Branch: refs/heads/release/3.10.2
Home: https://github.com/cytoscape/cytoscape-impl
Commit: e17651cff1c7bcbd72648287c0572c43f5f6bd1c
https://github.com/cytoscape/cytoscape-impl/commit/e17651cff1c7bcbd72648287c0572c43f5f6bd1c
Author: Mike Kucera <[email protected]>
Date: 2024-01-08 (Mon, 08 Jan 2024)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/layout/ui/LayoutSettingsDialog.java
Log Message:
-----------
CYTOSCAPE-13121 Make (default) more visible in layout settings dialog
Commit: 6061da09d767623e4c765ac6aee4b4b8603a1c23
https://github.com/cytoscape/cytoscape-impl/commit/6061da09d767623e4c765ac6aee4b4b8603a1c23
Author: Scooter Morris <[email protected]>
Date: 2024-01-08 (Mon, 08 Jan 2024)
Changed paths:
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/read/gml/GMLParser.java
Log Message:
-----------
Modified GMLParser to wrap whitespace around start and end list. Fixes
CYTOSCAPE-13107
Commit: c70ea37f4268b3a56d717f472e82627df53b1ad5
https://github.com/cytoscape/cytoscape-impl/commit/c70ea37f4268b3a56d717f472e82627df53b1ad5
Author: Scooter Morris <[email protected]>
Date: 2024-01-08 (Mon, 08 Jan 2024)
Changed paths:
M linkout-impl/src/main/resources/linkout.props
Log Message:
-----------
OK, adjusted URI format. For some reason, the uniprot web site doesn't
load using CyBrowser, so this will only work if you use the system
browser. CYTOSCAPE-13104
Commit: b38f5866dbe74419bf16ac6eabfd8325f5c16193
https://github.com/cytoscape/cytoscape-impl/commit/b38f5866dbe74419bf16ac6eabfd8325f5c16193
Author: Scooter Morris <[email protected]>
Date: 2024-01-08 (Mon, 08 Jan 2024)
Changed paths:
M linkout-impl/src/main/resources/linkout.props
Log Message:
-----------
CYTOSCAPE-13104 -- just removed the gene: to do a more generic search
Commit: 20cf9161147fb7d3f69d88a685c9be3df953706e
https://github.com/cytoscape/cytoscape-impl/commit/20cf9161147fb7d3f69d88a685c9be3df953706e
Author: Christian Lopes <[email protected]>
Date: 2024-01-11 (Thu, 11 Jan 2024)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/ArrowIcon.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/icon/VisualPropertyIconFactory.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/cellrenderer/IconCellRenderer.java
Log Message:
-----------
Fixes the icons for edge arrows on the VizMapper: incorrect proportions
(e.g. CIRCLE, SQUARE), misalignments (HALF_TOP, HALF_BOTTOM), incorrect
edge intersection (ARROWs).
Commit: 1576051b0176e3883786b0d29175d4f16c33a678
https://github.com/cytoscape/cytoscape-impl/commit/1576051b0176e3883786b0d29175d4f16c33a678
Author: Mike Kucera <[email protected]>
Date: 2024-02-01 (Thu, 01 Feb 2024)
Changed paths:
M
search2-impl/src/main/java/org/cytoscape/search/internal/index/CustomMultiFieldQueryParser.java
Log Message:
-----------
CYTOSCAPE-13113 allow leading wildcard in lucene search
Commit: 20a25f79cbc810a757e5adffa7f189a48584549e
https://github.com/cytoscape/cytoscape-impl/commit/20a25f79cbc810a757e5adffa7f189a48584549e
Author: Mike Kucera <[email protected]>
Date: 2024-02-01 (Thu, 01 Feb 2024)
Changed paths:
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/SwingTaskMonitor.java
Log Message:
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CYTOSCAPE-13126 Move history.addMessage() off the EDT. Reformat code.
Commit: fa24c1f32f31398cfe4fd120e5afd5e0fd3ef03f
https://github.com/cytoscape/cytoscape-impl/commit/fa24c1f32f31398cfe4fd120e5afd5e0fd3ef03f
Author: Mike Kucera <[email protected]>
Date: 2024-02-01 (Thu, 01 Feb 2024)
Changed paths:
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/task/TaskHistory.java
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/view/TaskHistoryWindow.java
Log Message:
-----------
CYTOSCAPE-13126 TaskHistory max size. TaskHistoryWindow debounce.
Reformat code.
Commit: 24895b04555744f9dbaa672244e750c47764119a
https://github.com/cytoscape/cytoscape-impl/commit/24895b04555744f9dbaa672244e750c47764119a
Author: Scooter Morris <[email protected]>
Date: 2024-02-05 (Mon, 05 Feb 2024)
Changed paths:
M group-impl/src/main/java/org/cytoscape/group/internal/CyActivator.java
M
group-impl/src/main/java/org/cytoscape/group/internal/view/NodeChangeListener.java
Log Message:
-----------
Possible fix for CYTOSCAPE-13125 We registered the SessionLoaded
listener, which clears all of the maps and we added a
NetworkViewAboutToBeDestroyed listener to remove the keys from the maps
as the view goes away.
Commit: d3b2afbbded887c6c24c2c081057f8aacce0d0a9
https://github.com/cytoscape/cytoscape-impl/commit/d3b2afbbded887c6c24c2c081057f8aacce0d0a9
Author: Christian Lopes <[email protected]>
Date: 2024-02-08 (Thu, 08 Feb 2024)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/StarterPanel.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/view/help/HelpLinkTaskFactory.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/view/util/SVGIcon.java
A swing-application-impl/src/main/resources/images/python-logo.svg
A swing-application-impl/src/main/resources/images/r-logo.svg
Log Message:
-----------
Adds "py4cytoscape" and "RCy3" to "Help.Automation" menu.
Minor redesign of the Start panel, including the addition of links to
py4cytoscape and RCy3.
-- CYTOSCAPE-13129
Commit: 31cba02fa55179dd3fdeb729e8ba1f666c0313d1
https://github.com/cytoscape/cytoscape-impl/commit/31cba02fa55179dd3fdeb729e8ba1f666c0313d1
Author: Mike Kucera <[email protected]>
Date: 2024-02-14 (Wed, 14 Feb 2024)
Changed paths:
A
editor-impl/src/main/java/org/cytoscape/editor/internal/SIFInterpreterEdgeEdit.java
A
editor-impl/src/main/java/org/cytoscape/editor/internal/SIFInterpreterNodeEdit.java
M
editor-impl/src/main/java/org/cytoscape/editor/internal/SIFInterpreterTask.java
Log Message:
-----------
Merge branch 'release/3.10.2' of [email protected]:cytoscape/cytoscape-impl.git
into release/3.10.2
Compare:
https://github.com/cytoscape/cytoscape-impl/compare/c6256a33f3c9...31cba02fa551
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