Branch: refs/heads/unstable
Home: https://github.com/PathwayCommons/factoid
Commit: 0eb5a30da7d2d83cea1094919f439343c6437625
https://github.com/PathwayCommons/factoid/commit/0eb5a30da7d2d83cea1094919f439343c6437625
Author: Max Franz <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
M package-lock.json
M package.json
Log Message:
-----------
0.5.0
Commit: 2b0f95904bdfc6b7db4566895e8334920620afcd
https://github.com/PathwayCommons/factoid/commit/2b0f95904bdfc6b7db4566895e8334920620afcd
Author: Jeffrey <[email protected]>
Date: 2019-06-11 (Tue, 11 Jun 2019)
Changed paths:
M Dockerfile
M README.md
M ci.sh
A docker/.env
A docker/backup_volumes.sh
A docker/docker-compose.yml
A docker/restore_volumes.sh
M package-lock.json
M package.json
M public/icon.svg
R src/client/components/debug-document-seeder.js
R src/client/components/debug.js
R src/client/components/demo-input.js
R src/client/components/document-renamer.js
M src/client/components/document-seeder-example.js
M src/client/components/document-seeder.js
R src/client/components/document-wizard-stepper.js
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/index.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
R src/client/components/example-document.js
M src/client/components/highlighter.js
M src/client/components/home.js
R src/client/components/interval-highlighter.js
M src/client/components/main-menu.js
R src/client/components/my-factoids.js
R src/client/components/organism-toggle.js
R src/client/components/reach-interval-highlighter.js
M src/client/components/tasks.js
M src/client/router.js
M src/config.js
M src/model/document/document.js
M src/model/element/entity.js
M src/model/element/interaction-type/binding.js
M src/model/element/interaction-type/interaction-type.js
M src/model/element/interaction-type/interaction.js
M src/model/element/interaction-type/modification.js
M src/model/element/interaction-type/transcription-translation.js
M src/model/organism.js
M src/server/email-transport.js
M src/server/index.js
A src/server/routes/api/document/filters.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/reach.js
M src/server/routes/api/element-association/aggregate.js
A src/server/routes/api/element-association/grounding-search.js
M src/server/routes/api/element-association/index.js
M src/styles/app.css
R src/styles/debug-document-seeder.css
R src/styles/debug.css
R src/styles/demo-input.css
R src/styles/document-view-chooser.css
R src/styles/document-wizard-stepper.css
M src/styles/editor/editor.css
R src/styles/example-document.css
M src/styles/help.css
M src/styles/home.css
R src/styles/image/author-workflow.svg
A src/styles/image/curve-menten.svg
R src/styles/image/form-option-preview.png
R src/styles/image/hero-splash-0.png
R src/styles/image/hero-splash-1.png
R src/styles/image/hero-splash.jpg
R src/styles/image/how-it-works-detailed.png
R src/styles/image/how-it-works.png
A src/styles/image/infographic-authors.svg
R src/styles/image/infographic-factoid.svg
R src/styles/image/logo-full.svg
R src/styles/image/logo-no-slogan.svg
M src/styles/image/logo.svg
M src/styles/index.css
M src/styles/main-menu.css
R src/styles/my-factoids.css
R src/styles/organism-toggle.css
M src/styles/popover/tippy.css
R src/styles/reach-interval-highlighter.css
M src/views/index.html
M test/document.js
M test/syncher.js
Log Message:
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Merge pull request #501 from PathwayCommons/0.5.0-release
0.5.0 release
Commit: 17d0a1ede47be0cb26a2650207088db0f58b7edf
https://github.com/PathwayCommons/factoid/commit/17d0a1ede47be0cb26a2650207088db0f58b7edf
Author: Max Franz <[email protected]>
Date: 2019-06-13 (Thu, 13 Jun 2019)
Changed paths:
M package-lock.json
M package.json
Log Message:
-----------
0.5.1
Commit: e87af79ab471ac974e1ac7986b498d6ca62e7d9e
https://github.com/PathwayCommons/factoid/commit/e87af79ab471ac974e1ac7986b498d6ca62e7d9e
Author: Max Franz <[email protected]>
Date: 2019-06-13 (Thu, 13 Jun 2019)
Changed paths:
M docker/.env
M docker/docker-compose.yml
Log Message:
-----------
Merge origin/unstable into 0.5.1-release
Commit: 388efb162444972a102bbf86201d2bb6b2c2b349
https://github.com/PathwayCommons/factoid/commit/388efb162444972a102bbf86201d2bb6b2c2b349
Author: Jeffrey <[email protected]>
Date: 2019-06-13 (Thu, 13 Jun 2019)
Changed paths:
M docker/.env
M docker/docker-compose.yml
M package-lock.json
M package.json
Log Message:
-----------
Merge pull request #503 from PathwayCommons/0.5.1-release
0.5.1 release
Commit: 45d83238ac51ffccc4f67d98b1a28684de436e45
https://github.com/PathwayCommons/factoid/commit/45d83238ac51ffccc4f67d98b1a28684de436e45
Author: Max Franz <[email protected]>
Date: 2020-01-09 (Thu, 09 Jan 2020)
Changed paths:
Log Message:
-----------
Merge branch 'merge-master-0.6.0' into unstable
Commit: a82288b0c42bf7e6bcd61b5b7a108ff390262155
https://github.com/PathwayCommons/factoid/commit/a82288b0c42bf7e6bcd61b5b7a108ff390262155
Author: Jeffrey <[email protected]>
Date: 2020-01-09 (Thu, 09 Jan 2020)
Changed paths:
M .eslintrc.json
M .nvmrc
M .stylelintrc.json
M .travis.yml
M Dockerfile
M README.md
M ci.sh
M docker/.env
A docker/Dockerfile-rethinkdb
R docker/backup_volumes.sh
A docker/cron-database-dump.sh
M docker/docker-compose.yml
A docker/dump_rethinkdb.sh
A docker/restore_rethinkdb.sh
R docker/restore_volumes.sh
A entrypoint.sh
M package-lock.json
M package.json
A private/res/banner-bottom-black.jpg
A private/res/banner.jpg
R private/res/icon.idraw
R private/res/icon.svg
A private/res/icon_biofactoid_circle.svg
A private/res/icon_biofactoid_filled.svg
A private/res/icon_biofactoid_outline.svg
R private/res/infographic-factoid.idraw
A private/res/logo-horizontal-with-text.svg
A private/res/logo-no-tagline.svg
A private/res/logos.pdf
A private/res/logos.svg
A private/res/shield_harvard.png
A private/res/shield_ohsu.png
A private/res/shield_uoft.png
R public/icon.png
R public/icon.svg
A src/client-env-vars.json
M src/client/client-util/file.js
M src/client/client-util/index.js
M src/client/components/animate.js
M src/client/components/copy-field.js
M src/client/components/data-component.js
M src/client/components/dirty-component.js
M src/client/components/document-linkout.js
A src/client/components/document-management-components.js
A src/client/components/document-management.js
M src/client/components/document-seeder-example.js
M src/client/components/document-seeder.js
M src/client/components/editor/buttons.js
M src/client/components/editor/cy/automove.js
A src/client/components/editor/cy/compound-dnd.js
M src/client/components/editor/cy/cxtmenu.js
M src/client/components/editor/cy/defs.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/edgehandles.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/layout.js
M src/client/components/editor/cy/on-key.js
M src/client/components/editor/cy/stylesheet.js
M src/client/components/editor/cy/tippy.js
M src/client/components/editor/cy/viewport.js
M src/client/components/editor/defs.js
R src/client/components/editor/help.js
M src/client/components/editor/index.js
M src/client/components/editor/undo-remove.js
M src/client/components/element-info/chemical-formula.js
M src/client/components/element-info/element-info.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/element-info/participant-info.js
M src/client/components/element-info/progression-stepper.js
M src/client/components/element-info/progression.js
R src/client/components/form-editor/entity-form.js
R src/client/components/form-editor/index.js
R src/client/components/form-editor/interaction-form.js
M src/client/components/highlighter.js
M src/client/components/home.js
M src/client/components/main-menu.js
M src/client/components/notification/base.js
M src/client/components/notification/corner.js
M src/client/components/notification/index.js
M src/client/components/notification/inline.js
M src/client/components/notification/list.js
M src/client/components/notification/notification.js
M src/client/components/notification/panel.js
M src/client/components/notification/popover.js
M src/client/components/page-not-found.js
M src/client/components/popover/popover.js
M src/client/components/popover/tooltip.js
A src/client/components/share.js
R src/client/components/tasks.js
M src/client/components/toggle.js
M src/client/debug.js
M src/client/defs.js
M src/client/index.js
M src/client/logger.js
M src/client/polyfills.js
M src/client/router.js
M src/config.js
M src/model/document/document.js
M src/model/document/index.js
M src/model/element-cache.js
M src/model/element-set.js
A src/model/element/complex.js
M src/model/element/element-type.js
M src/model/element/element.js
M src/model/element/entity-type.js
M src/model/element/entity.js
M src/model/element/factory.js
M src/model/element/index.js
M src/model/element/interaction-type/binding.js
M src/model/element/interaction-type/biopax-type.js
M src/model/element/interaction-type/demethylation.js
M src/model/element/interaction-type/dephosphorylation.js
M src/model/element/interaction-type/deubiquitination.js
M src/model/element/interaction-type/enum.js
M src/model/element/interaction-type/index.js
M src/model/element/interaction-type/interaction-type.js
M src/model/element/interaction-type/interaction.js
M src/model/element/interaction-type/methylation.js
M src/model/element/interaction-type/modification.js
M src/model/element/interaction-type/phosphorylation.js
M src/model/element/interaction-type/transcription-translation.js
M src/model/element/interaction-type/ubiquitination.js
M src/model/element/interaction.js
M src/model/element/participant-type.js
M src/model/empty-element-cache.js
M src/model/event-emitter-mixin.js
M src/model/organism.js
M src/model/syncher.js
M src/server/db.js
M src/server/email-transport.js
M src/server/index.js
M src/server/logger.js
M src/server/routes/api/document/filters.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/null.js
A src/server/routes/api/document/pubmed/demoPubmedArticle.js
A src/server/routes/api/document/pubmed/fetchPubmed.js
A src/server/routes/api/document/pubmed/index.js
A src/server/routes/api/document/pubmed/searchPubmed.js
M src/server/routes/api/document/reach.js
R src/server/routes/api/element-association/aggregate.js
R src/server/routes/api/element-association/chebi.js
M src/server/routes/api/element-association/grounding-search.js
M src/server/routes/api/element-association/index.js
M src/server/routes/api/element-association/pc.js
R src/server/routes/api/element-association/pubchem.js
R src/server/routes/api/element-association/search-string-conversion.js
R src/server/routes/api/element-association/uniprot.js
M src/server/routes/api/index.js
M src/server/routes/index.js
M src/server/routes/socket.io.js
M src/server/routes/style-demo.js
M src/styles/base.css
M src/styles/custom-icons.css
A src/styles/document-management.css
R src/styles/document-renamer.css
M src/styles/editor/editor.css
M src/styles/editor/undo-remove.css
M src/styles/element-info/entity-info.css
M src/styles/element-info/interaction-info.css
M src/styles/help.css
M src/styles/home.css
A src/styles/image/banner.jpg
A src/styles/image/card-banner.jpg
R src/styles/image/curve-menten.svg
A src/styles/image/example-doc-1.png
A src/styles/image/example-doc-2.png
A src/styles/image/home-figure-1.jpg
A src/styles/image/home-figure-2.jpg
A src/styles/image/home-figure-3.jpg
A src/styles/image/icon-twitter-white.svg
A src/styles/image/icon-twitter.svg
R src/styles/image/infographic-authors.svg
A src/styles/image/logo-horizontal-no-text.svg
A src/styles/image/logo-horizontal-text-only-white.svg
A src/styles/image/logo-horizontal-text-only-yellow.svg
A src/styles/image/logo-horizontal-text-only.svg
A src/styles/image/logo-horizontal-with-text.svg
A src/styles/image/logo-no-circle.svg
A src/styles/image/logo.png
M src/styles/image/logo.svg
A src/styles/image/mol-cell-logo.svg
R src/styles/image/network-option-preview.png
R src/styles/image/steps-figure.svg
A src/styles/image/uni-logos.png
A src/styles/image/welcome-aboard-1.svg
A src/styles/image/welcome-aboard-2.svg
A src/styles/image/welcome-aboard-3.svg
R src/styles/image/workflow-detailed.svg
M src/styles/index.css
M src/styles/main-menu.css
A src/styles/share.css
R src/styles/tasks.css
M src/styles/vars.css
M src/util/assert.js
M src/util/cache.js
M src/util/cy.js
M src/util/dom.js
A src/util/email.js
M src/util/index.js
M src/util/is.js
M src/util/memoize.js
M src/util/obj.js
M src/util/promise.js
A src/util/pubmed.js
M src/util/strings.js
R src/views/index.html
A src/views/index.html.ejs
M test/document.js
M test/element.js
M test/entity.js
M test/interaction.js
M test/mock/cache.js
M test/mock/socket.js
A test/pubmed/fetchPubmed.js
A test/pubmed/pmid_29440426.xml
A test/pubmed/pmid_30078747.xml
A test/pubmed/pmid_30115697.xml
A test/pubmed/pmid_31511694.xml
A test/pubmed/pmid_9417067.xml
A test/pubmed/searchPubmed.js
A test/pubmed/searchPubmedData.js
M test/syncher.js
M test/util/conf.js
M test/util/socket-io.js
M test/util/table.js
M test/util/when.js
M webpack.config.js
Log Message:
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Merge pull request #608 from PathwayCommons/merge-master-0.6.0
Merge unstable into master for 0.6.0
Commit: 868bc81496bbbe29f909553868fe39bcbb0cf0f4
https://github.com/PathwayCommons/factoid/commit/868bc81496bbbe29f909553868fe39bcbb0cf0f4
Author: Max Franz <[email protected]>
Date: 2020-02-25 (Tue, 25 Feb 2020)
Changed paths:
M src/client/components/home.js
Log Message:
-----------
lint
Commit: 5b001c07688994868c12085d0bbea521837fbb5b
https://github.com/PathwayCommons/factoid/commit/5b001c07688994868c12085d0bbea521837fbb5b
Author: Max Franz <[email protected]>
Date: 2020-02-25 (Tue, 25 Feb 2020)
Changed paths:
M package-lock.json
M package.json
Log Message:
-----------
0.7.0
Commit: 8d1ed98c5eb1eb1182c09258ee635cf516c491a2
https://github.com/PathwayCommons/factoid/commit/8d1ed98c5eb1eb1182c09258ee635cf516c491a2
Author: Jeffrey <[email protected]>
Date: 2020-02-25 (Tue, 25 Feb 2020)
Changed paths:
M README.md
M package-lock.json
M package.json
M src/client/components/document-management-components.js
M src/client/components/document-management.js
M src/client/components/editor/index.js
M src/client/components/home.js
A src/client/components/tasks.js
M src/config.js
M src/model/document/document.js
M src/server/index.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/pubmed/fetchPubmed.js
M src/server/routes/api/document/pubmed/index.js
M src/server/routes/api/document/pubmed/searchPubmed.js
M src/server/routes/index.js
M src/styles/animations.css
M src/styles/base.css
M src/styles/document-management.css
M src/styles/editor/editor.css
M src/styles/help.css
M src/styles/home.css
M src/styles/image/banner.jpg
M src/styles/image/home-figure-1.jpg
A src/styles/image/logo-horizontal-name-only-white.svg
A src/styles/image/uni-logos-bw.png
M src/styles/image/welcome-aboard-3.svg
A src/styles/image/welcome-aboard-4.svg
M src/styles/index.css
A src/styles/tasks.css
M src/util/email.js
M src/util/pubmed.js
A src/views/404.ejs
R src/views/404.html
M test/pubmed/fetchPubmed.js
Log Message:
-----------
Merge pull request #644 from PathwayCommons/v0.7.0-release
V0.7.0 release
Commit: f7b1d4cf02b2e9f89946a00595c0541e6c8a19d5
https://github.com/PathwayCommons/factoid/commit/f7b1d4cf02b2e9f89946a00595c0541e6c8a19d5
Author: Max Franz <[email protected]>
Date: 2020-03-26 (Thu, 26 Mar 2020)
Changed paths:
Log Message:
-----------
Merge unstable and master together for 0.8.0
Ref : Tag & release 0.8.0: patch release for next steps with Mol. Cell #695
Merge branch 'master' into unstable
git merge -s ours master
Compare:
https://github.com/PathwayCommons/factoid/compare/eabe3be3fc43...f7b1d4cf02b2
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