Branch: refs/heads/java11
Home: https://github.com/cytoscape/cytoscape-impl
Commit: 86f34a83a85c76714c1768420add3c44443e9694
https://github.com/cytoscape/cytoscape-impl/commit/86f34a83a85c76714c1768420add3c44443e9694
Author: Mike Kucera <[email protected]>
Date: 2019-06-04 (Tue, 04 Jun 2019)
Changed paths:
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/BirdsEyeView.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InnerCanvas.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/NullCyNetworkViewImpl.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyEdgeViewImpl.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyNetworkViewImpl.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyNodeViewImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyViewBase.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/ViewLock.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/snapshot/CyViewSnapshotBase.java
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viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewImplTest.java
Log Message:
-----------
Birds-eye-view renders only when content changes.
Commit: 883e034d0299cab634ae257a54745eefae9241e9
https://github.com/cytoscape/cytoscape-impl/commit/883e034d0299cab634ae257a54745eefae9241e9
Author: Christian Lopes <[email protected]>
Date: 2019-06-05 (Wed, 05 Jun 2019)
Changed paths:
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
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CYTOSCAPE-12511 #comment The Table Panel divider can now be dragged all the
way to the top until the network view area is totally hidden. It can also be
dragged down to hide the tables.
Commit: ce6feabb278f7ecefdb75a2ed6086c3d29c7b604
https://github.com/cytoscape/cytoscape-impl/commit/ce6feabb278f7ecefdb75a2ed6086c3d29c7b604
Author: Christian Lopes <[email protected]>
Date: 2019-06-05 (Wed, 05 Jun 2019)
Changed paths:
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
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CYTOSCAPE-12511 #comment Making sure the Starter Panel has its minimum height
respected when it appears.
Commit: 1a1d69a0867497038452c141c1f114c06808e0b2
https://github.com/cytoscape/cytoscape-impl/commit/1a1d69a0867497038452c141c1f114c06808e0b2
Author: Christian Lopes <[email protected]>
Date: 2019-06-05 (Wed, 05 Jun 2019)
Changed paths:
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swing-application-impl/src/main/java/org/cytoscape/internal/view/BiModalJSplitPane.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
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CYTOSCAPE-12518 #comment Fixes bug that can inadvertently change a cytopanel
width or height when another cytopanel's state is changed (e.g. showing the
Results Panel messes up the size of the Table Panel).
Commit: bfab741d6863ed0ee67d87785dccf0fbd2274b44
https://github.com/cytoscape/cytoscape-impl/commit/bfab741d6863ed0ee67d87785dccf0fbd2274b44
Author: Christian Lopes <[email protected]>
Date: 2019-06-05 (Wed, 05 Jun 2019)
Changed paths:
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swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewComparisonPanel.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NullNetworkViewPanel.java
Log Message:
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Minor LAF-related tweak (JScrollPane background colour on Windows and Nimbus).
Commit: 5b85e9edc9089a139a8486f999ddc8ffdc8268bf
https://github.com/cytoscape/cytoscape-impl/commit/5b85e9edc9089a139a8486f999ddc8ffdc8268bf
Author: Mike Kucera <[email protected]>
Date: 2019-06-06 (Thu, 06 Jun 2019)
Changed paths:
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/GraphGraphics.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/GraphRenderer.java
Log Message:
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Fix bug where String network wasn't rendering.
Commit: 33fd307b7d68b2d4d3453500bc1dd398b398f1a0
https://github.com/cytoscape/cytoscape-impl/commit/33fd307b7d68b2d4d3453500bc1dd398b398f1a0
Author: Christian Lopes <[email protected]>
Date: 2019-06-06 (Thu, 06 Jun 2019)
Changed paths:
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ShowGraphicsDetailsTaskFactory.java
Log Message:
-----------
Fixes a NPE.
Commit: ec8172f477e9efc687858d3b5f00c7a597ab3d71
https://github.com/cytoscape/cytoscape-impl/commit/ec8172f477e9efc687858d3b5f00c7a597ab3d71
Author: Christian Lopes <[email protected]>
Date: 2019-06-06 (Thu, 06 Jun 2019)
Changed paths:
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/GraphGraphics.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/GraphRenderer.java
Log Message:
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Merge branch 'develop' of github.com:cytoscape/cytoscape-impl into develop
Commit: 6bb4fb207cdcef84282c9f6de956fabff96da6da
https://github.com/cytoscape/cytoscape-impl/commit/6bb4fb207cdcef84282c9f6de956fabff96da6da
Author: Christian Lopes <[email protected]>
Date: 2019-06-06 (Thu, 06 Jun 2019)
Changed paths:
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swing-application-impl/src/main/java/org/cytoscape/internal/actions/CytoPanelAction.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
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CYTOSCAPE-12518 #comment Automation panel is hidden (removed) by default
again. Adjusts the default undocked width of Automation and Table panels.
Commit: 9f6169b393a86f846ae79422a0b8e587a9fdb6bb
https://github.com/cytoscape/cytoscape-impl/commit/9f6169b393a86f846ae79422a0b8e587a9fdb6bb
Author: Christian Lopes <[email protected]>
Date: 2019-06-10 (Mon, 10 Jun 2019)
Changed paths:
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NullNetworkViewPanel.java
Log Message:
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CYTOSCAPE-12511 #comment Reverts previous change where the divider could be
dragged all the way to the top or bottom, because completely hiding the network
view or tables when the Table panel is docked could make the divider almost
disappear and confuse the user. However, the minimum height of the Network View
has been reduced a lot.
Commit: 67dfc522c4be41640d83e0837c112d34e9629554
https://github.com/cytoscape/cytoscape-impl/commit/67dfc522c4be41640d83e0837c112d34e9629554
Author: Mike Kucera <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ViewChangeEdit.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/AbstractViewDefaultSupport.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/AddEdgeBeginTask.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/AddEdgeTask.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/ButtonDelegator.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/ViewState.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/CyAnnotator.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/AnnotationEdit.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/AddEdgeEdit.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/AnnotationEdit.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/CompositeCyEdit.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/ViewChangeEdit.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/ViewState.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/CompositeCyEdit.java
A editor-impl/src/main/java/org/cytoscape/editor/internal/AddNodeEdit.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/AddNodeTask.java
M
editor-impl/src/main/java/org/cytoscape/editor/internal/AddNodeTaskFactory.java
Log Message:
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Renderer: fixes click-and-drag undo, and node and edge creation undo
Commit: 8d1cd0aaabea4b172ea7e6c4ac4b5d6deca4df94
https://github.com/cytoscape/cytoscape-impl/commit/8d1cd0aaabea4b172ea7e6c4ac4b5d6deca4df94
Author: Mike Kucera <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DNodeDetails.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/NodeDetails.java
Log Message:
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Renderer: fix nested network feature
Commit: ccdb19f5a617f91ec688d9daff651670be6c26af
https://github.com/cytoscape/cytoscape-impl/commit/ccdb19f5a617f91ec688d9daff651670be6c26af
Author: Christian Lopes <[email protected]>
Date: 2019-06-12 (Wed, 12 Jun 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
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CYTOSCAPE-12518 #comment Saves/restores the preferred sizes of UNDOCKED
cytopanels when their states are changed.
Commit: c75daa384ea48fec7e34c12007be30a1b24a9900
https://github.com/cytoscape/cytoscape-impl/commit/c75daa384ea48fec7e34c12007be30a1b24a9900
Author: Christian Lopes <[email protected]>
Date: 2019-06-13 (Thu, 13 Jun 2019)
Changed paths:
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java
Log Message:
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CYTOSCAPE-12518 #comment Minimizes any undocked panel when the Starter Panel
appears, or the popup could hide the Starter Panel. Also sets better (and
dynamic) initial preferred size and minimum size to the Starter Panel to try to
show at least one row of thumbnails for each section.
Commit: bd02bcae817bd73cb3c8f920f0cf680e1f203f35
https://github.com/cytoscape/cytoscape-impl/commit/bd02bcae817bd73cb3c8f920f0cf680e1f203f35
Author: Christian Lopes <[email protected]>
Date: 2019-06-13 (Thu, 13 Jun 2019)
Changed paths:
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swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMainPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMediator.java
Log Message:
-----------
Fixes Exception thrown during CyShutDownEvents because IconManager service
was not available anymore.
Commit: 6df229d15092f3de70a66abfdfa6983aa242de95
https://github.com/cytoscape/cytoscape-impl/commit/6df229d15092f3de70a66abfdfa6983aa242de95
Author: Mike Kucera <[email protected]>
Date: 2019-06-17 (Mon, 17 Jun 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/GraphRenderer.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewConfigImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewFactoryFactoryImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyNetworkViewImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/snapshot/CyNetworkViewSnapshotImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DBase.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DSnapshotImpl.java
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viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewTestUtils.java
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viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/SpacialIndex2DTest.java
Log Message:
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Sort by z-order in SpacialIndex2D and remove from ding.
Commit: 79ed31becbb37be11a34e11de201d7ba70449964
https://github.com/cytoscape/cytoscape-impl/commit/79ed31becbb37be11a34e11de201d7ba70449964
Author: Mike Kucera <[email protected]>
Date: 2019-06-17 (Mon, 17 Jun 2019)
Changed paths:
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DSnapshotImpl.java
Log Message:
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Remove z-order tie break using suid
Commit: 3d3706b7f2c7365c929a6851f1836e789fdd9a0c
https://github.com/cytoscape/cytoscape-impl/commit/3d3706b7f2c7365c929a6851f1836e789fdd9a0c
Author: Mike Kucera <[email protected]>
Date: 2019-06-17 (Mon, 17 Jun 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
Log Message:
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Fix tool tips in renderer.
Commit: ff56981ad23e0d253b530c20c4b3cf2307282fcd
https://github.com/cytoscape/cytoscape-impl/commit/ff56981ad23e0d253b530c20c4b3cf2307282fcd
Author: Christian Lopes <[email protected]>
Date: 2019-06-17 (Mon, 17 Jun 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ToggleableButtonGroup.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/VerticalButtonUI.java
Log Message:
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CYTOSCAPE-12518 #comment Fixes bug where the selected sidebar button is not
rendered as selected the first time the panel is undocked. Also improves the
dynamic SOUTH sidebar's left/right paddings, so its buttons align with the
WEST/EAST sidebars every time.
Commit: 3fdb69fddc76352eb6ca96364e850474262eeefa
https://github.com/cytoscape/cytoscape-impl/commit/3fdb69fddc76352eb6ca96364e850474262eeefa
Author: Mike Kucera <[email protected]>
Date: 2019-06-19 (Wed, 19 Jun 2019)
Changed paths:
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/CyActivator.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewFactoryFactoryImpl.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyNetworkViewImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/snapshot/CyNetworkViewSnapshotImpl.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/RTreeSpacialIndex2DBase.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/RTreeSpacialIndex2DFactoryImpl.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/RTreeSpacialIndex2DImpl.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/RTreeSpacialIndex2DSnapshotImpl.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/RTreeSpacialIndexStore.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SimpleSpacialIndex2DSnapshotImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DBase.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DFactoryImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DSnapshotImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndexStore.java
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viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewFactoryTestSupport.java
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viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewTestUtils.java
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viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/SpacialIndex2DTest.java
Log Message:
-----------
Turn off RTree for now.
Commit: ed2bd22771e0ca8a559fb00e16ca0a535796287f
https://github.com/cytoscape/cytoscape-impl/commit/ed2bd22771e0ca8a559fb00e16ca0a535796287f
Author: Christian Lopes <[email protected]>
Date: 2019-06-21 (Fri, 21 Jun 2019)
Changed paths:
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filter2-impl/src/main/java/org/cytoscape/filter/internal/FilterCytoPanelComponent.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelNameInternal.java
Log Message:
-----------
CYTOSCAPE-12518 #comment "Select" tab renamed to "Filter". "Automation Panel"
renamed to "Command Panel", otherwise it could be hard for the user to
understand what "Automation Panel" means, since the CytoPanel title is no no
longer shown all the time, but only when the cytopanel is floating and in the
menu and context-menus.
Commit: 991c93b5086bc75cf9bc75d3886c382c836a168d
https://github.com/cytoscape/cytoscape-impl/commit/991c93b5086bc75cf9bc75d3886c382c836a168d
Author: Christian Lopes <[email protected]>
Date: 2019-06-24 (Mon, 24 Jun 2019)
Changed paths:
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graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLParser.java
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graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLToken.java
M
graphml-impl/src/test/java/org/cytoscape/data/reader/graphml/GraphMLReaderTest.java
A graphml-impl/src/test/resources/desc.graphml
Log Message:
-----------
CYTOSCAPE-12426 #comment GraphML's <desc> tags are now imported as "name"
columns for networks, nodes and edges.
Commit: b21806906223dd3cfa1cae6ec798d9c7c8643b57
https://github.com/cytoscape/cytoscape-impl/commit/b21806906223dd3cfa1cae6ec798d9c7c8643b57
Author: Christian Lopes <[email protected]>
Date: 2019-06-24 (Mon, 24 Jun 2019)
Changed paths:
M
graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLParser.java
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graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLToken.java
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graphml-impl/src/test/java/org/cytoscape/data/reader/graphml/GraphMLReaderTest.java
Log Message:
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Minor refactoring.
Commit: 737915d26cecdaf4c7adde34c70a225ac8f36243
https://github.com/cytoscape/cytoscape-impl/commit/737915d26cecdaf4c7adde34c70a225ac8f36243
Author: Christian Lopes <[email protected]>
Date: 2019-06-25 (Tue, 25 Jun 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java
A
swing-application-impl/src/test/java/org/cytoscape/internal/view/util/ViewUtilTest.java
Log Message:
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CYTOSCAPE-12518 #comment The default (auto-generated) icon for sidebar
buttons are now coloured and can have up to 2 characters.
Commit: 64fd908d463c5a9941f6e23fc05a879d3b0e84a6
https://github.com/cytoscape/cytoscape-impl/commit/64fd908d463c5a9941f6e23fc05a879d3b0e84a6
Author: Christian Lopes <[email protected]>
Date: 2019-07-03 (Wed, 03 Jul 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeToolBar.java
Log Message:
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CYTOSCAPE-12520 #comment Hides duplicate separators after updating the toolbar
Commit: 21ab969dc961d7316c0daa20234a30854074ea64
https://github.com/cytoscape/cytoscape-impl/commit/21ab969dc961d7316c0daa20234a30854074ea64
Author: Christian Lopes <[email protected]>
Date: 2019-07-03 (Wed, 03 Jul 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenus.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeToolBar.java
A swing-application-impl/src/main/resources/toolbar.stoplist
Log Message:
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CYTOSCAPE-12505 #comment Adds capability to read toolbar.stoplist file from
bundle's jar so we can create toolbar icons that are hidden by default.
Commit: 8c9e96aa6d15b86c7a111685e0aafe1e9d9a9dfb
https://github.com/cytoscape/cytoscape-impl/commit/8c9e96aa6d15b86c7a111685e0aafe1e9d9a9dfb
Author: Christian Lopes <[email protected]>
Date: 2019-07-03 (Wed, 03 Jul 2019)
Changed paths:
M
core-task-impl/src/main/java/org/cytoscape/task/internal/utils/IconUtil.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/actions/StarterPanelAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
CYTOSCAPE-12505 #comment Adds "Show Starter Panel" icon to toolbar (visible
by default).
Commit: e4dcedb28ac259b9c30cc68203f5677c9119f5ae
https://github.com/cytoscape/cytoscape-impl/commit/e4dcedb28ac259b9c30cc68203f5677c9119f5ae
Author: Christian Lopes <[email protected]>
Date: 2019-07-04 (Thu, 04 Jul 2019)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
Log Message:
-----------
CYTOSCAPE-12518 #comment Fixes bug that would select the wrong
CytoPanelComponent after the component indexes were changed (e.g. after
removing an app's CytoPanelComponent).
Commit: 29546cb0fb300bead998735f4fd67cabdb1ced10
https://github.com/cytoscape/cytoscape-impl/commit/29546cb0fb300bead998735f4fd67cabdb1ced10
Author: D <[email protected]>
Date: 2019-07-16 (Tue, 16 Jul 2019)
Changed paths:
M
core-task-impl/src/main/java/org/cytoscape/task/internal/utils/IconUtil.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ShowGraphicsDetailsTaskFactory.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/ViewChangeEdit.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/AbstractViewDefaultSupport.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/AddEdgeBeginTask.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/AddEdgeTask.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/BirdsEyeView.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/ButtonDelegator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DNodeDetails.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InnerCanvas.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/ViewState.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/CyAnnotator.java
R
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/tasks/AnnotationEdit.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/AddEdgeEdit.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/AnnotationEdit.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/CompositeCyEdit.java
A
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/ViewChangeEdit.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/ViewState.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/internal/util/CompositeCyEdit.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/immed/GraphGraphics.java
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ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/GraphRenderer.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/graph/render/stateful/NodeDetails.java
A editor-impl/src/main/java/org/cytoscape/editor/internal/AddNodeEdit.java
M editor-impl/src/main/java/org/cytoscape/editor/internal/AddNodeTask.java
M
editor-impl/src/main/java/org/cytoscape/editor/internal/AddNodeTaskFactory.java
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filter2-impl/src/main/java/org/cytoscape/filter/internal/FilterCytoPanelComponent.java
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graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLParser.java
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graphml-impl/src/main/java/org/cytoscape/io/internal/read/graphml/GraphMLToken.java
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graphml-impl/src/test/java/org/cytoscape/data/reader/graphml/GraphMLReaderTest.java
A graphml-impl/src/test/resources/desc.graphml
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swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
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swing-application-impl/src/main/java/org/cytoscape/internal/actions/CytoPanelAction.java
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swing-application-impl/src/main/java/org/cytoscape/internal/actions/StarterPanelAction.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/BiModalJSplitPane.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelImpl.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoPanelNameInternal.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeDesktop.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenus.java
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swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeToolBar.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewComparisonPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewGrid.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMainPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkViewMediator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NullNetworkViewPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ToggleableButtonGroup.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/VerticalButtonUI.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/ViewUtil.java
A swing-application-impl/src/main/resources/toolbar.stoplist
A
swing-application-impl/src/test/java/org/cytoscape/internal/view/util/ViewUtilTest.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/CyActivator.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewConfigImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/CyNetworkViewFactoryFactoryImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/NullCyNetworkViewImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyEdgeViewImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyNetworkViewImpl.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyNodeViewImpl.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyViewBase.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/ViewLock.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/snapshot/CyNetworkViewSnapshotImpl.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/snapshot/CyViewSnapshotBase.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/RTreeSpacialIndex2DBase.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/RTreeSpacialIndex2DFactoryImpl.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/RTreeSpacialIndex2DImpl.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/RTreeSpacialIndex2DSnapshotImpl.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/RTreeSpacialIndexStore.java
A
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SimpleSpacialIndex2DSnapshotImpl.java
R
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DBase.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DFactoryImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndex2DSnapshotImpl.java
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viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/spacial/SpacialIndexStore.java
M
viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewFactoryTestSupport.java
M
viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewImplTest.java
M
viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewTestUtils.java
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viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/SpacialIndex2DTest.java
Log Message:
-----------
Merge branch 'develop' into java11
Compare:
https://github.com/cytoscape/cytoscape-impl/compare/7d3692132116...29546cb0fb30
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