Branch: refs/heads/unstable
Home: https://github.com/PathwayCommons/factoid
Commit: 638e8999f4dba7d459ee7ca11e9f3e7dc5ccd0a5
https://github.com/PathwayCommons/factoid/commit/638e8999f4dba7d459ee7ca11e9f3e7dc5ccd0a5
Author: metincansiper <[email protected]>
Date: 2019-04-26 (Fri, 26 Apr 2019)
Changed paths:
M package-lock.json
M package.json
A src/client/components/editor/cy/compound-dnd.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/index.js
M src/model/document/document.js
A src/model/element/complex.js
M src/model/element/element-type.js
M src/model/element/element.js
M src/model/element/entity-type.js
M src/model/element/entity.js
M src/model/element/factory.js
M src/util/cy.js
Log Message:
-----------
Added complex support
Commit: 0a5bd42e00bb5d837af0011b4f959f7579b7f1de
https://github.com/PathwayCommons/factoid/commit/0a5bd42e00bb5d837af0011b4f959f7579b7f1de
Author: metincansiper <[email protected]>
Date: 2019-04-26 (Fri, 26 Apr 2019)
Changed paths:
M src/client/components/editor/index.js
Log Message:
-----------
Revert changes in remove() of editor/index.js
Commit: 337ccb133991a96fab60b57e8d021df2e827a620
https://github.com/PathwayCommons/factoid/commit/337ccb133991a96fab60b57e8d021df2e827a620
Author: metincansiper <[email protected]>
Date: 2019-04-26 (Fri, 26 Apr 2019)
Changed paths:
M src/client/components/editor/cy/stylesheet.js
Log Message:
-----------
Fixed a typo in specifying compound nodes background color
Commit: b0751ad52a061349ef445c021f82ef05caaf70b5
https://github.com/PathwayCommons/factoid/commit/b0751ad52a061349ef445c021f82ef05caaf70b5
Author: metincansiper <[email protected]>
Date: 2019-05-01 (Wed, 01 May 2019)
Changed paths:
M package-lock.json
M package.json
A src/client/components/editor/cy/compound-dnd.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/index.js
M src/model/document/document.js
A src/model/element/complex.js
M src/model/element/element-type.js
M src/model/element/element.js
M src/model/element/entity-type.js
M src/model/element/entity.js
M src/model/element/factory.js
M src/util/cy.js
Log Message:
-----------
Merge pull request #458 from metincansiper/complex-support
Added complex support
Commit: 3709de595fd94148408c906e341a38a5b1c65449
https://github.com/PathwayCommons/factoid/commit/3709de595fd94148408c906e341a38a5b1c65449
Author: metincansiper <[email protected]>
Date: 2019-05-15 (Wed, 15 May 2019)
Changed paths:
M public/icon.png
M public/icon.svg
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/index.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/home.js
M src/client/components/main-menu.js
M src/config.js
M src/model/element/complex.js
M src/model/element/entity.js
M src/model/element/interaction-type/binding.js
M src/model/element/interaction-type/interaction-type.js
M src/model/element/interaction-type/interaction.js
M src/model/element/interaction-type/modification.js
M src/model/element/interaction-type/transcription-translation.js
M src/server/index.js
A src/server/routes/api/document/filters.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/reach.js
M src/server/routes/api/element-association/aggregate.js
A src/server/routes/api/element-association/grounding-search.js
M src/server/routes/api/element-association/index.js
M src/styles/app.css
M src/styles/help.css
M src/styles/image/logo.svg
M src/styles/index.css
M src/styles/main-menu.css
M src/views/index.html
Log Message:
-----------
Merge branch 'unstable' into complex-support
Commit: b95a6b0bf419cf77d761997d681958164c8dacf1
https://github.com/PathwayCommons/factoid/commit/b95a6b0bf419cf77d761997d681958164c8dacf1
Author: metincansiper <[email protected]>
Date: 2019-05-15 (Wed, 15 May 2019)
Changed paths:
M src/client/components/editor/index.js
Log Message:
-----------
Fixed linting errors
Commit: e598edc35e9a93a2ef8bb7544e0180c7c6244052
https://github.com/PathwayCommons/factoid/commit/e598edc35e9a93a2ef8bb7544e0180c7c6244052
Author: metincansiper <[email protected]>
Date: 2019-05-17 (Fri, 17 May 2019)
Changed paths:
M package.json
M src/client/client-util/file.js
M src/client/client-util/index.js
M src/client/components/animate.js
M src/client/components/copy-field.js
M src/client/components/data-component.js
M src/client/components/dirty-component.js
M src/client/components/document-linkout.js
M src/client/components/document-seeder-example.js
M src/client/components/document-seeder.js
M src/client/components/editor/buttons.js
M src/client/components/editor/cy/automove.js
M src/client/components/editor/cy/compound-dnd.js
M src/client/components/editor/cy/cxtmenu.js
M src/client/components/editor/cy/defs.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/edgehandles.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/layout.js
M src/client/components/editor/cy/on-key.js
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/cy/tippy.js
M src/client/components/editor/cy/viewport.js
M src/client/components/editor/defs.js
M src/client/components/editor/help.js
M src/client/components/editor/index.js
M src/client/components/editor/undo-remove.js
M src/client/components/element-info/chemical-formula.js
M src/client/components/element-info/element-info.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/element-info/participant-info.js
M src/client/components/element-info/progression-stepper.js
M src/client/components/element-info/progression.js
M src/client/components/form-editor/entity-form.js
M src/client/components/form-editor/index.js
M src/client/components/form-editor/interaction-form.js
M src/client/components/highlighter.js
M src/client/components/home.js
M src/client/components/main-menu.js
M src/client/components/notification/base.js
M src/client/components/notification/corner.js
M src/client/components/notification/index.js
M src/client/components/notification/inline.js
M src/client/components/notification/list.js
M src/client/components/notification/notification.js
M src/client/components/notification/panel.js
M src/client/components/notification/popover.js
M src/client/components/page-not-found.js
M src/client/components/popover/popover.js
M src/client/components/popover/tooltip.js
M src/client/components/tasks.js
M src/client/components/toggle.js
M src/client/debug.js
M src/client/defs.js
M src/client/index.js
M src/client/logger.js
M src/client/polyfills.js
M src/client/router.js
M src/model/document/document.js
M src/model/document/index.js
M src/model/element/complex.js
M src/model/element/element-type.js
M src/model/element/element.js
M src/model/element/entity-type.js
M src/model/element/entity.js
M src/model/element/interaction-type/binding.js
M src/model/element/interaction-type/biopax-type.js
M src/model/element/interaction-type/demethylation.js
M src/model/element/interaction-type/dephosphorylation.js
M src/model/element/interaction-type/deubiquitination.js
M src/model/element/interaction-type/enum.js
M src/model/element/interaction-type/index.js
M src/model/element/interaction-type/interaction-type.js
M src/model/element/interaction-type/interaction.js
M src/model/element/interaction-type/methylation.js
M src/model/element/interaction-type/modification.js
M src/model/element/interaction-type/phosphorylation.js
M src/model/element/interaction-type/transcription-translation.js
M src/model/element/interaction-type/ubiquitination.js
Log Message:
-----------
Working on using es import/export instead of require(). Not completed yet.
Commit: fb2667e2b3cfee0a7ad686c7a4a349ee39c34517
https://github.com/PathwayCommons/factoid/commit/fb2667e2b3cfee0a7ad686c7a4a349ee39c34517
Author: metincansiper <[email protected]>
Date: 2019-06-19 (Wed, 19 Jun 2019)
Changed paths:
M .eslintrc.json
M package-lock.json
M package.json
M src/client/components/editor/cy/automove.js
M src/client/components/editor/cy/compound-dnd.js
M src/client/components/editor/cy/cxtmenu.js
M src/client/components/editor/cy/defs.js
M src/client/components/editor/cy/edgehandles.js
M src/client/components/editor/cy/layout.js
M src/client/components/editor/cy/tippy.js
M src/client/components/editor/cy/viewport.js
M src/client/components/editor/undo-remove.js
M src/client/components/highlighter.js
M src/client/components/notification/index.js
M src/config.js
M src/model/document/index.js
M src/model/element-cache.js
M src/model/element-set.js
M src/model/element/factory.js
M src/model/element/index.js
M src/model/element/interaction-type/enum.js
M src/model/element/interaction-type/transcription-translation.js
M src/model/element/interaction.js
M src/model/element/participant-type.js
M src/model/empty-element-cache.js
M src/model/event-emitter-mixin.js
M src/model/organism.js
M src/model/syncher.js
M src/server/db.js
M src/server/email-transport.js
M src/server/index.js
M src/server/logger.js
M src/server/routes/api/document/filters.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/null.js
M src/server/routes/api/document/reach.js
M src/server/routes/api/element-association/aggregate.js
M src/server/routes/api/element-association/chebi.js
M src/server/routes/api/element-association/grounding-search.js
M src/server/routes/api/element-association/index.js
M src/server/routes/api/element-association/pc.js
M src/server/routes/api/element-association/pubchem.js
M src/server/routes/api/element-association/search-string-conversion.js
M src/server/routes/api/element-association/uniprot.js
M src/server/routes/api/index.js
M src/server/routes/index.js
M src/server/routes/socket.io.js
M src/server/routes/style-demo.js
M src/util/assert.js
M src/util/cache.js
M src/util/cy.js
M src/util/dom.js
M src/util/index.js
M src/util/is.js
M src/util/memoize.js
M src/util/obj.js
M src/util/promise.js
M src/util/strings.js
M test/document.js
M test/element.js
M test/entity.js
M test/interaction.js
M test/mock/cache.js
M test/mock/socket.js
M test/syncher.js
M test/util/conf.js
M test/util/socket-io.js
M test/util/table.js
M test/util/when.js
Log Message:
-----------
Completed changes for using es import/export instead of require() but not
well tested yet.
Commit: c5c1e6f4fc7bbc587c41217dda87c838027443ba
https://github.com/PathwayCommons/factoid/commit/c5c1e6f4fc7bbc587c41217dda87c838027443ba
Author: metincansiper <[email protected]>
Date: 2019-06-20 (Thu, 20 Jun 2019)
Changed paths:
M package-lock.json
M package.json
M src/client/components/editor/defs.js
M src/client/components/editor/index.js
M src/client/components/notification/index.js
M src/config.js
M src/model/element/index.js
M src/server/index.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/reach.js
M src/server/routes/api/element-association/aggregate.js
M src/server/routes/api/element-association/index.js
M src/server/routes/api/index.js
M src/util/assert.js
M src/util/index.js
Log Message:
-----------
Working on replacing require() by esm import/export
Commit: 28ed9dd2b198244fb59a494d05ce8a440290f572
https://github.com/PathwayCommons/factoid/commit/28ed9dd2b198244fb59a494d05ce8a440290f572
Author: metincansiper <[email protected]>
Date: 2019-06-21 (Fri, 21 Jun 2019)
Changed paths:
M package.json
Log Message:
-----------
Updated start script and removed stop script
Commit: d8daa429e06b055066a6aa4209505767909bbc03
https://github.com/PathwayCommons/factoid/commit/d8daa429e06b055066a6aa4209505767909bbc03
Author: metincansiper <[email protected]>
Date: 2019-06-21 (Fri, 21 Jun 2019)
Changed paths:
M src/client/defs.js
Log Message:
-----------
Bug fix for es import/export
Commit: eae3cc90947f44fc13f44fd1ce84ad705355388b
https://github.com/PathwayCommons/factoid/commit/eae3cc90947f44fc13f44fd1ce84ad705355388b
Author: Max Franz <[email protected]>
Date: 2019-06-25 (Tue, 25 Jun 2019)
Changed paths:
M .eslintrc.json
M package-lock.json
M package.json
M src/client/client-util/file.js
M src/client/client-util/index.js
M src/client/components/animate.js
M src/client/components/copy-field.js
M src/client/components/data-component.js
M src/client/components/dirty-component.js
M src/client/components/document-linkout.js
M src/client/components/document-seeder-example.js
M src/client/components/document-seeder.js
M src/client/components/editor/buttons.js
M src/client/components/editor/cy/automove.js
A src/client/components/editor/cy/compound-dnd.js
M src/client/components/editor/cy/cxtmenu.js
M src/client/components/editor/cy/defs.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/edgehandles.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/layout.js
M src/client/components/editor/cy/on-key.js
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/cy/tippy.js
M src/client/components/editor/cy/viewport.js
M src/client/components/editor/defs.js
M src/client/components/editor/help.js
M src/client/components/editor/index.js
M src/client/components/editor/undo-remove.js
M src/client/components/element-info/chemical-formula.js
M src/client/components/element-info/element-info.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/element-info/participant-info.js
M src/client/components/element-info/progression-stepper.js
M src/client/components/element-info/progression.js
M src/client/components/form-editor/entity-form.js
M src/client/components/form-editor/index.js
M src/client/components/form-editor/interaction-form.js
M src/client/components/highlighter.js
M src/client/components/home.js
M src/client/components/main-menu.js
M src/client/components/notification/base.js
M src/client/components/notification/corner.js
M src/client/components/notification/index.js
M src/client/components/notification/inline.js
M src/client/components/notification/list.js
M src/client/components/notification/notification.js
M src/client/components/notification/panel.js
M src/client/components/notification/popover.js
M src/client/components/page-not-found.js
M src/client/components/popover/popover.js
M src/client/components/popover/tooltip.js
M src/client/components/tasks.js
M src/client/components/toggle.js
M src/client/debug.js
M src/client/defs.js
M src/client/index.js
M src/client/logger.js
M src/client/polyfills.js
M src/client/router.js
M src/config.js
M src/model/document/document.js
M src/model/document/index.js
M src/model/element-cache.js
M src/model/element-set.js
A src/model/element/complex.js
M src/model/element/element-type.js
M src/model/element/element.js
M src/model/element/entity-type.js
M src/model/element/entity.js
M src/model/element/factory.js
M src/model/element/index.js
M src/model/element/interaction-type/binding.js
M src/model/element/interaction-type/biopax-type.js
M src/model/element/interaction-type/demethylation.js
M src/model/element/interaction-type/dephosphorylation.js
M src/model/element/interaction-type/deubiquitination.js
M src/model/element/interaction-type/enum.js
M src/model/element/interaction-type/index.js
M src/model/element/interaction-type/interaction-type.js
M src/model/element/interaction-type/interaction.js
M src/model/element/interaction-type/methylation.js
M src/model/element/interaction-type/modification.js
M src/model/element/interaction-type/phosphorylation.js
M src/model/element/interaction-type/transcription-translation.js
M src/model/element/interaction-type/ubiquitination.js
M src/model/element/interaction.js
M src/model/element/participant-type.js
M src/model/empty-element-cache.js
M src/model/event-emitter-mixin.js
M src/model/organism.js
M src/model/syncher.js
M src/server/db.js
M src/server/email-transport.js
M src/server/index.js
M src/server/logger.js
M src/server/routes/api/document/filters.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/null.js
M src/server/routes/api/document/reach.js
M src/server/routes/api/element-association/aggregate.js
M src/server/routes/api/element-association/chebi.js
M src/server/routes/api/element-association/grounding-search.js
M src/server/routes/api/element-association/index.js
M src/server/routes/api/element-association/pc.js
M src/server/routes/api/element-association/pubchem.js
M src/server/routes/api/element-association/search-string-conversion.js
M src/server/routes/api/element-association/uniprot.js
M src/server/routes/api/index.js
M src/server/routes/index.js
M src/server/routes/socket.io.js
M src/server/routes/style-demo.js
M src/util/assert.js
M src/util/cache.js
M src/util/cy.js
M src/util/dom.js
M src/util/index.js
M src/util/is.js
M src/util/memoize.js
M src/util/obj.js
M src/util/promise.js
M src/util/strings.js
M test/document.js
M test/element.js
M test/entity.js
M test/interaction.js
M test/mock/cache.js
M test/mock/socket.js
M test/syncher.js
M test/util/conf.js
M test/util/socket-io.js
M test/util/table.js
M test/util/when.js
Log Message:
-----------
Merge complex-support into complex-merge
Commit: 3b7aec00ac49ee7935aaed94488629e05d6a3595
https://github.com/PathwayCommons/factoid/commit/3b7aec00ac49ee7935aaed94488629e05d6a3595
Author: Max Franz <[email protected]>
Date: 2019-06-25 (Tue, 25 Jun 2019)
Changed paths:
M src/client/components/element-info/entity-assoc-display.js
Log Message:
-----------
Fix assocDisp null error re. import/export
Commit: c9152bfb7abe8591b0e102002e70b733d82fb8d8
https://github.com/PathwayCommons/factoid/commit/c9152bfb7abe8591b0e102002e70b733d82fb8d8
Author: Max Franz <[email protected]>
Date: 2019-06-25 (Tue, 25 Jun 2019)
Changed paths:
M package-lock.json
M package.json
Log Message:
-----------
Update to [email protected]
Compare:
https://github.com/PathwayCommons/factoid/compare/7803aae2b99b...c9152bfb7abe
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