Branch: refs/heads/unstable
Home: https://github.com/PathwayCommons/factoid
Commit: 715ede09df6219cec28ba2f54961d86a2a32bac1
https://github.com/PathwayCommons/factoid/commit/715ede09df6219cec28ba2f54961d86a2a32bac1
Author: Max Franz <[email protected]>
Date: 2020-10-28 (Wed, 28 Oct 2020)
Changed paths:
M src/config.js
M src/model/document/document.js
M src/server/routes/api/document/index.js
M src/util/email.js
Log Message:
-----------
Related papers notification
Details:
- This is currently a prototype.
- A new email template type is defined as `relatedPaperNotification`.
- The emails are triggered whenever the related papers are updated for a
document.
- A new metadata field is available on a document.
`doc.relatedPapersNotified()` can be used to set or get whether the
notifications have been sent. This prevents duplicates.
- Novel interactions are an optional enhancement in the emails: An author can
receive an email whether or not the originating factoid has a novel
interaction. However, if there is a novel interaction, this should be
mentioned in the email.
- Currently, only notifications are sent to the terminal. The emails are
disabled until the template is set up.
- Action items are marked by `// TODO RPM`
Action items:
- [ ] Add a template to Mailjet (@jvwong), based on our email document on
Google Docs.
- [ ] Reuse our Indra querying code to determine whether there is a novel
interaction -- i.e. an interaction that has zero results in Indra
(@metincansiper).
- [ ] Verify that our emails send correctly on unstable. We'll temporary set
unstable to send these notifications to Max and Jeff (@maxkfranz @jvwong).
- [ ] Finalise the email template text (@maxkfranz).
- [ ] Research the feasibility of the bonus 'factoidable' nudge: Can we
determine using AI whether a paper is a good candidate for Biofactoid?
Ref. : Novel interaction notification #858
Commit: 1d1a5ed21f6f86ee31b7b32ab9dc315b4f5d2cae
https://github.com/PathwayCommons/factoid/commit/1d1a5ed21f6f86ee31b7b32ab9dc315b4f5d2cae
Author: Jeffrey Wong <[email protected]>
Date: 2020-11-06 (Fri, 06 Nov 2020)
Changed paths:
M src/model/document/document.js
Log Message:
-----------
Attribute for stashing references for the article
Commit: 6dd39ccd92fb39f1c2aabf2af56c2571d4f7b73c
https://github.com/PathwayCommons/factoid/commit/6dd39ccd92fb39f1c2aabf2af56c2571d4f7b73c
Author: Jeffrey Wong <[email protected]>
Date: 2020-11-06 (Fri, 06 Nov 2020)
Changed paths:
M src/server/routes/api/document/pubmed/linkPubmed.js
Log Message:
-----------
- Expose helper function elink2UidList (renamed from data2UidList)
- Accept an optional filter for linknames
Commit: ddfb05c40f3b770abea9ccacd417552def08a892
https://github.com/PathwayCommons/factoid/commit/ddfb05c40f3b770abea9ccacd417552def08a892
Author: Jeffrey Wong <[email protected]>
Date: 2020-11-06 (Fri, 06 Nov 2020)
Changed paths:
M src/server/routes/api/document/index.js
Log Message:
-----------
Add a capability for setting the subset of referenced papers inside the
'getRelPprsForDoc'
Commit: dd4b45a2b15dc8ef8754b1cb5b1e78fea9c7a0e2
https://github.com/PathwayCommons/factoid/commit/dd4b45a2b15dc8ef8754b1cb5b1e78fea9c7a0e2
Author: Jeffrey Wong <[email protected]>
Date: 2020-11-06 (Fri, 06 Nov 2020)
Changed paths:
M src/server/routes/api/document/index.js
Log Message:
-----------
Use the new set of referenced papers.
Commit: fa2050ac8213e66ee38d664742dc6b7bd3563b15
https://github.com/PathwayCommons/factoid/commit/fa2050ac8213e66ee38d664742dc6b7bd3563b15
Author: Jeffrey Wong <[email protected]>
Date: 2020-11-09 (Mon, 09 Nov 2020)
Changed paths:
M src/config.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Add an admin email, use in the relatedPapers emailer.
Commit: 062ee8cd52de38679d4db68c72614f30c761ee3e
https://github.com/PathwayCommons/factoid/commit/062ee8cd52de38679d4db68c72614f30c761ee3e
Author: Jeffrey Wong <[email protected]>
Date: 2020-11-09 (Mon, 09 Nov 2020)
Changed paths:
M src/config.js
M src/server/routes/api/document/index.js
Log Message:
-----------
- emailRelatedPaperAuthors bundled with code for document status being
switched to 'public', following submission
- EMAIL_RELPPRS_CONTACT config that flags whether the relatedPapersEmails
should be sent to contacts (default true)
Commit: d67ad38f17f94cbaaf713bdba36ea696fae9737d
https://github.com/PathwayCommons/factoid/commit/d67ad38f17f94cbaaf713bdba36ea696fae9737d
Author: metincansiper <[email protected]>
Date: 2020-11-09 (Mon, 09 Nov 2020)
Changed paths:
M src/model/element/interaction.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Mark novel interactios.
Commit: fc92759ac2af1a68a654639d0eb5e01b3e8dc297
https://github.com/PathwayCommons/factoid/commit/fc92759ac2af1a68a654639d0eb5e01b3e8dc297
Author: metincansiper <[email protected]>
Date: 2020-11-09 (Mon, 09 Nov 2020)
Changed paths:
M src/model/element/interaction.js
Log Message:
-----------
remove a console statement
Commit: 827d70be7be7086dafefa7644def4f0e9af76711
https://github.com/PathwayCommons/factoid/commit/827d70be7be7086dafefa7644def4f0e9af76711
Author: Jeffrey Wong <[email protected]>
Date: 2020-11-09 (Mon, 09 Nov 2020)
Changed paths:
M src/server/routes/api/document/index.js
Log Message:
-----------
Tie the relatedPapers contact emailing to the admin refresh
Commit: b6623cf93e3b0bdf1b798efc4d93c5b246bc2eec
https://github.com/PathwayCommons/factoid/commit/b6623cf93e3b0bdf1b798efc4d93c5b246bc2eec
Author: Max Franz <[email protected]>
Date: 2020-11-10 (Tue, 10 Nov 2020)
Changed paths:
M src/util/email.js
Log Message:
-----------
Use `logger` to remove linting warning in preparation for merging
Commit: fbbef392e87797f9b89f7bcf3137af0ea2b4dea1
https://github.com/PathwayCommons/factoid/commit/fbbef392e87797f9b89f7bcf3137af0ea2b4dea1
Author: Max Franz <[email protected]>
Date: 2020-11-10 (Tue, 10 Nov 2020)
Changed paths:
M src/server/routes/api/document/index.js
Log Message:
-----------
Set `doc.relatedPapersNotified()` flag
Commit: bf0f241733ea2bcdfecb1524128a28bea5507d8d
https://github.com/PathwayCommons/factoid/commit/bf0f241733ea2bcdfecb1524128a28bea5507d8d
Author: Max Franz <[email protected]>
Date: 2020-11-10 (Tue, 10 Nov 2020)
Changed paths:
M src/config.js
M src/util/email.js
Log Message:
-----------
Set template ID
Commit: 41b4bfe066fa22338b40993d8c5e5d9f5ebbae2e
https://github.com/PathwayCommons/factoid/commit/41b4bfe066fa22338b40993d8c5e5d9f5ebbae2e
Author: metincansiper <[email protected]>
Date: 2020-11-10 (Tue, 10 Nov 2020)
Changed paths:
M src/model/element/interaction.js
Log Message:
-----------
Set the default novel value of interactions as false.
Commit: 88fab26f744599b994472e5cc3037fb01ec7089e
https://github.com/PathwayCommons/factoid/commit/88fab26f744599b994472e5cc3037fb01ec7089e
Author: metincansiper <[email protected]>
Date: 2020-11-10 (Tue, 10 Nov 2020)
Changed paths:
M src/model/element/interaction.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Merge branch 'novel_intn' into email-rel-pprs
Commit: 5526dd7d789c0540c3d690a21e57de524f3a002c
https://github.com/PathwayCommons/factoid/commit/5526dd7d789c0540c3d690a21e57de524f3a002c
Author: Max Franz <[email protected]>
Date: 2020-11-10 (Tue, 10 Nov 2020)
Changed paths:
M src/server/routes/api/document/index.js
Log Message:
-----------
Add interactions filter based on `isNovel()` and add guard within
`emailRelatedPaperAuthors()` re. `doc.relatedPapersNotified()`
Commit: bee0cd55849a5b4471cce73c90dfbd00fa67293f
https://github.com/PathwayCommons/factoid/commit/bee0cd55849a5b4471cce73c90dfbd00fa67293f
Author: Max Franz <[email protected]>
Date: 2020-11-10 (Tue, 10 Nov 2020)
Changed paths:
M src/config.js
M src/model/document/document.js
M src/model/element/interaction.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/pubmed/linkPubmed.js
M src/util/email.js
Log Message:
-----------
Merge pull request #886 from PathwayCommons/email-rel-pprs
Related papers notification
Compare:
https://github.com/PathwayCommons/factoid/compare/194043930023...bee0cd55849a
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