Branch: refs/heads/feature/app-manager
Home: https://github.com/cytoscape/cytoscape-impl
Commit: 9960491bd8af7296a274319f9d30b4e55ab07826
https://github.com/cytoscape/cytoscape-impl/commit/9960491bd8af7296a274319f9d30b4e55ab07826
Author: Mike Kucera <[email protected]>
Date: 2022-08-08 (Mon, 08 Aug 2022)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/ColumnStylePicker.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
Log Message:
-----------
Fix column style event handling.
Commit: 4a247df1e7209eb1c1216acdf397650c7b895eca
https://github.com/cytoscape/cytoscape-impl/commit/4a247df1e7209eb1c1216acdf397650c7b895eca
Author: Christian Lopes <[email protected]>
Date: 2022-08-10 (Wed, 10 Aug 2022)
Changed paths:
M
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/model/CustomGraphicsManagerImpl.java
M
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/task/RestoreImagesTask.java
R
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/task/RestoreImagesTaskFactory.java
Log Message:
-----------
- Fixes new bug where the sample images are removed from the manager when a
new session is created or another session is loaded.
- Better reset the IDGenerator (CG IDs only) before another session is loaded.
- Code cleanup.
-- CYTOSCAPE-11839
Commit: 24ca3fe0ba6dc749dea3a9b035fbca98ca7fedfd
https://github.com/cytoscape/cytoscape-impl/commit/24ca3fe0ba6dc749dea3a9b035fbca98ca7fedfd
Author: Mike Kucera <[email protected]>
Date: 2022-08-15 (Mon, 15 Aug 2022)
Changed paths:
M
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/model/CustomGraphicsManagerImpl.java
M
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/task/RestoreImagesTask.java
R
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/task/RestoreImagesTaskFactory.java
M
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/task/SaveGraphicsToSessionTaskFactory.java
M
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/task/SaveUserImagesTask.java
M
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/task/SaveUserImagesTaskFactory.java
M
custom-graphics-internal/src/main/java/org/cytoscape/cg/model/CustomGraphicsManager.java
Log Message:
-----------
Merge branch 'develop' into feature/table_style_fixes
Commit: 39ea74f19cb59862d881270d6a053602522a8f75
https://github.com/cytoscape/cytoscape-impl/commit/39ea74f19cb59862d881270d6a053602522a8f75
Author: Mike Kucera <[email protected]>
Date: 2022-08-15 (Mon, 15 Aug 2022)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/model/VizMapperProxy.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItemModel.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
Log Message:
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CYTOSCAPE-12986 Use dummy rendering engines so that style can be edited
when no network is currently selected.
Commit: 453d406ce27c2d37e8fe94ad5dcb7b3d72a779c0
https://github.com/cytoscape/cytoscape-impl/commit/453d406ce27c2d37e8fe94ad5dcb7b3d72a779c0
Author: Mike Kucera <[email protected]>
Date: 2022-08-17 (Wed, 17 Aug 2022)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/RemoveVisualMappingsCommand.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
Log Message:
-----------
Fix deleting of column style continuous mapping.
Commit: 71983534cb238b7a8ff93fffead4e2ba355f88fe
https://github.com/cytoscape/cytoscape-impl/commit/71983534cb238b7a8ff93fffead4e2ba355f88fe
Author: Scooter Morris <[email protected]>
Date: 2022-08-17 (Wed, 17 Aug 2022)
Changed paths:
M
app-impl/src/main/java/org/cytoscape/app/internal/task/ListUpdatesTask.java
Log Message:
-----------
Fix CYTOSCAPE-12992 Increment the index *before* the test....
Commit: 37229607a09d4d015752be38ed9dc2733936b5ff
https://github.com/cytoscape/cytoscape-impl/commit/37229607a09d4d015752be38ed9dc2733936b5ff
Author: Scooter Morris <[email protected]>
Date: 2022-08-17 (Wed, 17 Aug 2022)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/RemoveVisualMappingsCommand.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
Log Message:
-----------
Merge branch 'develop' of github.com:cytoscape/cytoscape-impl into develop
Commit: 8b843e6b19e3c311466d95ba0c7f43990cfa2eba
https://github.com/cytoscape/cytoscape-impl/commit/8b843e6b19e3c311466d95ba0c7f43990cfa2eba
Author: Mike Kucera <[email protected]>
Date: 2022-08-18 (Thu, 18 Aug 2022)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/GraphObjectType.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/CopyContinuousMappingCommand.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/StartupCommand.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CopyContinuousMappingTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/NotificationNames.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
Log Message:
-----------
Add quick-copy action for cell background color.
Commit: 1e51572068113cf60f34819947c544007f367067
https://github.com/cytoscape/cytoscape-impl/commit/1e51572068113cf60f34819947c544007f367067
Author: Mike Kucera <[email protected]>
Date: 2022-08-19 (Fri, 19 Aug 2022)
Changed paths:
M search2-impl/src/main/java/org/cytoscape/search/internal/CyActivator.java
M
search2-impl/src/main/java/org/cytoscape/search/internal/index/SearchManager.java
Log Message:
-----------
CYTOSCAPE-12995 Temporary folder for search indexes deleted on exit.
Commit: 2c12824ea7cc415a3a71ffbbee69a40c3482cb23
https://github.com/cytoscape/cytoscape-impl/commit/2c12824ea7cc415a3a71ffbbee69a40c3482cb23
Author: Mike Kucera <[email protected]>
Date: 2022-08-23 (Tue, 23 Aug 2022)
Changed paths:
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/ColumnSpec.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/ColumnStyleAddColumnPopup.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
Log Message:
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Table styles: sort columns alphabetically
Commit: f01c5f92143246c0352d4488612a4577b2932fea
https://github.com/cytoscape/cytoscape-impl/commit/f01c5f92143246c0352d4488612a4577b2932fea
Author: Mike Kucera <[email protected]>
Date: 2022-08-23 (Tue, 23 Aug 2022)
Changed paths:
M
equations-impl/src/main/java/org/cytoscape/equations/internal/Tokeniser.java
M
equations-impl/src/test/java/org/cytoscape/equations/internal/AttribParserTest.java
M
equations-impl/src/test/java/org/cytoscape/equations/internal/TokeniserTest.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorMediator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/TutorialItems.java
Log Message:
-----------
CYTOSCAPE-12993 Remove need to escape parens or commas in equation
identifer. Auto-escape rest of special chars in formula builder.
Commit: 8f77e896b84e09582505e878481f2b3877ab0970
https://github.com/cytoscape/cytoscape-impl/commit/8f77e896b84e09582505e878481f2b3877ab0970
Author: Mike Kucera <[email protected]>
Date: 2022-08-25 (Thu, 25 Aug 2022)
Changed paths:
M gui-cmdline-parser-impl/pom.xml
M
gui-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/gui/internal/CyActivator.java
A
gui-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/gui/internal/SessionLoadHandler.java
M
gui-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/gui/internal/StartupConfig.java
Log Message:
-----------
CYTOSCAPE-12459 Use install4j API to detect double-click on .cys file
after cytoscape has already started.
Commit: 0ff3e9ad21e1d078df6069d5723da098a52a3437
https://github.com/cytoscape/cytoscape-impl/commit/0ff3e9ad21e1d078df6069d5723da098a52a3437
Author: Mike Kucera <[email protected]>
Date: 2022-08-26 (Fri, 26 Aug 2022)
Changed paths:
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Split.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/CyActivator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorMediator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorPanel.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/ItemListPanel.java
A
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/ItemPanel.java
A
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/ItemTreePanel.java
Log Message:
-----------
Function Builder: replace function list with a tree
Commit: fec73cc1445eec009de5476f4fc711902ae5f8d5
https://github.com/cytoscape/cytoscape-impl/commit/fec73cc1445eec009de5476f4fc711902ae5f8d5
Author: Mike Kucera <[email protected]>
Date: 2022-08-29 (Mon, 29 Aug 2022)
Changed paths:
M
vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/ApplyToColumnHandler.java
Log Message:
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CYTOSCAPE-12916 Table style mapping default on blank cells.
Commit: 8ba4a1f11897670ef1983f8f11c15a2ae5d1a3d0
https://github.com/cytoscape/cytoscape-impl/commit/8ba4a1f11897670ef1983f8f11c15a2ae5d1a3d0
Author: Mike Kucera <[email protected]>
Date: 2022-09-01 (Thu, 01 Sep 2022)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
Log Message:
-----------
Format code to use tabs correctly.
Commit: 2c881852de39a2d3d233e8d1ffbd29b0bb5a1f60
https://github.com/cytoscape/cytoscape-impl/commit/2c881852de39a2d3d233e8d1ffbd29b0bb5a1f60
Author: Mike Kucera <[email protected]>
Date: 2022-09-02 (Fri, 02 Sep 2022)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DEdgeDetails.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
Log Message:
-----------
CYTOSCAPE-12588 Selection Lasso: select edges between selected nodes
Commit: 19ac86d1923b2efaa325e4316743507bc44819cb
https://github.com/cytoscape/cytoscape-impl/commit/19ac86d1923b2efaa325e4316743507bc44819cb
Author: Scooter Morris <[email protected]>
Date: 2022-09-15 (Thu, 15 Sep 2022)
Changed paths:
M app-impl/src/main/java/org/cytoscape/app/internal/task/ListAppsTask.java
Log Message:
-----------
CYTOSCAPE-13004 If we ask for a list of installed or available apps,
pull the description from the app store (if there is one)
Commit: 52db1ab3154ac7f5487dacdfb7332c09b560ed80
https://github.com/cytoscape/cytoscape-impl/commit/52db1ab3154ac7f5487dacdfb7332c09b560ed80
Author: Alexander Pico <[email protected]>
Date: 2022-09-20 (Tue, 20 Sep 2022)
Changed paths:
M app-impl/src/main/java/org/cytoscape/app/internal/task/ListAppsTask.java
M
app-impl/src/main/java/org/cytoscape/app/internal/task/ListUpdatesTask.java
M
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/model/CustomGraphicsManagerImpl.java
M
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/task/RestoreImagesTask.java
R
custom-graphics-internal/src/main/java/org/cytoscape/cg/internal/task/RestoreImagesTaskFactory.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DEdgeDetails.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/Tokeniser.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Split.java
M
equations-impl/src/test/java/org/cytoscape/equations/internal/AttribParserTest.java
M
equations-impl/src/test/java/org/cytoscape/equations/internal/TokeniserTest.java
M gui-cmdline-parser-impl/pom.xml
M
gui-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/gui/internal/CyActivator.java
A
gui-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/gui/internal/SessionLoadHandler.java
M
gui-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/gui/internal/StartupConfig.java
M search2-impl/src/main/java/org/cytoscape/search/internal/CyActivator.java
M
search2-impl/src/main/java/org/cytoscape/search/internal/index/SearchManager.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/CyActivator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorMediator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorPanel.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/ItemListPanel.java
A
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/ItemPanel.java
A
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/ItemTreePanel.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/TutorialItems.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/ColumnSpec.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/GraphObjectType.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/CopyContinuousMappingCommand.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/RemoveVisualMappingsCommand.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/controller/StartupCommand.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/model/VizMapperProxy.java
A
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/CopyContinuousMappingTask.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/util/NotificationNames.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/ColumnStyleAddColumnPopup.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/ColumnStylePicker.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItemModel.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMediator.java
M
vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/ApplyToColumnHandler.java
Log Message:
-----------
Merge pull request #45 from cytoscape/develop
update 'feature/app-manager' branch with latest 'develop'
Compare:
https://github.com/cytoscape/cytoscape-impl/compare/bbd6e0e645a8...52db1ab3154a
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