Branch: refs/heads/iss753_homepage-tweaks-text
Home: https://github.com/PathwayCommons/factoid
Commit: 999f3965c0f7f343fd1e15b5351f330dda13136a
https://github.com/PathwayCommons/factoid/commit/999f3965c0f7f343fd1e15b5351f330dda13136a
Author: metincansiper <[email protected]>
Date: 2020-06-11 (Thu, 11 Jun 2020)
Changed paths:
M src/config.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/indra.js
Log Message:
-----------
Related Papers: Search aborts when (PubMed) metadata is missing #738
Commit: 92b6380043093126fb0cd82a82ea3c7143e9dc04
https://github.com/PathwayCommons/factoid/commit/92b6380043093126fb0cd82a82ea3c7143e9dc04
Author: metincansiper <[email protected]>
Date: 2020-06-12 (Fri, 12 Jun 2020)
Changed paths:
M src/server/routes/api/document/indra.js
Log Message:
-----------
Safer implementation for retrieving pmid for a document #752
Commit: 24fd003c5029adf536703dc4c628e749835676c2
https://github.com/PathwayCommons/factoid/commit/24fd003c5029adf536703dc4c628e749835676c2
Author: metincansiper <[email protected]>
Date: 2020-06-16 (Tue, 16 Jun 2020)
Changed paths:
M src/server/routes/api/document/indra.js
Log Message:
-----------
Resolved merge conflicts for #752
Commit: 8db3df102d3d12276470b841cce869e88c15c4b4
https://github.com/PathwayCommons/factoid/commit/8db3df102d3d12276470b841cce869e88c15c4b4
Author: Jeffrey <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
M src/config.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/indra.js
Log Message:
-----------
Merge pull request #752 from PathwayCommons/no_abstract_handling
Related Papers: Search aborts when (PubMed) metadata is missing
Commit: 58b97a476bc40afb2a670edac55f3d1603ebee05
https://github.com/PathwayCommons/factoid/commit/58b97a476bc40afb2a670edac55f3d1603ebee05
Author: Max Franz <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
A src/client/components/carousel.js
M src/client/components/editor/cy/defs.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/tippy.js
M src/client/components/editor/defs.js
M src/client/components/editor/explore-share.js
M src/client/components/editor/index.js
M src/client/components/editor/info-panel.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/home.js
A src/client/components/related-papers.js
M src/model/element/element.js
M src/model/element/interaction.js
M src/styles/base.css
A src/styles/carousel.css
M src/styles/editor/editor.css
M src/styles/element-info/element-info.css
M src/styles/element-info/entity-info.css
M src/styles/element-info/index.css
M src/styles/element-info/interaction-info.css
M src/styles/home.css
M src/styles/index.css
A src/styles/related-papers.css
Log Message:
-----------
Related papers UI
- Adds related papers UI, labelled as "recommended articles", for the document,
each interaction, and each entity.
- Revises the carousel component to be generic. The carousel is an alternative
way to show the related papers that allows for showing more papers with
horizontal scrolling. This design can be swapped out in future, as needed.
- The information panel in the explore view always sits at the bottom of the
page, regardless of screen size.
- Large screens allow the related papers to be shown above the fold, by using a
two-column layout.
- Misc. fixes & improvements
- The information panel can be scrolled by scrolling over the network
visualisation.
- Improved entity information display in the explore view: It now reuses the
information panel rather than showing Tippy components.
- The use of Tippy components has been revised to address #736: Grounding:
Cannot 'Select better match for X'
- The `relatedPapers` method has been moved to the `Element` superclass to
support both `Entity`s and `Interaction`s. See
https://github.com/PathwayCommons/factoid/issues/742#issuecomment-644228132
- New nodes are always added around the same position to allow for more
consistency and to allow for a better experience on small screen sizes. (You
need the text box in the popover to be shown near the top of the screen.)
- Many gestures have been disabled in the visualisation of the explore view.
- There is a button in the explore view to access the corresponding tweet.
- And other minor usability improvements...
Commit: f6a7113f365d5c90eef65c1d7cb57e613f884698
https://github.com/PathwayCommons/factoid/commit/f6a7113f365d5c90eef65c1d7cb57e613f884698
Author: Max Franz <[email protected]>
Date: 2020-06-18 (Thu, 18 Jun 2020)
Changed paths:
M src/styles/editor/editor.css
Log Message:
-----------
Fixes twitter icon alignment in firefox
Commit: 9da3808f0bb62fe3c129d311147f11424d867c6d
https://github.com/PathwayCommons/factoid/commit/9da3808f0bb62fe3c129d311147f11424d867c6d
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-19 (Fri, 19 Jun 2020)
Changed paths:
M src/client/components/editor/info-panel.js
M src/client/components/related-papers.js
M src/server/routes/api/document/indra.js
M src/util/pubmed.js
Log Message:
-----------
- Show doc text when Abstract unavailable
- Related papers uses live data
- Document stores citation of article
Commit: 7d0085775eef86116c62709fa478377d08dc2593
https://github.com/PathwayCommons/factoid/commit/7d0085775eef86116c62709fa478377d08dc2593
Author: Max Franz <[email protected]>
Date: 2020-06-19 (Fri, 19 Jun 2020)
Changed paths:
A src/client/components/carousel.js
M src/client/components/editor/cy/defs.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/tippy.js
M src/client/components/editor/defs.js
M src/client/components/editor/explore-share.js
M src/client/components/editor/index.js
M src/client/components/editor/info-panel.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/home.js
A src/client/components/related-papers.js
M src/model/element/element.js
M src/model/element/interaction.js
M src/server/routes/api/document/indra.js
M src/styles/base.css
A src/styles/carousel.css
M src/styles/editor/editor.css
M src/styles/element-info/element-info.css
M src/styles/element-info/entity-info.css
M src/styles/element-info/index.css
M src/styles/element-info/interaction-info.css
M src/styles/home.css
M src/styles/index.css
A src/styles/related-papers.css
M src/util/pubmed.js
Log Message:
-----------
Merge pull request #755 from PathwayCommons/related-papers-ui
Related papers UI
Commit: f42bf0fac64114cb28a518eee922b6f2ed492514
https://github.com/PathwayCommons/factoid/commit/f42bf0fac64114cb28a518eee922b6f2ed492514
Author: Max Franz <[email protected]>
Date: 2020-06-19 (Fri, 19 Jun 2020)
Changed paths:
A src/client/components/carousel.js
M src/client/components/editor/cy/defs.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/tippy.js
M src/client/components/editor/defs.js
M src/client/components/editor/explore-share.js
M src/client/components/editor/index.js
M src/client/components/editor/info-panel.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/home.js
A src/client/components/related-papers.js
M src/config.js
M src/model/element/element.js
M src/model/element/interaction.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/indra.js
M src/styles/base.css
A src/styles/carousel.css
M src/styles/editor/editor.css
M src/styles/element-info/element-info.css
M src/styles/element-info/entity-info.css
M src/styles/element-info/index.css
M src/styles/element-info/interaction-info.css
M src/styles/home.css
M src/styles/index.css
A src/styles/related-papers.css
M src/util/pubmed.js
Log Message:
-----------
Merge branch 'unstable' into iss753_homepage-tweaks-text
Compare:
https://github.com/PathwayCommons/factoid/compare/f8fe8893d460...f42bf0fac641
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