2f0828cac0d702f672e05d
Author: jvwong <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/server/index.js
Log Message:
-----------
Drop unused variable in error handler.
Commit: 412ae94c15bac95c152fdafc788c872e1b97ab9f
https://github.com/PathwayCommons/factoid/commit/412ae94c15bac95c152fdafc788c872e1b97ab9f
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/index.js
M src/client/components/home.js
M src/client/components/main-menu.js
M src/styles/app.css
M src/styles/help.css
M src/styles/index.css
M src/styles/main-menu.css
Log Message:
-----------
Also video
Commit: b28b56faf49ca831fc4bbaf697cafacb1741238e
https://github.com/PathwayCommons/factoid/commit/b28b56faf49ca831fc4bbaf697cafacb1741238e
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/client/components/main-menu.js
Log Message:
-----------
Lint
Commit: 6a4fb64881c032d5f52b7fb30da4acd1d5bf51d7
https://github.com/PathwayCommons/factoid/commit/6a4fb64881c032d5f52b7fb30da4acd1d5bf51d7
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/server/index.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Merge pull request #462 from jvwong/iss457_doc-route-errors
Document api routes: error handling.
Commit: 1c6b58f6ab2ab1cdb08a63d415c34d353f3ec1f6
https://github.com/PathwayCommons/factoid/commit/1c6b58f6ab2ab1cdb08a63d415c34d353f3ec1f6
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
Log Message:
-----------
Merge pull request #464 from PathwayCommons/intn-wiz-no-arrows
Disable the participant arrow ui in the interaction wizard #456
Commit: 6928a20cf155a83b4ba9df680d8b6d6cceda7bd8
https://github.com/PathwayCommons/factoid/commit/6928a20cf155a83b4ba9df680d8b6d6cceda7bd8
Author: Max Franz <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M public/icon.png
M public/icon.svg
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/index.js
M src/client/components/home.js
M src/client/components/main-menu.js
M src/config.js
M src/server/routes/api/document/index.js
M src/styles/app.css
M src/styles/help.css
M src/styles/image/logo.svg
M src/styles/index.css
M src/styles/main-menu.css
M src/views/index.html
Log Message:
-----------
Merge pull request #463 from PathwayCommons/name2
Roll back the name & video
Commit: 7f8dd3d945a9a2c8339427c858f09186c126057b
https://github.com/PathwayCommons/factoid/commit/7f8dd3d945a9a2c8339427c858f09186c126057b
Author: metincansiper <[email protected]>
Date: 2019-05-07 (Tue, 07 May 2019)
Changed paths:
M src/client/components/editor/index.js
M src/model/element/entity.js
Log Message:
-----------
Fixed listeners problem on undo last remove operation, also fixed #465
Commit: 5d12a5618681740253a7da2d4f792908780fb389
https://github.com/PathwayCommons/factoid/commit/5d12a5618681740253a7da2d4f792908780fb389
Author: Max Franz <[email protected]>
Date: 2019-05-08 (Wed, 08 May 2019)
Changed paths:
M src/client/components/editor/index.js
M src/model/element/entity.js
Log Message:
-----------
Merge pull request #467 from metincansiper/undo-rm-listener-fix2
Fixed listeners problem on undo last remove operation, also fixed #465
Commit: f3185b418c025da956c054db315e7644873ec167
https://github.com/PathwayCommons/factoid/commit/f3185b418c025da956c054db315e7644873ec167
Author: jvwong <[email protected]>
Date: 2019-05-08 (Wed, 08 May 2019)
Changed paths:
M src/client/components/editor/index.js
Log Message:
-----------
Updated youtube video for tour.
Commit: 4e2f46e991c11c33471df9ca839bd9fbca611f47
https://github.com/PathwayCommons/factoid/commit/4e2f46e991c11c33471df9ca839bd9fbca611f47
Author: jvwong <[email protected]>
Date: 2019-05-08 (Wed, 08 May 2019)
Changed paths:
M src/client/components/home.js
Log Message:
-----------
Polishing text and updating video.
Commit: 2ff0e1aee5565fcb22dfcd27caf15799e4d0dc23
https://github.com/PathwayCommons/factoid/commit/2ff0e1aee5565fcb22dfcd27caf15799e4d0dc23
Author: Max Franz <[email protected]>
Date: 2019-05-08 (Wed, 08 May 2019)
Changed paths:
M src/client/components/home.js
Log Message:
-----------
Merge pull request #469 from jvwong/polished-home
Polishing text and updating video.
Commit: fc24da1f5e28ea3049c6fd365c634721e1402568
https://github.com/PathwayCommons/factoid/commit/fc24da1f5e28ea3049c6fd365c634721e1402568
Author: Max Franz <[email protected]>
Date: 2019-05-08 (Wed, 08 May 2019)
Changed paths:
M src/client/components/editor/index.js
Log Message:
-----------
Merge pull request #468 from jvwong/tour-video
Updated youtube video for tour.
Commit: e11e0ffdbcf0cbd4044e594bbe26a827850ff917
https://github.com/PathwayCommons/factoid/commit/e11e0ffdbcf0cbd4044e594bbe26a827850ff917
Author: metincansiper <[email protected]>
Date: 2019-05-08 (Wed, 08 May 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
M src/model/element/interaction-type/binding.js
M src/model/element/interaction-type/interaction-type.js
M src/model/element/interaction-type/interaction.js
M src/model/element/interaction-type/modification.js
M src/model/element/interaction-type/transcription-translation.js
Log Message:
-----------
Allow any 'sign' value for Binding interaction 'type' #454
Commit: 7cdf2f244dff171222be3600dc8b795a87e0e195
https://github.com/PathwayCommons/factoid/commit/7cdf2f244dff171222be3600dc8b795a87e0e195
Author: Max Franz <[email protected]>
Date: 2019-05-09 (Thu, 09 May 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
M src/model/element/interaction-type/binding.js
M src/model/element/interaction-type/interaction-type.js
M src/model/element/interaction-type/interaction.js
M src/model/element/interaction-type/modification.js
M src/model/element/interaction-type/transcription-translation.js
Log Message:
-----------
Merge pull request #470 from metincansiper/flex-intntype-ui
Allow any 'sign' value for Binding interaction 'type'
Commit: beeb8788d95887d262cc2c5bceabbf5637e5a999
https://github.com/PathwayCommons/factoid/commit/beeb8788d95887d262cc2c5bceabbf5637e5a999
Author: Max Franz <[email protected]>
Date: 2019-05-09 (Thu, 09 May 2019)
Changed paths:
M src/client/components/editor/index.js
M src/client/components/home.js
Log Message:
-----------
Add rel=0 to youtube videos to avoid related videos list
Commit: 44eca681bf59f60dc6df92aea6d82fd5725d9d76
https://github.com/PathwayCommons/factoid/commit/44eca681bf59f60dc6df92aea6d82fd5725d9d76
Author: metincansiper <[email protected]>
Date: 2019-05-09 (Thu, 09 May 2019)
Changed paths:
M src/client/components/element-info/entity-assoc-display.js
M src/config.js
M src/server/routes/api/document/reach.js
M src/server/routes/api/element-association/aggregate.js
A src/server/routes/api/element-association/grounding-search.js
M src/server/routes/api/element-association/index.js
Log Message:
-----------
Switch between pc grounding search service and current aggregate search
implementation by an env var
Commit: 7b1cdc907f7bf7c15443cb212a0d9e3b3f4df0c0
https://github.com/PathwayCommons/factoid/commit/7b1cdc907f7bf7c15443cb212a0d9e3b3f4df0c0
Author: metincansiper <[email protected]>
Date: 2019-05-09 (Thu, 09 May 2019)
Changed paths:
M src/server/routes/api/element-association/grounding-search.js
Log Message:
-----------
Fixed lint error
Commit: 22aba47643c61756e8d7e799fb5fa789f9a59ec1
https://github.com/PathwayCommons/factoid/commit/22aba47643c61756e8d7e799fb5fa789f9a59ec1
Author: metincansiper <[email protected]>
Date: 2019-05-13 (Mon, 13 May 2019)
Changed paths:
M src/config.js
M src/server/routes/api/element-association/grounding-search.js
Log Message:
-----------
Renamed `GROUNDING_SEARCH_URL` as `GROUNDING_SEARCH_BASE_URL`
Commit: 27b87cb54eea1ccac7187ee926f762469eb9882c
https://github.com/PathwayCommons/factoid/commit/27b87cb54eea1ccac7187ee926f762469eb9882c
Author: Max Franz <[email protected]>
Date: 2019-05-13 (Mon, 13 May 2019)
Changed paths:
M src/client/components/element-info/entity-assoc-display.js
M src/config.js
M src/server/routes/api/document/reach.js
M src/server/routes/api/element-association/aggregate.js
A src/server/routes/api/element-association/grounding-search.js
M src/server/routes/api/element-association/index.js
Log Message:
-----------
Merge pull request #471 from metincansiper/switch-grounding-service
Switch between pc grounding search service and current aggregate search
implementation by using an environment variable
Commit: 9c1b4caf90680f3353816f96718327b05c45c542
https://github.com/PathwayCommons/factoid/commit/9c1b4caf90680f3353816f96718327b05c45c542
Author: metincansiper <[email protected]>
Date: 2019-05-13 (Mon, 13 May 2019)
Changed paths:
M src/client/components/element-info/entity-info.js
Log Message:
-----------
Clicking on an entity when it is on the half way of getting associated with a
gene is causing a bug #472
Commit: 187fe7af539260221dfc7a9ca8b1893cd92d55de
https://github.com/PathwayCommons/factoid/commit/187fe7af539260221dfc7a9ca8b1893cd92d55de
Author: Max Franz <[email protected]>
Date: 2019-05-14 (Tue, 14 May 2019)
Changed paths:
M src/client/components/element-info/entity-info.js
Log Message:
-----------
Merge pull request #475 from metincansiper/multiclient-grounding-bug
Clicking on an entity when it is on the half way of getting associated with a
gene is causing a bug
Commit: d99f0b6c1c58e9f63a75a3a356b103a97aa88592
https://github.com/PathwayCommons/factoid/commit/d99f0b6c1c58e9f63a75a3a356b103a97aa88592
Author: jvwong <[email protected]>
Date: 2019-05-15 (Wed, 15 May 2019)
Changed paths:
M Dockerfile
Log Message:
-----------
Update dockerfile.
Commit: 68f9cbaccdbb46695b004583e7ffdca66fcb5402
https://github.com/PathwayCommons/factoid/commit/68f9cbaccdbb46695b004583e7ffdca66fcb5402
Author: Jeffrey <[email protected]>
Date: 2019-05-16 (Thu, 16 May 2019)
Changed paths:
M Dockerfile
Log Message:
-----------
Merge pull request #476 from jvwong/iss451_docker-deployment
Update Dockerfile.
Commit: f878c4ca9ee249f6f065e4456fff6d8c72d760ff
https://github.com/PathwayCommons/factoid/commit/f878c4ca9ee249f6f065e4456fff6d8c72d760ff
Author: jvwong <[email protected]>
Date: 2019-05-16 (Thu, 16 May 2019)
Changed paths:
A docker-compose.yml
Log Message:
-----------
Added docker compose file
Commit: 0635482bf5514fda4925305a229de66c38b269e0
https://github.com/PathwayCommons/factoid/commit/0635482bf5514fda4925305a229de66c38b269e0
Author: jvwong <[email protected]>
Date: 2019-05-17 (Fri, 17 May 2019)
Changed paths:
M docker-compose.yml
Log Message:
-----------
How to use native elasticsearch
Commit: 49bb86f6ec7fa866d392dbc45dd74656e7b75137
https://github.com/PathwayCommons/factoid/commit/49bb86f6ec7fa866d392dbc45dd74656e7b75137
Author: jvwong <[email protected]>
Date: 2019-05-17 (Fri, 17 May 2019)
Changed paths:
M docker-compose.yml
Log Message:
-----------
Back to pc image for grounding-search
Commit: dd7333e4c963078d09337cca1b3b84533f35cc1e
https://github.com/PathwayCommons/factoid/commit/dd7333e4c963078d09337cca1b3b84533f35cc1e
Author: metincansiper <[email protected]>
Date: 2019-05-17 (Fri, 17 May 2019)
Changed paths:
M src/server/routes/api/element-association/grounding-search.js
Log Message:
-----------
Disable caching for pathway commons grounding search service
Commit: 03e3b11420bf98175ba538e16c0c10aa27340b01
https://github.com/PathwayCommons/factoid/commit/03e3b11420bf98175ba538e16c0c10aa27340b01
Author: metincansiper <[email protected]>
Date: 2019-05-17 (Fri, 17 May 2019)
Changed paths:
M src/server/routes/api/element-association/grounding-search.js
Log Message:
-----------
Fixed lint errors
Commit: a21bbdf23eaca69687d677970fd05a1ab23c739e
https://github.com/PathwayCommons/factoid/commit/a21bbdf23eaca69687d677970fd05a1ab23c739e
Author: Max Franz <[email protected]>
Date: 2019-05-21 (Tue, 21 May 2019)
Changed paths:
M src/server/routes/api/element-association/grounding-search.js
Log Message:
-----------
Merge pull request #480 from PathwayCommons/disable-gs-cache
Disable caching for pathway commons grounding search service
Commit: 24c5f44450c848a2439535385bbd51938482c6d2
https://github.com/PathwayCommons/factoid/commit/24c5f44450c848a2439535385bbd51938482c6d2
Author: Max Franz <[email protected]>
Date: 2019-05-21 (Tue, 21 May 2019)
Changed paths:
A docker-compose.yml
Log Message:
-----------
Merge pull request #478 from jvwong/iss451_docker-compose
Added docker compose file
Commit: 936f6028bcf340137cc6551f044f344d8b06fd6e
https://github.com/PathwayCommons/factoid/commit/936f6028bcf340137cc6551f044f344d8b06fd6e
Author: jvwong <[email protected]>
Date: 2019-05-22 (Wed, 22 May 2019)
Changed paths:
M src/server/index.js
Log Message:
-----------
Create tables in sequential order.
Commit: 1a84424db0a6d7ce7f16fe737f4ef94f030d715b
https://github.com/PathwayCommons/factoid/commit/1a84424db0a6d7ce7f16fe737f4ef94f030d715b
Author: Max Franz <[email protected]>
Date: 2019-05-23 (Thu, 23 May 2019)
Changed paths:
M src/server/index.js
Log Message:
-----------
Merge pull request #482 from jvwong/iss452_rethink-db-exists
Create tables in sequential order.
Commit: 8042eea6f3b57ce19223c11021380002f8b8717e
https://github.com/PathwayCommons/factoid/commit/8042eea6f3b57ce19223c11021380002f8b8717e
Author: Jeffrey Wong <[email protected]>
Date: 2019-05-23 (Thu, 23 May 2019)
Changed paths:
M docker-compose.yml
Log Message:
-----------
Adding named volumes for the database and indexing services.
Commit: 8c76d2b448483c725fbc7634b1a5dfc8d1f3388d
https://github.com/PathwayCommons/factoid/commit/8c76d2b448483c725fbc7634b1a5dfc8d1f3388d
Author: Jeffrey <[email protected]>
Date: 2019-05-24 (Fri, 24 May 2019)
Changed paths:
M docker-compose.yml
Log Message:
-----------
Merge pull request #483 from PathwayCommons/docker-volumes
Adding named volumes for the database and indexing services.
Commit: bd26f539fcd4f17f54ba644772dff25b9796f89f
https://github.com/PathwayCommons/factoid/commit/bd26f539fcd4f17f54ba644772dff25b9796f89f
Author: jvwong <[email protected]>
Date: 2019-06-05 (Wed, 05 Jun 2019)
Changed paths:
A .env
M docker-compose.yml
Log Message:
-----------
Adding default environment variables and .env file for docker compose
Commit: 004d5e0649514e52a96245b78e71eb3e7fe8c223
https://github.com/PathwayCommons/factoid/commit/004d5e0649514e52a96245b78e71eb3e7fe8c223
Author: jvwong <[email protected]>
Date: 2019-06-05 (Wed, 05 Jun 2019)
Changed paths:
M .env
M docker-compose.yml
Log Message:
-----------
Open up db admin. Declare default db credientials in environment file.
Commit: 733a9ba7ba7cfebe944fdec7c3e060522f0c3126
https://github.com/PathwayCommons/factoid/commit/733a9ba7ba7cfebe944fdec7c3e060522f0c3126
Author: jvwong <[email protected]>
Date: 2019-06-05 (Wed, 05 Jun 2019)
Changed paths:
M README.md
Log Message:
-----------
Update docker compose in readme.
Commit: 523a4ea1e45c0fab114703a4b01b7dd83e5390d3
https://github.com/PathwayCommons/factoid/commit/523a4ea1e45c0fab114703a4b01b7dd83e5390d3
Author: jvwong <[email protected]>
Date: 2019-06-05 (Wed, 05 Jun 2019)
Changed paths:
M .env
Log Message:
-----------
Database credentials in env should be empty by default.
Commit: bf810a82ed49a8d77b54f43d0603d6317d531462
https://github.com/PathwayCommons/factoid/commit/bf810a82ed49a8d77b54f43d0603d6317d531462
Author: Jeffrey Wong <[email protected]>
Date: 2019-06-06 (Thu, 06 Jun 2019)
Changed paths:
M README.md
M docker-compose.yml
Log Message:
-----------
More generic name for index service. README update.
Commit: 3002819ed9b394943bf9511a611a3787c60ec850
https://github.com/PathwayCommons/factoid/commit/3002819ed9b394943bf9511a611a3787c60ec850
Author: Max Franz <[email protected]>
Date: 2019-06-06 (Thu, 06 Jun 2019)
Changed paths:
M src/client/components/home.js
Log Message:
-----------
Update home.js
Commit: 90d12abb1d0bc01fb65809866715a956533d6c25
https://github.com/PathwayCommons/factoid/commit/90d12abb1d0bc01fb65809866715a956533d6c25
Author: jvwong <[email protected]>
Date: 2019-06-07 (Fri, 07 Jun 2019)
Changed paths:
R .env
R docker-compose.yml
A docker/.env
A docker/backup_restore.sh
A docker/docker-compose.yml
Log Message:
-----------
Moving folders and adding backup-restore script.
Commit: 1e6df0311e917070066d49ec59c5f94edbebd393
https://github.com/PathwayCommons/factoid/commit/1e6df0311e917070066d49ec59c5f94edbebd393
Author: jvwong <[email protected]>
Date: 2019-06-07 (Fri, 07 Jun 2019)
Changed paths:
R docker/backup_restore.sh
A docker/backup_volumes.sh
A docker/restore_volumes.sh
Log Message:
-----------
Command line arg and validation for backups
Commit: cad23d68e684d7fcb429e345ec06e98e2ff4c54d
https://github.com/PathwayCommons/factoid/commit/cad23d68e684d7fcb429e345ec06e98e2ff4c54d
Author: jvwong <[email protected]>
Date: 2019-06-07 (Fri, 07 Jun 2019)
Changed paths:
M docker/backup_volumes.sh
M docker/restore_volumes.sh
Log Message:
-----------
Backup with generic volume parameters
Commit: a81f53d4894a8dc9403349541cd1ed336297e660
https://github.com/PathwayCommons/factoid/commit/a81f53d4894a8dc9403349541cd1ed336297e660
Author: jvwong <[email protected]>
Date: 2019-06-07 (Fri, 07 Jun 2019)
Changed paths:
M docker/backup_volumes.sh
M docker/restore_volumes.sh
Log Message:
-----------
Options in dump and restore.
Commit: 20cd15717a37c1d27ee3bbd6f36fafe24c3e7719
https://github.com/PathwayCommons/factoid/commit/20cd15717a37c1d27ee3bbd6f36fafe24c3e7719
Author: jvwong <[email protected]>
Date: 2019-06-07 (Fri, 07 Jun 2019)
Changed paths:
M docker/backup_volumes.sh
M docker/restore_volumes.sh
Log Message:
-----------
Updating docs for backup and restore.
Commit: 08ca71e0ed010e7da708a3765ddc88929e60b565
https://github.com/PathwayCommons/factoid/commit/08ca71e0ed010e7da708a3765ddc88929e60b565
Author: jvwong <[email protected]>
Date: 2019-06-07 (Fri, 07 Jun 2019)
Changed paths:
M README.md
M docker/backup_volumes.sh
M docker/restore_volumes.sh
Log Message:
-----------
Documenting backup and restore in README
Commit: 09a78c667784a5b4dab492af3fc8cec4f232ae09
https://github.com/PathwayCommons/factoid/commit/09a78c667784a5b4dab492af3fc8cec4f232ae09
Author: Max Franz <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
M ci.sh
Log Message:
-----------
Update ci.sh from server
Optional command and 'clean' & 'build" bailouts
Commit: c8bf6a9bea504e37aa3f20f35cf2cb923c9ae9a6
https://github.com/PathwayCommons/factoid/commit/c8bf6a9bea504e37aa3f20f35cf2cb923c9ae9a6
Author: Max Franz <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
M src/server/routes/api/element-association/grounding-search.js
Log Message:
-----------
Filter out zero organism counts for grounding search
Ref : Nondeterministic organism ordering when counts are zero #497
Commit: 28168de10a0af8dc3e27eb49e69e80bf177a20bf
https://github.com/PathwayCommons/factoid/commit/28168de10a0af8dc3e27eb49e69e80bf177a20bf
Author: Max Franz <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
M README.md
M src/client/components/document-seeder.js
M src/config.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Use API_KEY to restrict new document creation #498
Commit: fbb59e7be44af8073a243b023d95654f4baef46a
https://github.com/PathwayCommons/factoid/commit/fbb59e7be44af8073a243b023d95654f4baef46a
Author: Max Franz <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
M src/client/components/element-info/interaction-info.js
Log Message:
-----------
Interaction: 'Edit from the beginning' button does nothing #474
Commit: 443a26e66b5e088ae10585641c64a02cbd2ca2fd
https://github.com/PathwayCommons/factoid/commit/443a26e66b5e088ae10585641c64a02cbd2ca2fd
Author: Max Franz <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
M src/client/components/highlighter.js
Log Message:
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Entity name with plus '+' character terminates grounding wizard #491
Commit: d8a88e406843d05f9b792f75d3c9cf28b0257e6a
https://github.com/PathwayCommons/factoid/commit/d8a88e406843d05f9b792f75d3c9cf28b0257e6a
Author: Max Franz <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
M src/model/organism.js
Log Message:
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https://github.com/PathwayCommons/factoid/issues/496
Commit: 11f83ded20706c5010bef5fde4f1aaa65f1a40cd
https://github.com/PathwayCommons/factoid/commit/11f83ded20706c5010bef5fde4f1aaa65f1a40cd
Author: Max Franz <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
M src/config.js
Log Message:
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Use grounding.baderlab.org as the default address of the grounding service
and make the grounding service used by default.
Ref : Use grounding.baderlab.org for the default GROUNDING_SEARCH_BASE_URL #500
Commit: bac545243ed67b5564364ef70c5e367630cee8a6
https://github.com/PathwayCommons/factoid/commit/bac545243ed67b5564364ef70c5e367630cee8a6
Author: Max Franz <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
M README.md
R docker-compose.yml
A docker/.env
A docker/backup_volumes.sh
A docker/docker-compose.yml
A docker/restore_volumes.sh
Log Message:
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Merge pull request #494 from PathwayCommons/iss493_compose-vars
Updates to docker-compose and documentation
Commit: 2090ebe4bcf9e8e222eddf38a2477d1bb1965487
https://github.com/PathwayCommons/factoid/commit/2090ebe4bcf9e8e222eddf38a2477d1bb1965487
Author: Max Franz <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
Log Message:
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Merge master and unstable together for 0.5
Commit: 0eb5a30da7d2d83cea1094919f439343c6437625
https://github.com/PathwayCommons/factoid/commit/0eb5a30da7d2d83cea1094919f439343c6437625
Author: Max Franz <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
M package-lock.json
M package.json
Log Message:
-----------
0.5.0
Commit: 2b0f95904bdfc6b7db4566895e8334920620afcd
https://github.com/PathwayCommons/factoid/commit/2b0f95904bdfc6b7db4566895e8334920620afcd
Author: Jeffrey <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
M Dockerfile
M README.md
M ci.sh
A docker/.env
A docker/backup_volumes.sh
A docker/docker-compose.yml
A docker/restore_volumes.sh
M package-lock.json
M package.json
M public/icon.svg
R src/client/components/debug-document-seeder.js
R src/client/components/debug.js
R src/client/components/demo-input.js
R src/client/components/document-renamer.js
M src/client/components/document-seeder-example.js
M src/client/components/document-seeder.js
R src/client/components/document-wizard-stepper.js
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/index.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
R src/client/components/example-document.js
M src/client/components/highlighter.js
M src/client/components/home.js
R src/client/components/interval-highlighter.js
M src/client/components/main-menu.js
R src/client/components/my-factoids.js
R src/client/components/organism-toggle.js
R src/client/components/reach-interval-highlighter.js
M src/client/components/tasks.js
M src/client/router.js
M src/config.js
M src/model/document/document.js
M src/model/element/entity.js
M src/model/element/interaction-type/binding.js
M src/model/element/interaction-type/interaction-type.js
M src/model/element/interaction-type/interaction.js
M src/model/element/interaction-type/modification.js
M src/model/element/interaction-type/transcription-translation.js
M src/model/organism.js
M src/server/email-transport.js
M src/server/index.js
A src/server/routes/api/document/filters.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/reach.js
M src/server/routes/api/element-association/aggregate.js
A src/server/routes/api/element-association/grounding-search.js
M src/server/routes/api/element-association/index.js
M src/styles/app.css
R src/styles/debug-document-seeder.css
R src/styles/debug.css
R src/styles/demo-input.css
R src/styles/document-view-chooser.css
R src/styles/document-wizard-stepper.css
M src/styles/editor/editor.css
R src/styles/example-document.css
M src/styles/help.css
M src/styles/home.css
R src/styles/image/author-workflow.svg
A src/styles/image/curve-menten.svg
R src/styles/image/form-option-preview.png
R src/styles/image/hero-splash-0.png
R src/styles/image/hero-splash-1.png
R src/styles/image/hero-splash.jpg
R src/styles/image/how-it-works-detailed.png
R src/styles/image/how-it-works.png
A src/styles/image/infographic-authors.svg
R src/styles/image/infographic-factoid.svg
R src/styles/image/logo-full.svg
R src/styles/image/logo-no-slogan.svg
M src/styles/image/logo.svg
M src/styles/index.css
M src/styles/main-menu.css
R src/styles/my-factoids.css
R src/styles/organism-toggle.css
M src/styles/popover/tippy.css
R src/styles/reach-interval-highlighter.css
M src/views/index.html
M test/document.js
M test/syncher.js
Log Message:
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Merge pull request #501 from PathwayCommons/0.5.0-release
0.5.0 release
Compare:
https://github.com/PathwayCommons/factoid/compare/a6022584cae1...2b0f95904bdf
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