Branch: refs/heads/csd-168
Home: https://github.com/cytoscape/cytoscape-impl
Commit: a82e44c1e5b93f78d56673f4b3bf6cff220e8554
https://github.com/cytoscape/cytoscape-impl/commit/a82e44c1e5b93f78d56673f4b3bf6cff220e8554
Author: Mike Kucera <[email protected]>
Date: 2019-09-22 (Sun, 22 Sep 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
Log Message:
-----------
Fix group collapse/expand on double-click.
Commit: 42e8b2ab6da3806febad42cbf9a7d228f3205bb7
https://github.com/cytoscape/cytoscape-impl/commit/42e8b2ab6da3806febad42cbf9a7d228f3205bb7
Author: Mike Kucera <[email protected]>
Date: 2019-09-25 (Wed, 25 Sep 2019)
Changed paths:
M linkout-impl/src/main/java/org/cytoscape/linkout/internal/LinkOut.java
Log Message:
-----------
Merge branch 'develop' of [email protected]:cytoscape/cytoscape-impl.git into
develop
Commit: 487c829e0cd6b22dd1499610b0bff3bc70650c2c
https://github.com/cytoscape/cytoscape-impl/commit/487c829e0cd6b22dd1499610b0bff3bc70650c2c
Author: Mike Kucera <[email protected]>
Date: 2019-09-25 (Wed, 25 Sep 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/CompositeImageCanvas.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/RenderComponent.java
Log Message:
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Avoid flicker when selecting nodes.
Commit: 51e496cdb1fbeaf10674cfaece5b1388ad20053b
https://github.com/cytoscape/cytoscape-impl/commit/51e496cdb1fbeaf10674cfaece5b1388ad20053b
Author: Mike Kucera <[email protected]>
Date: 2019-09-26 (Thu, 26 Sep 2019)
Changed paths:
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/NullCyNetworkViewImpl.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyNetworkViewImpl.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyViewBase.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/ViewLock.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/snapshot/CyViewSnapshotBase.java
A
viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewBatchTest.java
M
viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewImplTest.java
M
viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewTestUtils.java
Log Message:
-----------
Fix semantics of View.batch()
Commit: f61d40b9cdf7a249c6cdc20cd2fb8dbc09c0b09c
https://github.com/cytoscape/cytoscape-impl/commit/f61d40b9cdf7a249c6cdc20cd2fb8dbc09c0b09c
Author: Mike Kucera <[email protected]>
Date: 2019-09-26 (Thu, 26 Sep 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
Log Message:
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Reduce number of frames on selection.
Commit: 2fb5e8aa199da45c78f8678476f618dca552f06e
https://github.com/cytoscape/cytoscape-impl/commit/2fb5e8aa199da45c78f8678476f618dca552f06e
Author: Mike Kucera <[email protected]>
Date: 2019-09-26 (Thu, 26 Sep 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/CyActivator.java
Log Message:
-----------
Disable DingDebug panel by default.
Commit: fadf96bdf9c2bc87e9d128853376b3fad85f04cb
https://github.com/cytoscape/cytoscape-impl/commit/fadf96bdf9c2bc87e9d128853376b3fad85f04cb
Author: Mike Kucera <[email protected]>
Date: 2019-09-26 (Thu, 26 Sep 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ShapeAnnotationPanel.java
Log Message:
-----------
Remove custom shape from dialog.
Commit: d7c23a80254c2b1b13a5342a9095532b8d40bbe7
https://github.com/cytoscape/cytoscape-impl/commit/d7c23a80254c2b1b13a5342a9095532b8d40bbe7
Author: Mike Kucera <[email protected]>
Date: 2019-09-27 (Fri, 27 Sep 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/PrintLOD.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/BitmapWriter.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PDFWriter.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PNGWriter.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PSWriter.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/SVGWriter.java
Log Message:
-----------
CYTOSCAPE-11066 Add "hide labels" option to network image export
dialogs.
Commit: 5ee40df6c47b03a74bb0084eeeb5f2f6be12a4b0
https://github.com/cytoscape/cytoscape-impl/commit/5ee40df6c47b03a74bb0084eeeb5f2f6be12a4b0
Author: D <[email protected]>
Date: 2019-09-27 (Fri, 27 Sep 2019)
Changed paths:
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/PopupMenuHelper.java
Log Message:
-----------
Add copy/paste cells to table popup menu
Helps improve CYTOSCAPE-12535
Commit: 1866004b3a7c14e28fa8f01c800a0720d9e417f0
https://github.com/cytoscape/cytoscape-impl/commit/1866004b3a7c14e28fa8f01c800a0720d9e417f0
Author: D <[email protected]>
Date: 2019-09-27 (Fri, 27 Sep 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/PrintLOD.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/BitmapWriter.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PDFWriter.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PNGWriter.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PSWriter.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/SVGWriter.java
Log Message:
-----------
Merge remote-tracking branch 'origin/develop' into develop
Commit: 7e6bece46d9d97aaa56dcb13b237c4667ee8121c
https://github.com/cytoscape/cytoscape-impl/commit/7e6bece46d9d97aaa56dcb13b237c4667ee8121c
Author: Mike Kucera <[email protected]>
Date: 2019-09-30 (Mon, 30 Sep 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DEdgeDetails.java
Log Message:
-----------
Fix NPE when clearing edge bends.
Commit: 8a8c888fc2f4280f352108c1f64fb65429704402
https://github.com/cytoscape/cytoscape-impl/commit/8a8c888fc2f4280f352108c1f64fb65429704402
Author: Mike Kucera <[email protected]>
Date: 2019-09-30 (Mon, 30 Sep 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DEdgeDetails.java
Log Message:
-----------
Prevent exception when creating edge bend handle.
Commit: 2578fe54ea812842dc5c33e166a387cf5b7d030f
https://github.com/cytoscape/cytoscape-impl/commit/2578fe54ea812842dc5c33e166a387cf5b7d030f
Author: Mike Kucera <[email protected]>
Date: 2019-09-30 (Mon, 30 Sep 2019)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/CyActivator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/debug/DebugEntry.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/debug/DebugFrameType.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/debug/DingDebugPanel.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/CompositeImageCanvas.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/MainRenderComponent.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/RenderComponent.java
Log Message:
-----------
Re-enable animated edges.
Commit: ef3c13795c69b19e14a81686ec21e2c04105c14b
https://github.com/cytoscape/cytoscape-impl/commit/ef3c13795c69b19e14a81686ec21e2c04105c14b
Author: Mike Kucera <[email protected]>
Date: 2019-10-01 (Tue, 01 Oct 2019)
Changed paths:
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/If.java
Log Message:
-----------
CYTOSCAPE-10463 Return type of IF same as argument types.
Commit: 23d16c203d180925d20d053d53186b3f31bfec91
https://github.com/cytoscape/cytoscape-impl/commit/23d16c203d180925d20d053d53186b3f31bfec91
Author: Mike Kucera <[email protected]>
Date: 2019-10-01 (Tue, 01 Oct 2019)
Changed paths:
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/If.java
M
equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/IfTest.java
Log Message:
-----------
CYTOSCAPE-10463 Return type of IF same as argument types (fixed).
Commit: 9b516e5722d0e9aa3634f60bfbe45e47878b8f71
https://github.com/cytoscape/cytoscape-impl/commit/9b516e5722d0e9aa3634f60bfbe45e47878b8f71
Author: Mike Kucera <[email protected]>
Date: 2019-10-03 (Thu, 03 Oct 2019)
Changed paths:
M
core-task-impl/src/main/java/org/cytoscape/task/internal/export/ViewWriter.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/CyActivator.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/AbstractWriterManager.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/PresentationWriterManagerImpl.java
M
work-impl/src/main/java/org/cytoscape/work/internal/properties/BoundedPropertyHandler.java
Log Message:
-----------
CYTOSCAPE-11323 Save state of Network Image Export dialog.
Commit: 6d74bfbf717a9bb30f82a7e7cda65fceaffdb750
https://github.com/cytoscape/cytoscape-impl/commit/6d74bfbf717a9bb30f82a7e7cda65fceaffdb750
Author: Chris Churas <[email protected]>
Date: 2019-10-03 (Thu, 03 Oct 2019)
Changed paths:
M
core-task-impl/src/main/java/org/cytoscape/task/internal/export/ViewWriter.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/CyActivator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/PrintLOD.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/debug/DebugEntry.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/debug/DebugFrameType.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/debug/DingDebugPanel.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DEdgeDetails.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DRenderingEngine.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/CompositeImageCanvas.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/MainRenderComponent.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/canvas/RenderComponent.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/dialogs/ShapeAnnotationPanel.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/If.java
M
equations-impl/src/test/java/org/cytoscape/equations/internal/builtins/IfTest.java
M io-impl/impl/src/main/java/org/cytoscape/io/internal/CyActivator.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/AbstractWriterManager.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/PresentationWriterManagerImpl.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/BitmapWriter.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PDFWriter.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PNGWriter.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PSWriter.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/SVGWriter.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/PopupMenuHelper.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/NullCyNetworkViewImpl.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyNetworkViewImpl.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/CyViewBase.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/ViewLock.java
M
viewmodel-impl/impl/src/main/java/org/cytoscape/view/model/internal/model/snapshot/CyViewSnapshotBase.java
A
viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewBatchTest.java
M
viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewImplTest.java
M
viewmodel-impl/impl/src/test/java/org/cytoscape/view/model/NetworkViewTestUtils.java
M
work-impl/src/main/java/org/cytoscape/work/internal/properties/BoundedPropertyHandler.java
Log Message:
-----------
Merge branch 'develop' into csd-168
Commit: ce25deb64703a3046771d3c66f232a07a3086ed0
https://github.com/cytoscape/cytoscape-impl/commit/ce25deb64703a3046771d3c66f232a07a3086ed0
Author: Chris Churas <[email protected]>
Date: 2019-10-04 (Fri, 04 Oct 2019)
Changed paths:
M
search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchIndex.java
Log Message:
-----------
added real progress values for indexing step
Commit: 49d68587c1aa1e26527269220136aa6780c1f2f5
https://github.com/cytoscape/cytoscape-impl/commit/49d68587c1aa1e26527269220136aa6780c1f2f5
Author: Chris Churas <[email protected]>
Date: 2019-10-07 (Mon, 07 Oct 2019)
Changed paths:
M
search-impl/src/main/java/org/cytoscape/search/internal/IndexAndSearchTask.java
Log Message:
-----------
log the time it takes to update any views
Commit: 481a8700dfa0c6093de93de0c132a99525f6fe06
https://github.com/cytoscape/cytoscape-impl/commit/481a8700dfa0c6093de93de0c132a99525f6fe06
Author: Chris Churas <[email protected]>
Date: 2019-10-07 (Mon, 07 Oct 2019)
Changed paths:
M
search-impl/src/main/java/org/cytoscape/search/internal/NodeAndEdgeSelectorImpl.java
M
search-impl/src/test/java/org/cytoscape/search/internal/NodeAndEdgeSelectorImplTest.java
Log Message:
-----------
updated code to properly track progress of unsetting and setting node and
edge selection
Compare:
https://github.com/cytoscape/cytoscape-impl/compare/d124bf5c4501...481a8700dfa0
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