Branch: refs/heads/java11
Home: https://github.com/cytoscape/cytoscape-impl
Commit: 420199fa358938f77a1d68c36a063642ff0886e8
https://github.com/cytoscape/cytoscape-impl/commit/420199fa358938f77a1d68c36a063642ff0886e8
Author: D <[email protected]>
Date: 2019-03-26 (Tue, 26 Mar 2019)
Changed paths:
M table-import-impl/pom.xml
M
table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/ImportTablePanel.java
Log Message:
-----------
Add jaxb imports for table import, fix cast errors
Commit: 5079d380e76baf9fd63d6805b4e94082729678d8
https://github.com/cytoscape/cytoscape-impl/commit/5079d380e76baf9fd63d6805b4e94082729678d8
Author: D <[email protected]>
Date: 2019-05-22 (Wed, 22 May 2019)
Changed paths:
M
core-task-impl/src/main/java/org/cytoscape/task/internal/layout/ApplyPreferredLayoutTask.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/FilterIO.java
M
filter2-impl/src/main/java/org/cytoscape/filter/internal/view/AbstractPanel.java
M
filter2-impl/src/main/java/org/cytoscape/filter/internal/view/AbstractPanelController.java
M
filter2-impl/src/main/java/org/cytoscape/filter/internal/view/DynamicComboBoxModel.java
M
filter2-impl/src/main/java/org/cytoscape/filter/internal/view/FilterPanelController.java
M
filter2-impl/src/main/java/org/cytoscape/filter/internal/view/TransformerPanelController.java
M
graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/nnf/NNFNetworkReader.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/sif/SIFNetworkReader.java
M
layout-impl/src/main/java/org/cytoscape/view/layout/internal/CyLayoutAlgorithmManagerImpl.java
M search-impl/src/main/java/org/cytoscape/search/internal/CyActivator.java
M
search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearch.java
M
search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchIndex.java
M
search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchManager.java
M
search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchPlugin.java
M
search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchQuery.java
M
search-impl/src/main/java/org/cytoscape/search/internal/IndexAndSearchTask.java
M search-impl/src/main/java/org/cytoscape/search/internal/ReindexTask.java
A search-impl/src/main/java/org/cytoscape/search/internal/SearchResults.java
M
search-impl/src/main/java/org/cytoscape/search/internal/ui/EnhancedSearchPanel.java
M
search-impl/src/main/java/org/cytoscape/search/internal/util/AttributeFields.java
A
search-impl/src/main/java/org/cytoscape/search/internal/util/CaseInsensitiveWhitespaceAnalyzer.java
M
search-impl/src/main/java/org/cytoscape/search/internal/util/CustomMultiFieldQueryParser.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsDialog.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsManager.java
M
swing-util-impl/src/main/java/org/cytoscape/util/swing/internal/ColorPaletteProviderPanel.java
M
swing-util-impl/src/main/java/org/cytoscape/util/swing/internal/CyColorPaletteChooserImpl.java
M
table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/CombineNetworkReaderAndMappingTask.java
M
table-import-impl/src/main/java/org/cytoscape/tableimport/internal/task/LoadNetworkReaderTask.java
M
util-impl/src/main/java/org/cytoscape/util/internal/color/AbstractDivergingPalette.java
M
util-impl/src/main/java/org/cytoscape/util/internal/color/AbstractPalette.java
M
util-impl/src/main/java/org/cytoscape/util/internal/color/BuiltinDivergentPaletteProvider.java
M
util-impl/src/main/java/org/cytoscape/util/internal/color/ColorBrewerPaletteProvider.java
M
util-impl/src/main/java/org/cytoscape/util/internal/color/PaletteProviderManagerImpl.java
M
util-impl/src/main/java/org/cytoscape/util/internal/color/RainbowOSCPaletteProvider.java
M
util-impl/src/main/java/org/cytoscape/util/internal/color/RainbowPaletteProvider.java
M
util-impl/src/main/java/org/cytoscape/util/internal/color/RandomPaletteProvider.java
M
util-impl/src/main/java/org/cytoscape/util/internal/color/ViridisPaletteProvider.java
Log Message:
-----------
Merge branch 'develop' into java11
Commit: 25a459b9468682247c40995c4fff4f3b94d11004
https://github.com/cytoscape/cytoscape-impl/commit/25a459b9468682247c40995c4fff4f3b94d11004
Author: D <[email protected]>
Date: 2019-05-23 (Thu, 23 May 2019)
Changed paths:
M io-impl/impl/pom.xml
Log Message:
-----------
Update jaxb plugin
Commit: 925f5af192638854ce46b8687a110ae4f9414c9b
https://github.com/cytoscape/cytoscape-impl/commit/925f5af192638854ce46b8687a110ae4f9414c9b
Author: D <[email protected]>
Date: 2019-05-23 (Thu, 23 May 2019)
Changed paths:
M swing-application-impl/pom.xml
Log Message:
-----------
Update jaxb plugin
Commit: 8a8cccf5c5590f05d05ee5539a202dafe769c7f7
https://github.com/cytoscape/cytoscape-impl/commit/8a8cccf5c5590f05d05ee5539a202dafe769c7f7
Author: D <[email protected]>
Date: 2019-05-23 (Thu, 23 May 2019)
Changed paths:
M app-impl/pom.xml
M application-impl/pom.xml
M command-executor-impl/pom.xml
M core-task-impl/pom.xml
M
core-task-impl/src/test/java/org/cytoscape/task/internal/io/ViewWriterTest.java
M datasource-impl/pom.xml
M ding-impl/ding-presentation-impl/pom.xml
M ding-impl/performance-debug/pom.xml
M editor-impl/pom.xml
M equations-functions-impl/pom.xml
M equations-impl/pom.xml
M filter-impl/pom.xml
M filter2-impl/pom.xml
M graphml-impl/pom.xml
M group-impl/pom.xml
M
io-impl/impl/src/test/java/org/cytoscape/io/internal/write/xgmml/AbstractXGMMLWriterTest.java
M io-impl/performance/pom.xml
M io-impl/pom.xml
M jobs-impl/pom.xml
M layout-impl/pom.xml
M model-impl/pom.xml
M pom.xml
M presentation-impl/pom.xml
M scripting-impl/pom.xml
M session-impl/pom.xml
M swing-application-impl/pom.xml
M swing-util-impl/pom.xml
M table-browser-impl/pom.xml
M table-import-impl/pom.xml
M viewmodel-impl/pom.xml
M vizmap-impl/pom.xml
M webservice-impl/pom.xml
Log Message:
-----------
Update mockito-all to mockito-core
Commit: 435e36873772cb00fd844be1b76460bd4b5ddf90
https://github.com/cytoscape/cytoscape-impl/commit/435e36873772cb00fd844be1b76460bd4b5ddf90
Author: D <[email protected]>
Date: 2019-05-23 (Thu, 23 May 2019)
Changed paths:
M table-import-impl/pom.xml
Log Message:
-----------
Update javax.activation to com.sun.activation
Commit: 1f2ddaa0716f925a5f9a7bb4bf891aeb4daf80da
https://github.com/cytoscape/cytoscape-impl/commit/1f2ddaa0716f925a5f9a7bb4bf891aeb4daf80da
Author: D <[email protected]>
Date: 2019-05-23 (Thu, 23 May 2019)
Changed paths:
M ding-impl/performance-debug/pom.xml
M io-impl/performance/pom.xml
M model-impl/performance-debug/pom.xml
M model-impl/table-performance-debug/pom.xml
Log Message:
-----------
Update goal from attached to single
Commit: 7d3692132116efb09c8fb167a00383dce87bd0a4
https://github.com/cytoscape/cytoscape-impl/commit/7d3692132116efb09c8fb167a00383dce87bd0a4
Author: D <[email protected]>
Date: 2019-06-03 (Mon, 03 Jun 2019)
Changed paths:
M core-task-impl/src/main/java/org/cytoscape/task/internal/CyActivator.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/view/CreateNetworkViewTask.java
M ding-impl/ding-presentation-impl/pom.xml
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/BendSelectedEdgesAction.java.hold
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/CyActivator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/DVisualLexicon.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/EdgeView.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/GraphView.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/GraphViewChangeEvent.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/GraphViewChangeListener.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/GraphViewFactory.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/GraphViewObject.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/NodeView.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/SelectionModeAction.java.hold
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ShowGraphicsDetailsAction.java.hold
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ShowGraphicsDetailsTask.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ShowGraphicsDetailsTaskFactory.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/StraightenSelectedEdgesAction.java.hold
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ViewChangeEdit.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/action/GraphicsDetailAction.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/customgraphicsmgr/internal/CustomGraphicsManagerImpl.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/AbstractDViewModel.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/AddEdgeBeginTask.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/AddEdgeNodeViewTaskFactoryImpl.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/AddEdgeStateMonitor.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/AddEdgeTask.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/ArbitraryGraphicsCanvas.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/BendStore.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/BirdsEyeView.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/ContentChangeListenerChain.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/CurrentDGVManager.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DEdgeDetails.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DEdgeView.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DGraphView.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DNodeDetails.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DNodeView.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingCanvas.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingLock.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingNavigationRenderingEngineFactory.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingNetworkViewFactory.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingRenderer.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingRenderingEngineFactory.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingThumbnailRenderingEngineFactory.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingViewModelFactory.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DingVisualStyleRenderingEngineFactory.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/EdgeViewDefaultSupport.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/HandleImpl.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InnerCanvas.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InnerCanvasEvent.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InnerCanvasListener.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InternalFrameComponent.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/NVLTFActionSupport.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/NodeViewDefaultSupport.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/PopupMenuHelper.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/ThumbnailView.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/ViewState.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/ViewTaskFactoryListener.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/ViewportChangeListener.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/AnnotationManagerImpl.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/CyAnnotator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/AbstractAnnotation.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/AnnotationSelection.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/ArrowAnnotationImpl.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/BoundedTextAnnotationImpl.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/GroupAnnotationImpl.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/ImageAnnotationImpl.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/ShapeAnnotationImpl.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/annotations/TextAnnotationImpl.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/AbstractDingAnnotationFactory.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/ArrowAnnotationFactory.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/BoundedTextAnnotationFactory.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/GroupAnnotationFactory.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/ImageAnnotationFactory.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/ShapeAnnotationFactory.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/create/TextAnnotationFactory.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ArrowAnnotationDialog.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/BoundedTextAnnotationDialog.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ImageAnnotationDialog.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/LoadImageDialog.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/PreviewPanel.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ShapeAnnotationDialog.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/TextAnnotationDialog.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/listeners/CanvasKeyListener.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/listeners/CanvasMouseListener.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/listeners/CanvasMouseMotionListener.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/listeners/CanvasMouseWheelListener.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/AddAnnotationTask.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/AddAnnotationTaskFactory.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/AddArrowTask.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/AddArrowTaskFactory.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/EditAnnotationTask.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/EditAnnotationTaskFactory.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/GroupAnnotationsTask.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/GroupAnnotationsTaskFactory.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/RemoveAnnotationTask.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/RemoveAnnotationTaskFactory.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/RemoveAnnotationsTask.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/ReorderAnnotationsTask.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/ReorderSelectedAnnotationsTaskFactory.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/UngroupAnnotationsTask.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/UngroupAnnotationsTaskFactory.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/ui/AnnotationMainPanel.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/ui/AnnotationMediator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/ViewUtils.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/EdgeBendValueEditor.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/events/GraphViewChangeEventAdapter.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/events/GraphViewEdgesHiddenEvent.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/events/GraphViewEdgesRestoredEvent.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/events/GraphViewEdgesSelectedEvent.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/events/GraphViewEdgesUnselectedEvent.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/events/GraphViewNodesHiddenEvent.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/events/GraphViewNodesRestoredEvent.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/events/GraphViewNodesSelectedEvent.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/events/GraphViewNodesUnselectedEvent.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/events/ViewportChangeListener.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/events/ViewportChangeListenerChain.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/AnimatedDashDotStroke.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/AnimatedEqualDashStroke.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/AnimatedLongDashStroke.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/strokes/DAnimatedStroke.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/CoalesceTimer.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/CompositeCyEdit.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/OrderedMouseAdapter.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/ViewUtil.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/EdgeAnchors.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/GraphGraphics.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/CustomGraphicsInfo.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/EdgeDetails.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/GraphRenderer.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/NodeDetails.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/spacial/SpacialEntry2DEnumerator.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/spacial/SpacialIndex2D.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/spacial/SpacialIndex2DFactory.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/spacial/internal/dummy/DummySpacial.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/spacial/internal/dummy/DummySpacialFactory.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/spacial/internal/rtree/ObjStack.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/spacial/internal/rtree/RTree.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/spacial/internal/rtree/RTreeFactory.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/NetworkViewTestSupport.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/impl/DGraphViewApplyTest.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/impl/DGraphViewTest.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/impl/DNodeViewTest.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/impl/cyannotator/AbstractAnnotationTest.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/ding/impl/cyannotator/AnnotatorStructureTest.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/graph/render/immed/OldGraphGraphics.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/graph/render/stateful/GraphRendererTest.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/spacial/internal/rtree/ArrayTestMethod1.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/spacial/internal/rtree/ArrayTestMethod2.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/spacial/internal/rtree/ArrayTestMethod3.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/spacial/internal/rtree/ArrayTestMethod4.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/spacial/internal/rtree/BasicQuietRTreeTestX.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/spacial/internal/rtree/NoRTreeQueryPerformance.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/spacial/internal/rtree/RTreeQueryPerformance.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/spacial/internal/rtree/RTreeSerializationPerformance.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/spacial/internal/rtree/RTreeUpdatePerformance.java
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ding-impl/ding-presentation-impl/src/test/java/org/cytoscape/view/DNetworkViewTest.java
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ding-impl/performance-debug/src/main/java/org/cytoscape/ding/internal/PerfTest.java
M filter2-impl/src/main/java/org/cytoscape/filter/internal/CyActivator.java
M
filter2-impl/src/main/java/org/cytoscape/filter/internal/FilterCytoPanelComponent.java
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filter2-impl/src/main/java/org/cytoscape/filter/internal/view/FilterPanel.java
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filter2-impl/src/main/java/org/cytoscape/filter/internal/view/TransformerPanel.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/xgmml/GenericXGMMLReader.java
M layout-impl/pom.xml
M
manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/CyActivator.java
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manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/AlignPanel.java
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manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/ControlPanel.java
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manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/DistPanel.java
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manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/LayoutToolsPanel.java
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manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/control/view/StackPanel.java
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manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/rotate/RotatePanel.java
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manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/scale/ScalePanel.java
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manual-layout-impl/src/main/java/org/cytoscape/view/manual/internal/util/IconUtil.java
M swing-application-impl/pom.xml
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swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
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swing-application-impl/src/main/java/org/cytoscape/internal/SessionHandler.java
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swing-application-impl/src/main/java/org/cytoscape/internal/actions/BookmarkAction.java
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swing-application-impl/src/main/java/org/cytoscape/internal/actions/CytoPanelAction.java
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swing-application-impl/src/main/java/org/cytoscape/internal/actions/PreferenceAction.java
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swing-application-impl/src/main/java/org/cytoscape/internal/actions/RecentSessionManager.java
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swing-application-impl/src/main/java/org/cytoscape/internal/command/CommandToolPanel.java
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swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/BookmarkDialogFactory.java
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swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/SettingsAction.java
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swing-application-impl/src/main/java/org/cytoscape/internal/select/RowViewTracker.java
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swing-application-impl/src/main/java/org/cytoscape/internal/task/CytoPanelTaskFactoryTunableAction.java
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swing-application-impl/src/main/java/org/cytoscape/internal/util/IconUtil.java
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swing-application-impl/src/main/java/org/cytoscape/internal/util/SimpleToolBarToggleButton.java
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swing-application-impl/src/main/java/org/cytoscape/internal/util/ViewUtil.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/AbstractNetworkPanelModel.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/BiModalJSplitPane.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelNameInternal.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelStateInternal.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenuBar.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenuPopulator.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenus.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeToolBar.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/ExpandCollapseButton.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/GridViewTogglePanel.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/MemStatusPanel.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMediator.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSearchBar.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSearchMediator.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSelectionMediator.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewComparisonPanel.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewContainer.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewFrame.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMainPanel.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMediator.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewPreviewDialog.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NullNetworkViewPanel.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/RootNetworkPanel.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/SubNetworkPanel.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ToggleableButtonGroup.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/util/VerticalButtonUI.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java
R swing-application-impl/src/main/resources/credits.txt
M swing-application-impl/src/main/resources/xsd/sessionState.xsd
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swing-application-impl/src/test/java/org/cytoscape/internal/view/CytoscapeDesktopTest.java
M swing-util-impl/src/main/resources/fonts/cytoscape-3.ttf
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table-browser-impl/src/main/java/org/cytoscape/browser/internal/util/IconUtil.java
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table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/AbstractTableBrowser.java
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table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/DefaultTableBrowser.java
M viewmodel-impl/impl/pom.xml
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/CyActivator.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewConfigImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewFactoryFactoryImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/debug/PrintSpacialIndexAction.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/debug/PrintViewModelAction.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyEdgeViewImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyNetworkViewFactoryImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyNetworkViewImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyNodeViewImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyViewBase.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/NetworkModelListener.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/VPNetworkStore.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/VPStore.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/ViewLock.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/snapshot/CyEdgeViewSnapshotImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/snapshot/CyNetworkViewSnapshotImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/snapshot/CyNodeViewSnapshotImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/snapshot/CyViewSnapshotBase.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DBase.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DFactoryImpl.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DSnapshotImpl.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndexStore.java
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viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewFactoryTestSupport.java
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viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewImplTest.java
A
viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewTestUtils.java
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viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/SpacialIndex2DTest.java
M viewmodel-impl/pom.xml
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMainPanel.java
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vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
Log Message:
-----------
Merge branch 'develop' into java11
Compare:
https://github.com/cytoscape/cytoscape-impl/compare/420199fa3589%5E...7d3692132116
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