Branch: refs/heads/develop
Home: https://github.com/cytoscape/cytoscape-api
Commit: b92b7b84eef2ebac6970be71bb817fdd270ba231
https://github.com/cytoscape/cytoscape-api/commit/b92b7b84eef2ebac6970be71bb817fdd270ba231
Author: D <dotasek....@gmail.com>
Date: 2019-03-26 (Tue, 26 Mar 2019)
Changed paths:
M app-api/pom.xml
M pom.xml
M swing-app-api/pom.xml
Log Message:
-----------
Temporarily remove breaking javadoc compile and taglets
Commit: c0f4050007c50161b92ef12adc4aff813fdb0d8f
https://github.com/cytoscape/cytoscape-api/commit/c0f4050007c50161b92ef12adc4aff813fdb0d8f
Author: D <dotasek....@gmail.com>
Date: 2019-03-26 (Tue, 26 Mar 2019)
Changed paths:
M property-api/pom.xml
Log Message:
-----------
Update maven-jaxb2-plugin version
Commit: 81be9021a83e3dfe7832e29cce882b307f559442
https://github.com/cytoscape/cytoscape-api/commit/81be9021a83e3dfe7832e29cce882b307f559442
Author: D <dotasek....@gmail.com>
Date: 2019-05-22 (Wed, 22 May 2019)
Changed paths:
M
layout-api/src/main/java/org/cytoscape/view/layout/CyLayoutAlgorithmManager.java
M
swing-util-api/src/main/java/org/cytoscape/util/swing/BasicCollapsiblePanel.java
M
swing-util-api/src/main/java/org/cytoscape/util/swing/DropDownMenuButton.java
R swing-util-api/src/main/resources/images/arrow_collapsed.png
R swing-util-api/src/main/resources/images/arrow_expanded.png
M util-api/src/main/java/org/cytoscape/util/color/Palette.java
M work-api/src/main/java/org/cytoscape/work/util/ListChangeListener.java
Log Message:
-----------
Merge remote-tracking branch 'origin/develop' into java11
Commit: 7d61838be9bb1cbb77cbf0b53587ef0d42451131
https://github.com/cytoscape/cytoscape-api/commit/7d61838be9bb1cbb77cbf0b53587ef0d42451131
Author: D <dotasek....@gmail.com>
Date: 2019-05-23 (Thu, 23 May 2019)
Changed paths:
M api-bundle/pom.xml
Log Message:
-----------
Use parent bundle plugin
Commit: 5e7a041ac58c0158b0f83660c3ea16c5b722e5bc
https://github.com/cytoscape/cytoscape-api/commit/5e7a041ac58c0158b0f83660c3ea16c5b722e5bc
Author: D <dotasek....@gmail.com>
Date: 2019-05-23 (Thu, 23 May 2019)
Changed paths:
M property-api/pom.xml
Log Message:
-----------
Add jaxb dependences + update to mockito-core
Commit: d350362979148e36ae187448f6ce57748642a9bb
https://github.com/cytoscape/cytoscape-api/commit/d350362979148e36ae187448f6ce57748642a9bb
Author: D <dotasek....@gmail.com>
Date: 2019-05-23 (Thu, 23 May 2019)
Changed paths:
M app-api/pom.xml
M application-api/pom.xml
M command-executor-api/pom.xml
M core-task-api/pom.xml
M datasource-api/pom.xml
M equations-api/pom.xml
M event-api/pom.xml
M group-api/pom.xml
M io-api/pom.xml
M jobs-api/pom.xml
M layout-api/pom.xml
M model-api/pom.xml
M pom.xml
M presentation-api/pom.xml
M service-api/pom.xml
M session-api/pom.xml
M swing-app-api/pom.xml
M swing-application-api/pom.xml
M swing-util-api/pom.xml
M taglets/pom.xml
M viewmodel-api/pom.xml
M vizmap-api/pom.xml
M vizmap-gui-api/pom.xml
M webservice-api/pom.xml
M webservice-swing-api/pom.xml
M work-api/pom.xml
M work-swing-api/pom.xml
Log Message:
-----------
Update to mockito-core
Commit: 5dccf45f2a038aee5e71a0e1b9d5785ee74b6fb1
https://github.com/cytoscape/cytoscape-api/commit/5dccf45f2a038aee5e71a0e1b9d5785ee74b6fb1
Author: D <dotasek....@gmail.com>
Date: 2019-05-30 (Thu, 30 May 2019)
Changed paths:
M jobs-api/pom.xml
Log Message:
-----------
Fix inherited groupId
Commit: 4a0b20ddd9f2d8739409aabeb40310e8992ff946
https://github.com/cytoscape/cytoscape-api/commit/4a0b20ddd9f2d8739409aabeb40310e8992ff946
Author: D <dotasek....@gmail.com>
Date: 2019-05-30 (Thu, 30 May 2019)
Changed paths:
M app-api/pom.xml
Log Message:
-----------
Some attempts to fix javadoc production
Commit: 23e9d84164931d7afe60ba952b97af6617e2b91a
https://github.com/cytoscape/cytoscape-api/commit/23e9d84164931d7afe60ba952b97af6617e2b91a
Author: Cytoscape <dotasek....@gmail.com>
Date: 2019-05-30 (Thu, 30 May 2019)
Changed paths:
M
layout-api/src/main/java/org/cytoscape/view/layout/CyLayoutAlgorithmManager.java
M
swing-util-api/src/main/java/org/cytoscape/util/swing/BasicCollapsiblePanel.java
M
swing-util-api/src/main/java/org/cytoscape/util/swing/DropDownMenuButton.java
R swing-util-api/src/main/resources/images/arrow_collapsed.png
R swing-util-api/src/main/resources/images/arrow_expanded.png
M util-api/src/main/java/org/cytoscape/util/color/Palette.java
M work-api/src/main/java/org/cytoscape/work/util/ListChangeListener.java
Log Message:
-----------
Merge branch 'develop' of github.com:cytoscape/cytoscape-api into develop
Merge to Java 11 branch
Commit: 2a67d10239ee6f7bce0a49898740354caed50a1f
https://github.com/cytoscape/cytoscape-api/commit/2a67d10239ee6f7bce0a49898740354caed50a1f
Author: Cytoscape <dotasek....@gmail.com>
Date: 2019-06-03 (Mon, 03 Jun 2019)
Changed paths:
M viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkView.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkViewConfig.java
M
viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkViewFactory.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkViewFactoryFactory.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkViewListener.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkViewSnapshot.java
A viewmodel-api/src/main/java/org/cytoscape/view/model/SnapshotEdgeInfo.java
A viewmodel-api/src/main/java/org/cytoscape/view/model/SnapshotNodeInfo.java
M viewmodel-api/src/main/java/org/cytoscape/view/model/View.java
M viewmodel-api/src/main/java/org/cytoscape/view/model/VisualLexicon.java
M
viewmodel-api/src/main/java/org/cytoscape/view/model/VisualLexiconNode.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/spacial/SpacialIndex2D.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/spacial/SpacialIndex2DEnumerator.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/spacial/SpacialIndex2DFactory.java
Log Message:
-----------
Merge branch 'develop' of github.com:cytoscape/cytoscape-api into develop
Commit: 16ca8808be2d47d690cfaa8f1a520278ea9dc5a7
https://github.com/cytoscape/cytoscape-api/commit/16ca8808be2d47d690cfaa8f1a520278ea9dc5a7
Author: D <dotasek....@gmail.com>
Date: 2019-06-03 (Mon, 03 Jun 2019)
Changed paths:
M viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkView.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkViewConfig.java
M
viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkViewFactory.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkViewFactoryFactory.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkViewListener.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkViewSnapshot.java
A viewmodel-api/src/main/java/org/cytoscape/view/model/SnapshotEdgeInfo.java
A viewmodel-api/src/main/java/org/cytoscape/view/model/SnapshotNodeInfo.java
M viewmodel-api/src/main/java/org/cytoscape/view/model/View.java
M viewmodel-api/src/main/java/org/cytoscape/view/model/VisualLexicon.java
M
viewmodel-api/src/main/java/org/cytoscape/view/model/VisualLexiconNode.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/spacial/SpacialIndex2D.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/spacial/SpacialIndex2DEnumerator.java
A
viewmodel-api/src/main/java/org/cytoscape/view/model/spacial/SpacialIndex2DFactory.java
Log Message:
-----------
Merge branch 'develop' into java11
Commit: 21fcfb003696962cf5c729357eb7c4c93619d61d
https://github.com/cytoscape/cytoscape-api/commit/21fcfb003696962cf5c729357eb7c4c93619d61d
Author: D <dotasek....@gmail.com>
Date: 2019-07-16 (Tue, 16 Jul 2019)
Changed paths:
M
viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkViewConfig.java
M
viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkViewSnapshot.java
M viewmodel-api/src/main/java/org/cytoscape/view/model/View.java
Log Message:
-----------
Merge branch 'develop' into java11
Commit: 0f1390b6a8f336fb5f2d6c3af60e3159faf81fcc
https://github.com/cytoscape/cytoscape-api/commit/0f1390b6a8f336fb5f2d6c3af60e3159faf81fcc
Author: D <dotasek....@gmail.com>
Date: 2019-08-02 (Fri, 02 Aug 2019)
Changed paths:
M api-bundle/pom.xml
M application-api/pom.xml
M ci-api/pom.xml
M command-executor-api/pom.xml
M core-task-api/pom.xml
M datasource-api/pom.xml
M equations-api/pom.xml
M event-api/pom.xml
M filter-api/pom.xml
M group-api/pom.xml
M io-api/pom.xml
M jobs-api/pom.xml
M layout-api/pom.xml
M model-api/pom.xml
M presentation-api/pom.xml
M property-api/pom.xml
M service-api/pom.xml
M session-api/pom.xml
M swing-app-api/pom.xml
M swing-application-api/pom.xml
M swing-util-api/pom.xml
M taglets/pom.xml
M util-api/pom.xml
M viewmodel-api/pom.xml
M vizmap-api/pom.xml
M vizmap-gui-api/pom.xml
M webservice-api/pom.xml
M webservice-swing-api/pom.xml
M work-api/pom.xml
M work-swing-api/pom.xml
Log Message:
-----------
Update repos to nrnb-nexus
Commit: 038b60974599c2f3a9afaf794df8c577fb7d133a
https://github.com/cytoscape/cytoscape-api/commit/038b60974599c2f3a9afaf794df8c577fb7d133a
Author: D <dotasek....@gmail.com>
Date: 2019-08-02 (Fri, 02 Aug 2019)
Changed paths:
M pom.xml
Log Message:
-----------
Remove duplicate version
Commit: bb4e8f90dac723ebcf7d1bbf9aafc30b965a5f05
https://github.com/cytoscape/cytoscape-api/commit/bb4e8f90dac723ebcf7d1bbf9aafc30b965a5f05
Author: D <dotasek....@gmail.com>
Date: 2019-08-02 (Fri, 02 Aug 2019)
Changed paths:
A .travis.settings.xml
M .travis.yml
Log Message:
-----------
Update travis.yml add travis.settings.xml
Commit: 76a8880a4daf6530f8756ec35da6f76c820d4c45
https://github.com/cytoscape/cytoscape-api/commit/76a8880a4daf6530f8756ec35da6f76c820d4c45
Author: dotasek <dotasek....@gmail.com>
Date: 2019-08-02 (Fri, 02 Aug 2019)
Changed paths:
M .travis.yml
Log Message:
-----------
Update .travis.yml
Commit: 77de9f3eea351f951265ce9423e715cd4de863ee
https://github.com/cytoscape/cytoscape-api/commit/77de9f3eea351f951265ce9423e715cd4de863ee
Author: dotasek <dotasek....@gmail.com>
Date: 2019-08-02 (Fri, 02 Aug 2019)
Changed paths:
M .travis.yml
Log Message:
-----------
Update .travis.yml
Commit: 4b7a51e77390dff4971f6fddac462e0e54fd634e
https://github.com/cytoscape/cytoscape-api/commit/4b7a51e77390dff4971f6fddac462e0e54fd634e
Author: dotasek <dotasek....@gmail.com>
Date: 2019-08-02 (Fri, 02 Aug 2019)
Changed paths:
M .travis.yml
Log Message:
-----------
Add display and xvfb to solve travis headless exception
Commit: cac2b8cb20abc448d13dcc6e81b604256be67062
https://github.com/cytoscape/cytoscape-api/commit/cac2b8cb20abc448d13dcc6e81b604256be67062
Author: dotasek <dotasek....@gmail.com>
Date: 2019-08-02 (Fri, 02 Aug 2019)
Changed paths:
M .travis.yml
Log Message:
-----------
Change xvfb declaration
Commit: 90633763a6d6b94b355be1b25e865de01ee122fb
https://github.com/cytoscape/cytoscape-api/commit/90633763a6d6b94b355be1b25e865de01ee122fb
Author: dotasek <dotasek....@gmail.com>
Date: 2019-08-06 (Tue, 06 Aug 2019)
Changed paths:
M .travis.yml
Log Message:
-----------
Update .travis.yml
Commit: d2446a8e5ef6991ed38f7c0699c41b29b5505b48
https://github.com/cytoscape/cytoscape-api/commit/d2446a8e5ef6991ed38f7c0699c41b29b5505b48
Author: D <dotasek....@gmail.com>
Date: 2019-08-13 (Tue, 13 Aug 2019)
Changed paths:
M taglets/pom.xml
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/AbstractApiTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/AbstractClassTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/ApiInterfaceTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/EnumClassTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/FinalClassTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/InModuleTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/SpiInterfaceTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/StaticClassTaglet.java
M
taglets/src/test/java/org/cytoscape/taglets/compatibility/AbstractTagletTester.java
Log Message:
-----------
taglet refactor
Commit: 210d5d968a5d7bf0c8b49362e261c55ac9e939b8
https://github.com/cytoscape/cytoscape-api/commit/210d5d968a5d7bf0c8b49362e261c55ac9e939b8
Author: D <dotasek....@gmail.com>
Date: 2019-08-13 (Tue, 13 Aug 2019)
Changed paths:
M app-api/pom.xml
Log Message:
-----------
Update javadoc link sources
Commit: 00b1e4d3d4cfb3d551246ffbb09885cb406ded56
https://github.com/cytoscape/cytoscape-api/commit/00b1e4d3d4cfb3d551246ffbb09885cb406ded56
Author: D <dotasek....@gmail.com>
Date: 2019-08-13 (Tue, 13 Aug 2019)
Changed paths:
M pom.xml
Log Message:
-----------
Uncomment taglets
Commit: ed32615bc8323cf2b0b8e179e52cae12ff2169fc
https://github.com/cytoscape/cytoscape-api/commit/ed32615bc8323cf2b0b8e179e52cae12ff2169fc
Author: D <dotasek....@gmail.com>
Date: 2019-08-14 (Wed, 14 Aug 2019)
Changed paths:
M swing-application-api/pom.xml
Log Message:
-----------
Add javax as dependency
Commit: cdf9f90b128b42d4d2531e711148280cbfd5d6b8
https://github.com/cytoscape/cytoscape-api/commit/cdf9f90b128b42d4d2531e711148280cbfd5d6b8
Author: D <dotasek....@gmail.com>
Date: 2019-08-16 (Fri, 16 Aug 2019)
Changed paths:
M app-api/pom.xml
Log Message:
-----------
Switch to regular jar instead of aggregate jar for javadoc
Commit: 15fec711bc28972b9e692c66430d097e95bd8f08
https://github.com/cytoscape/cytoscape-api/commit/15fec711bc28972b9e692c66430d097e95bd8f08
Author: D <dotasek....@gmail.com>
Date: 2019-08-16 (Fri, 16 Aug 2019)
Changed paths:
M property-api/pom.xml
M swing-app-api/pom.xml
Log Message:
-----------
Enable javadoc generation for swing-app-api
Commit: 0cd2a105e3ded7534fd8d541d8178e675f38e676
https://github.com/cytoscape/cytoscape-api/commit/0cd2a105e3ded7534fd8d541d8178e675f38e676
Author: D <dotasek....@gmail.com>
Date: 2019-08-16 (Fri, 16 Aug 2019)
Changed paths:
M app-api/pom.xml
Log Message:
-----------
Remove explicit links from javadoc (inherit intead)
Commit: 154ddfc297b4a5438f2324446fa8eaf635c95d89
https://github.com/cytoscape/cytoscape-api/commit/154ddfc297b4a5438f2324446fa8eaf635c95d89
Author: D <dotasek....@gmail.com>
Date: 2019-08-19 (Mon, 19 Aug 2019)
Changed paths:
M app-api/pom.xml
M pom.xml
M property-api/pom.xml
M swing-app-api/pom.xml
M swing-application-api/pom.xml
M taglets/pom.xml
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/AbstractApiTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/AbstractClassTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/ApiInterfaceTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/EnumClassTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/FinalClassTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/InModuleTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/SpiInterfaceTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/StaticClassTaglet.java
M
taglets/src/test/java/org/cytoscape/taglets/compatibility/AbstractTagletTester.java
Log Message:
-----------
Merge branch 'java11-javadoc' into java11
Commit: 3b842690d98912f21276a80dde13cc15a23aca31
https://github.com/cytoscape/cytoscape-api/commit/3b842690d98912f21276a80dde13cc15a23aca31
Author: D <dotasek....@gmail.com>
Date: 2019-08-19 (Mon, 19 Aug 2019)
Changed paths:
A .travis.settings.xml
M .travis.yml
M api-bundle/pom.xml
M app-api/pom.xml
M application-api/pom.xml
M ci-api/pom.xml
M command-executor-api/pom.xml
M core-task-api/pom.xml
M datasource-api/pom.xml
M equations-api/pom.xml
M event-api/pom.xml
M filter-api/pom.xml
M group-api/pom.xml
M io-api/pom.xml
M jobs-api/pom.xml
M layout-api/pom.xml
M model-api/pom.xml
M pom.xml
M presentation-api/pom.xml
M property-api/pom.xml
M service-api/pom.xml
M session-api/pom.xml
M swing-app-api/pom.xml
M swing-application-api/pom.xml
M swing-util-api/pom.xml
M taglets/pom.xml
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/AbstractApiTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/AbstractClassTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/ApiInterfaceTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/EnumClassTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/FinalClassTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/InModuleTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/SpiInterfaceTaglet.java
M
taglets/src/main/java/org/cytoscape/taglets/compatibility/StaticClassTaglet.java
M
taglets/src/test/java/org/cytoscape/taglets/compatibility/AbstractTagletTester.java
M util-api/pom.xml
M viewmodel-api/pom.xml
M vizmap-api/pom.xml
M vizmap-gui-api/pom.xml
M webservice-api/pom.xml
M webservice-swing-api/pom.xml
M work-api/pom.xml
M work-swing-api/pom.xml
Log Message:
-----------
Merge branch 'java11' into develop
Compare:
https://github.com/cytoscape/cytoscape-api/compare/9d0b4f86a32d...3b842690d989
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