Branch: refs/heads/bp_additional_attr
Home: https://github.com/PathwayCommons/factoid
Commit: 9d2c59fbf6ae14e6c33305d7d865db1fe92a7f1c
https://github.com/PathwayCommons/factoid/commit/9d2c59fbf6ae14e6c33305d7d865db1fe92a7f1c
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-01 (Mon, 01 Jun 2020)
Changed paths:
M docker/.env
M docker/docker-compose.yml
Log Message:
-----------
- Default Factoid image tag to be 'latest' rather than 'unstable'
- Publish the port for semantic-search, in anticipation of mapping it to a
domain
Commit: 7435380cb13b1da31ec8d73f116f981d057a3c81
https://github.com/PathwayCommons/factoid/commit/7435380cb13b1da31ec8d73f116f981d057a3c81
Author: Jeffrey <[email protected]>
Date: 2020-06-01 (Mon, 01 Jun 2020)
Changed paths:
M docker/.env
M docker/docker-compose.yml
Log Message:
-----------
Merge pull request #739 from PathwayCommons/docker-compose-tweaks
Docker-compose updates
Commit: 1bffc331218fd43eb525830bd00da7fa69cebcf8
https://github.com/PathwayCommons/factoid/commit/1bffc331218fd43eb525830bd00da7fa69cebcf8
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-02 (Tue, 02 Jun 2020)
Changed paths:
M src/config.js
Log Message:
-----------
Config var for semantic-search service.
Commit: 7e4f99d85c5134310491c60229abb432b0dd4c7e
https://github.com/PathwayCommons/factoid/commit/7e4f99d85c5134310491c60229abb432b0dd4c7e
Author: Jeffrey <[email protected]>
Date: 2020-06-02 (Tue, 02 Jun 2020)
Changed paths:
M src/config.js
Log Message:
-----------
Merge pull request #740 from PathwayCommons/semantic-search-URL
Config var for semantic-search service.
Commit: 8f477774b67b1e36bb15b620fa12a07a10d1f20f
https://github.com/PathwayCommons/factoid/commit/8f477774b67b1e36bb15b620fa12a07a10d1f20f
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-02 (Tue, 02 Jun 2020)
Changed paths:
M docker/docker-compose.yml
Log Message:
-----------
Missing space in docker-compose
Commit: 1a00d1f10fa7e55c2cf7d2da1d7ac1ea25e9358a
https://github.com/PathwayCommons/factoid/commit/1a00d1f10fa7e55c2cf7d2da1d7ac1ea25e9358a
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-04 (Thu, 04 Jun 2020)
Changed paths:
M src/client/components/editor/index.js
M src/client/components/tasks.js
M src/server/routes/api/document/index.js
Log Message:
-----------
- added missing 'await' on `tweetDoc()`
- TaskView waits for server response to show done panel
Commit: ba89393473f0333c10c72a4fa9af3e95b586a729
https://github.com/PathwayCommons/factoid/commit/ba89393473f0333c10c72a4fa9af3e95b586a729
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-04 (Thu, 04 Jun 2020)
Changed paths:
M src/client/components/tasks.js
Log Message:
-----------
Remove unused json conversion in status update response
Commit: 5503dbfb2311074dcdafb418c1668ba75725e86a
https://github.com/PathwayCommons/factoid/commit/5503dbfb2311074dcdafb418c1668ba75725e86a
Author: Jeffrey <[email protected]>
Date: 2020-06-09 (Tue, 09 Jun 2020)
Changed paths:
M src/client/components/editor/index.js
M src/client/components/tasks.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Merge pull request #744 from PathwayCommons/iss743_submit-wait-server
Submit: Wait for server response before showing 'done' panel
Commit: 00846d488294d13d2ed79ba51c43d08a2580132f
https://github.com/PathwayCommons/factoid/commit/00846d488294d13d2ed79ba51c43d08a2580132f
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-09 (Tue, 09 Jun 2020)
Changed paths:
M package-lock.json
M package.json
M src/server/routes/api/document/pubmed/fetchPubmed.js
M test/pubmed/fetchPubmed.js
A test/pubmed/pmid_151222.xml
Log Message:
-----------
- New PubMed test file with MedlineDate
- Removed xml2js from packages
- Updated fetchPubMed tests
- Implemented fetchPubMed with xml-js library
Commit: 876bbf248faf7ce65f367288e795eaa2ed2db00d
https://github.com/PathwayCommons/factoid/commit/876bbf248faf7ce65f367288e795eaa2ed2db00d
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-09 (Tue, 09 Jun 2020)
Changed paths:
M src/server/routes/api/document/pubmed/fetchPubmed.js
M test/pubmed/fetchPubmed.js
Log Message:
-----------
- Fixing bug in description of Chemical properties
Commit: 2ead7b8ef3cc1cad68019c1c3a351a4e148a71c2
https://github.com/PathwayCommons/factoid/commit/2ead7b8ef3cc1cad68019c1c3a351a4e148a71c2
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-10 (Wed, 10 Jun 2020)
Changed paths:
M src/server/routes/api/document/index.js
Log Message:
-----------
Log errors from fillDoc, which catches errors in underlying modules (e.g.
fetchPubmed)
Commit: 4ce085bc576fd756517d268671ee3cd0e2971f0e
https://github.com/PathwayCommons/factoid/commit/4ce085bc576fd756517d268671ee3cd0e2971f0e
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-10 (Wed, 10 Jun 2020)
Changed paths:
M src/server/routes/api/document/pubmed/fetchPubmed.js
Log Message:
-----------
Support Abstract Labels for structured abstracts.
Commit: 9ac54afc247e6c6b5993e28da1d7e5beeb597d9f
https://github.com/PathwayCommons/factoid/commit/9ac54afc247e6c6b5993e28da1d7e5beeb597d9f
Author: Max Franz <[email protected]>
Date: 2020-06-10 (Wed, 10 Jun 2020)
Changed paths:
M .travis.yml
Log Message:
-----------
Disable rethinkdb in travis & use only node@10,12
Commit: fceefd5077d7a5ad32a9e9152386461179492282
https://github.com/PathwayCommons/factoid/commit/fceefd5077d7a5ad32a9e9152386461179492282
Author: Jeffrey <[email protected]>
Date: 2020-06-10 (Wed, 10 Jun 2020)
Changed paths:
M package-lock.json
M package.json
M src/server/routes/api/document/index.js
M src/server/routes/api/document/pubmed/fetchPubmed.js
M test/pubmed/fetchPubmed.js
A test/pubmed/pmid_151222.xml
Log Message:
-----------
Merge pull request #748 from PathwayCommons/iss745_xml-parsing-fetchPubmed
Import of PubMed EFETCH XML
Commit: a5b67235c2c6402dfdf748e68eda758a8c15422a
https://github.com/PathwayCommons/factoid/commit/a5b67235c2c6402dfdf748e68eda758a8c15422a
Author: Jeffrey <[email protected]>
Date: 2020-06-10 (Wed, 10 Jun 2020)
Changed paths:
M .travis.yml
Log Message:
-----------
Merge pull request #749 from PathwayCommons/erratic-travis
Disable rethinkdb in travis & use only node@10,12
Commit: 08cc57bdbe30b947fab696b6820783e6ea008c3b
https://github.com/PathwayCommons/factoid/commit/08cc57bdbe30b947fab696b6820783e6ea008c3b
Author: metincansiper <[email protected]>
Date: 2020-06-10 (Wed, 10 Jun 2020)
Changed paths:
M src/server/routes/api/document/indra.js
Log Message:
-----------
No related papers results #742
Commit: fa6325b672b6863adf82287c5b981b8db4a56c14
https://github.com/PathwayCommons/factoid/commit/fa6325b672b6863adf82287c5b981b8db4a56c14
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-11 (Thu, 11 Jun 2020)
Changed paths:
M src/client/components/editor/index.js
M src/client/components/tasks.js
M src/server/routes/api/document/index.js
Log Message:
-----------
- Editor is sole source of truth for doc status
- Task submit, publish path is simplified
- DO not check status on server to attempt publish
Commit: 143ba5440806a0ba953bc824a713a1687ded48e6
https://github.com/PathwayCommons/factoid/commit/143ba5440806a0ba953bc824a713a1687ded48e6
Author: Jeffrey <[email protected]>
Date: 2020-06-11 (Thu, 11 Jun 2020)
Changed paths:
M src/client/components/editor/index.js
M src/client/components/tasks.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Merge pull request #751 from PathwayCommons/iss743_submit-success-sync
Editor submit & success panel
Commit: c3590ddfa0ad86270d16863968e431769b22c07a
https://github.com/PathwayCommons/factoid/commit/c3590ddfa0ad86270d16863968e431769b22c07a
Author: metincansiper <[email protected]>
Date: 2020-06-11 (Thu, 11 Jun 2020)
Changed paths:
M src/server/routes/api/document/indra.js
Log Message:
-----------
Catch unhandled dates and return the minimum possible integers while
calculating the publication time in ms in such cases #742
Commit: 999f3965c0f7f343fd1e15b5351f330dda13136a
https://github.com/PathwayCommons/factoid/commit/999f3965c0f7f343fd1e15b5351f330dda13136a
Author: metincansiper <[email protected]>
Date: 2020-06-11 (Thu, 11 Jun 2020)
Changed paths:
M src/config.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/indra.js
Log Message:
-----------
Related Papers: Search aborts when (PubMed) metadata is missing #738
Commit: b3a08c18a40894581fef3f7ff6670e29c3f14e4a
https://github.com/PathwayCommons/factoid/commit/b3a08c18a40894581fef3f7ff6670e29c3f14e4a
Author: Jeffrey <[email protected]>
Date: 2020-06-12 (Fri, 12 Jun 2020)
Changed paths:
M src/server/routes/api/document/indra.js
Log Message:
-----------
Merge pull request #750 from PathwayCommons/related_papers_filter
No related papers results #742
Commit: 92b6380043093126fb0cd82a82ea3c7143e9dc04
https://github.com/PathwayCommons/factoid/commit/92b6380043093126fb0cd82a82ea3c7143e9dc04
Author: metincansiper <[email protected]>
Date: 2020-06-12 (Fri, 12 Jun 2020)
Changed paths:
M src/server/routes/api/document/indra.js
Log Message:
-----------
Safer implementation for retrieving pmid for a document #752
Commit: df54b243498f40ef174101a1b1d491d9e0c3fb92
https://github.com/PathwayCommons/factoid/commit/df54b243498f40ef174101a1b1d491d9e0c3fb92
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-16 (Tue, 16 Jun 2020)
Changed paths:
M src/client-env-vars.json
M src/client/components/home.js
M src/config.js
Log Message:
-----------
Text only updates
Commit: 24fd003c5029adf536703dc4c628e749835676c2
https://github.com/PathwayCommons/factoid/commit/24fd003c5029adf536703dc4c628e749835676c2
Author: metincansiper <[email protected]>
Date: 2020-06-16 (Tue, 16 Jun 2020)
Changed paths:
M src/server/routes/api/document/indra.js
Log Message:
-----------
Resolved merge conflicts for #752
Commit: fff46345a3b1af60517a1e12cfbc839752eec2eb
https://github.com/PathwayCommons/factoid/commit/fff46345a3b1af60517a1e12cfbc839752eec2eb
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
M src/client/components/home.js
M src/config.js
Log Message:
-----------
Tweaking the email disclaimer.
Commit: 12b09f1e004be42cea20f9bb4bcdfd7d87f36252
https://github.com/PathwayCommons/factoid/commit/12b09f1e004be42cea20f9bb4bcdfd7d87f36252
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
M src/styles/home.css
M src/styles/image/home-figure-fg-2.png
Log Message:
-----------
Updated section 3 figure.
Commit: 7b3ddb83e089b3ce050ad9bafb6c0e3ff63870eb
https://github.com/PathwayCommons/factoid/commit/7b3ddb83e089b3ce050ad9bafb6c0e3ff63870eb
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
M src/client/components/home.js
M src/styles/home.css
A src/styles/image/logo_harvardu.png
A src/styles/image/logo_ohsu.jpg
A src/styles/image/logo_utoronto.png
R src/styles/image/uni-logos-bw.png
R src/styles/image/uni-logos.png
Log Message:
-----------
Individual images for universities and linkouts
Commit: ceeba37e6e4240d8f3ae0c7d21dc4421faf47113
https://github.com/PathwayCommons/factoid/commit/ceeba37e6e4240d8f3ae0c7d21dc4421faf47113
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
M src/styles/home.css
Log Message:
-----------
Section 3: Reduce the size of image and flip background
Commit: fbb2a0b5796194caa25e85eddfa8b159a5b7d111
https://github.com/PathwayCommons/factoid/commit/fbb2a0b5796194caa25e85eddfa8b159a5b7d111
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
M src/client/components/home.js
Log Message:
-----------
Appended grant information to the Contact.
Commit: f8fe8893d460a32c89dc858bb33e7770c254130d
https://github.com/PathwayCommons/factoid/commit/f8fe8893d460a32c89dc858bb33e7770c254130d
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
M src/client/components/home.js
Log Message:
-----------
Shorten the 'publish' popup text.
Commit: 8db3df102d3d12276470b841cce869e88c15c4b4
https://github.com/PathwayCommons/factoid/commit/8db3df102d3d12276470b841cce869e88c15c4b4
Author: Jeffrey <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
M src/config.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/indra.js
Log Message:
-----------
Merge pull request #752 from PathwayCommons/no_abstract_handling
Related Papers: Search aborts when (PubMed) metadata is missing
Commit: 9be604f875f5fc9c5ec2cb60a07c820d0a087fce
https://github.com/PathwayCommons/factoid/commit/9be604f875f5fc9c5ec2cb60a07c820d0a087fce
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
M src/server/routes/api/document/pubmed/index.js
M src/server/routes/api/document/pubmed/searchPubmed.js
Log Message:
-----------
- Add opts for searchPubmed
- getPubmedArticle explicitly searches for DOI, PMID or title.
Commit: b4b0a27f0ea2d726e4e1a1c4c26d090b326ced5f
https://github.com/PathwayCommons/factoid/commit/b4b0a27f0ea2d726e4e1a1c4c26d090b326ced5f
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
M src/server/routes/api/document/pubmed/index.js
Log Message:
-----------
Comment on need to sanitize titles.
Commit: 4c4158aff9a0ab6e04e033c6279584993dbfbc46
https://github.com/PathwayCommons/factoid/commit/4c4158aff9a0ab6e04e033c6279584993dbfbc46
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
M src/server/routes/api/document/pubmed/index.js
Log Message:
-----------
When comparing titles, just eliminate any non word characters.
Commit: 58b97a476bc40afb2a670edac55f3d1603ebee05
https://github.com/PathwayCommons/factoid/commit/58b97a476bc40afb2a670edac55f3d1603ebee05
Author: Max Franz <[email protected]>
Date: 2020-06-17 (Wed, 17 Jun 2020)
Changed paths:
A src/client/components/carousel.js
M src/client/components/editor/cy/defs.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/tippy.js
M src/client/components/editor/defs.js
M src/client/components/editor/explore-share.js
M src/client/components/editor/index.js
M src/client/components/editor/info-panel.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/home.js
A src/client/components/related-papers.js
M src/model/element/element.js
M src/model/element/interaction.js
M src/styles/base.css
A src/styles/carousel.css
M src/styles/editor/editor.css
M src/styles/element-info/element-info.css
M src/styles/element-info/entity-info.css
M src/styles/element-info/index.css
M src/styles/element-info/interaction-info.css
M src/styles/home.css
M src/styles/index.css
A src/styles/related-papers.css
Log Message:
-----------
Related papers UI
- Adds related papers UI, labelled as "recommended articles", for the document,
each interaction, and each entity.
- Revises the carousel component to be generic. The carousel is an alternative
way to show the related papers that allows for showing more papers with
horizontal scrolling. This design can be swapped out in future, as needed.
- The information panel in the explore view always sits at the bottom of the
page, regardless of screen size.
- Large screens allow the related papers to be shown above the fold, by using a
two-column layout.
- Misc. fixes & improvements
- The information panel can be scrolled by scrolling over the network
visualisation.
- Improved entity information display in the explore view: It now reuses the
information panel rather than showing Tippy components.
- The use of Tippy components has been revised to address #736: Grounding:
Cannot 'Select better match for X'
- The `relatedPapers` method has been moved to the `Element` superclass to
support both `Entity`s and `Interaction`s. See
https://github.com/PathwayCommons/factoid/issues/742#issuecomment-644228132
- New nodes are always added around the same position to allow for more
consistency and to allow for a better experience on small screen sizes. (You
need the text box in the popover to be shown near the top of the screen.)
- Many gestures have been disabled in the visualisation of the explore view.
- There is a button in the explore view to access the corresponding tweet.
- And other minor usability improvements...
Commit: cbb4bf3238a56e077a3a4a5ba2edeab7cd290220
https://github.com/PathwayCommons/factoid/commit/cbb4bf3238a56e077a3a4a5ba2edeab7cd290220
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-18 (Thu, 18 Jun 2020)
Changed paths:
M src/server/routes/api/document/pubmed/index.js
Log Message:
-----------
Removed extraineous check on searchHit counts from PubMed.
Commit: f6a7113f365d5c90eef65c1d7cb57e613f884698
https://github.com/PathwayCommons/factoid/commit/f6a7113f365d5c90eef65c1d7cb57e613f884698
Author: Max Franz <[email protected]>
Date: 2020-06-18 (Thu, 18 Jun 2020)
Changed paths:
M src/styles/editor/editor.css
Log Message:
-----------
Fixes twitter icon alignment in firefox
Commit: 9da3808f0bb62fe3c129d311147f11424d867c6d
https://github.com/PathwayCommons/factoid/commit/9da3808f0bb62fe3c129d311147f11424d867c6d
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-19 (Fri, 19 Jun 2020)
Changed paths:
M src/client/components/editor/info-panel.js
M src/client/components/related-papers.js
M src/server/routes/api/document/indra.js
M src/util/pubmed.js
Log Message:
-----------
- Show doc text when Abstract unavailable
- Related papers uses live data
- Document stores citation of article
Commit: 7d0085775eef86116c62709fa478377d08dc2593
https://github.com/PathwayCommons/factoid/commit/7d0085775eef86116c62709fa478377d08dc2593
Author: Max Franz <[email protected]>
Date: 2020-06-19 (Fri, 19 Jun 2020)
Changed paths:
A src/client/components/carousel.js
M src/client/components/editor/cy/defs.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/tippy.js
M src/client/components/editor/defs.js
M src/client/components/editor/explore-share.js
M src/client/components/editor/index.js
M src/client/components/editor/info-panel.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/home.js
A src/client/components/related-papers.js
M src/model/element/element.js
M src/model/element/interaction.js
M src/server/routes/api/document/indra.js
M src/styles/base.css
A src/styles/carousel.css
M src/styles/editor/editor.css
M src/styles/element-info/element-info.css
M src/styles/element-info/entity-info.css
M src/styles/element-info/index.css
M src/styles/element-info/interaction-info.css
M src/styles/home.css
M src/styles/index.css
A src/styles/related-papers.css
M src/util/pubmed.js
Log Message:
-----------
Merge pull request #755 from PathwayCommons/related-papers-ui
Related papers UI
Commit: f42bf0fac64114cb28a518eee922b6f2ed492514
https://github.com/PathwayCommons/factoid/commit/f42bf0fac64114cb28a518eee922b6f2ed492514
Author: Max Franz <[email protected]>
Date: 2020-06-19 (Fri, 19 Jun 2020)
Changed paths:
A src/client/components/carousel.js
M src/client/components/editor/cy/defs.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/tippy.js
M src/client/components/editor/defs.js
M src/client/components/editor/explore-share.js
M src/client/components/editor/index.js
M src/client/components/editor/info-panel.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/home.js
A src/client/components/related-papers.js
M src/config.js
M src/model/element/element.js
M src/model/element/interaction.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/indra.js
M src/styles/base.css
A src/styles/carousel.css
M src/styles/editor/editor.css
M src/styles/element-info/element-info.css
M src/styles/element-info/entity-info.css
M src/styles/element-info/index.css
M src/styles/element-info/interaction-info.css
M src/styles/home.css
M src/styles/index.css
A src/styles/related-papers.css
M src/util/pubmed.js
Log Message:
-----------
Merge branch 'unstable' into iss753_homepage-tweaks-text
Commit: 125873d64ad8bd2ea2fd2364c5f91debde6f9e2a
https://github.com/PathwayCommons/factoid/commit/125873d64ad8bd2ea2fd2364c5f91debde6f9e2a
Author: Jeffrey <[email protected]>
Date: 2020-06-19 (Fri, 19 Jun 2020)
Changed paths:
M src/server/routes/api/document/pubmed/index.js
M src/server/routes/api/document/pubmed/searchPubmed.js
Log Message:
-----------
Merge pull request #756 from PathwayCommons/iss741_refactoring-find-PubMed
Pubmed articles by paperId
Commit: 8bf4980c0183d20c6cdb06ea4c409c436d02b08a
https://github.com/PathwayCommons/factoid/commit/8bf4980c0183d20c6cdb06ea4c409c436d02b08a
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-19 (Fri, 19 Jun 2020)
Changed paths:
M src/client/components/home.js
M src/styles/base.css
Log Message:
-----------
Punch up the text-decoration with bright white link
Commit: 2172cf55dfe82a372b8615bcf9d68d920a8d3a89
https://github.com/PathwayCommons/factoid/commit/2172cf55dfe82a372b8615bcf9d68d920a8d3a89
Author: Jeffrey Wong <[email protected]>
Date: 2020-06-19 (Fri, 19 Jun 2020)
Changed paths:
A src/client/components/carousel.js
M src/client/components/editor/cy/defs.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/tippy.js
M src/client/components/editor/defs.js
M src/client/components/editor/explore-share.js
M src/client/components/editor/index.js
M src/client/components/editor/info-panel.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/home.js
A src/client/components/related-papers.js
M src/config.js
M src/model/element/element.js
M src/model/element/interaction.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/indra.js
M src/styles/base.css
A src/styles/carousel.css
M src/styles/editor/editor.css
M src/styles/element-info/element-info.css
M src/styles/element-info/entity-info.css
M src/styles/element-info/index.css
M src/styles/element-info/interaction-info.css
M src/styles/home.css
M src/styles/index.css
A src/styles/related-papers.css
M src/util/pubmed.js
Log Message:
-----------
Merge origin/iss753_homepage-tweaks-text into iss753_homepage-tweaks-text
Commit: 73b3c3bbb4d462331cf25a7ff2f3aeaccbb51028
https://github.com/PathwayCommons/factoid/commit/73b3c3bbb4d462331cf25a7ff2f3aeaccbb51028
Author: Jeffrey <[email protected]>
Date: 2020-06-22 (Mon, 22 Jun 2020)
Changed paths:
M src/client-env-vars.json
M src/client/components/home.js
M src/config.js
M src/styles/base.css
M src/styles/home.css
M src/styles/image/home-figure-fg-2.png
A src/styles/image/logo_harvardu.png
A src/styles/image/logo_ohsu.jpg
A src/styles/image/logo_utoronto.png
R src/styles/image/uni-logos-bw.png
R src/styles/image/uni-logos.png
Log Message:
-----------
Merge pull request #754 from PathwayCommons/iss753_homepage-tweaks-text
Iss753 homepage tweaks text
Commit: 8a6ea07b2075eebeaa478fedd911273fd28c56a6
https://github.com/PathwayCommons/factoid/commit/8a6ea07b2075eebeaa478fedd911273fd28c56a6
Author: metincansiper <[email protected]>
Date: 2020-06-22 (Mon, 22 Jun 2020)
Changed paths:
M .travis.yml
M docker/.env
M docker/docker-compose.yml
M package-lock.json
M package.json
M src/client-env-vars.json
A src/client/components/carousel.js
M src/client/components/editor/cy/defs.js
M src/client/components/editor/cy/doc.js
M src/client/components/editor/cy/index.js
M src/client/components/editor/cy/tippy.js
M src/client/components/editor/defs.js
M src/client/components/editor/explore-share.js
M src/client/components/editor/index.js
M src/client/components/editor/info-panel.js
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/client/components/home.js
A src/client/components/related-papers.js
M src/client/components/tasks.js
M src/config.js
M src/model/element/element.js
M src/model/element/interaction.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/indra.js
M src/server/routes/api/document/pubmed/fetchPubmed.js
M src/server/routes/api/document/pubmed/index.js
M src/server/routes/api/document/pubmed/searchPubmed.js
M src/styles/base.css
A src/styles/carousel.css
M src/styles/editor/editor.css
M src/styles/element-info/element-info.css
M src/styles/element-info/entity-info.css
M src/styles/element-info/index.css
M src/styles/element-info/interaction-info.css
M src/styles/home.css
M src/styles/image/home-figure-fg-2.png
A src/styles/image/logo_harvardu.png
A src/styles/image/logo_ohsu.jpg
A src/styles/image/logo_utoronto.png
R src/styles/image/uni-logos-bw.png
R src/styles/image/uni-logos.png
M src/styles/index.css
A src/styles/related-papers.css
M src/util/pubmed.js
M test/pubmed/fetchPubmed.js
A test/pubmed/pmid_151222.xml
Log Message:
-----------
Merge branch 'unstable' into bp_additional_attr
Compare:
https://github.com/PathwayCommons/factoid/compare/635a6fe952f6...8a6ea07b2075
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