Branch: refs/heads/unstable
Home: https://github.com/PathwayCommons/factoid
Commit: 80ddd831b7cb731a3baa99df549fa566e0b47484
https://github.com/PathwayCommons/factoid/commit/80ddd831b7cb731a3baa99df549fa566e0b47484
Author: fileoy <[email protected]>
Date: 2024-07-31 (Wed, 31 Jul 2024)
Changed paths:
A test/pubtator/map.js
M test/pubtator/pubtator.js
Log Message:
-----------
Testing organism hints mapper for BioC documents.
The mapper return an array of arryays,
- where the first array is the hints extracted from the title,
- and the second array is the hints extracted from the abstract.
each hint is a normailzed id of the organism.
Commit: 567f0264d23f0b4dfed88b4a6e24f2746507ab60
https://github.com/PathwayCommons/factoid/commit/567f0264d23f0b4dfed88b4a6e24f2746507ab60
Author: fileoy <[email protected]>
Date: 2024-08-04 (Sun, 04 Aug 2024)
Changed paths:
M src/model/hint.js
A src/server/routes/api/document/hint/pubtator.js
A src/util/registry.js
R test/pubtator/map.js
M test/pubtator/pubtator.js
Log Message:
-----------
Tested the map function in the pubtator.js file.
It detects organism hints ONLY. It does not detect other hints YET.
Commit: d733b4b4ad739f648a3c6ea0016af55c042e2392
https://github.com/PathwayCommons/factoid/commit/d733b4b4ad739f648a3c6ea0016af55c042e2392
Author: fileoy <[email protected]>
Date: 2024-08-07 (Wed, 07 Aug 2024)
Changed paths:
M src/model/hint.js
M src/server/routes/api/document/hint/pubtator.js
M test/pubtator/10.1016_j.molcel.2019.03.023.json
R test/pubtator/10.1016_j.molcel.2024.01.007.json
M test/pubtator/10.1038_s41556-021-00642-9.json
M test/pubtator/10.1126_scisignal.abf3535.json
M test/pubtator/10.15252_embj.2023113616.json
M test/pubtator/pubtator.js
A test/pubtator/pubtator_8.json
Log Message:
-----------
// Content:
- Some tweaks to the hint model
- Added a new test case for hints mapper
- added a new JSON file with many-to-many organism's hints
Commit: a491ddf33b556fcd1e8a6a582535cfe0533391ae
https://github.com/PathwayCommons/factoid/commit/a491ddf33b556fcd1e8a6a582535cfe0533391ae
Author: fileoy <[email protected]>
Date: 2024-08-08 (Thu, 08 Aug 2024)
Changed paths:
M test/pubtator/pubtator.js
Log Message:
-----------
.
Commit: d0c02d4399114d89b4d949a241f4d5701b894d01
https://github.com/PathwayCommons/factoid/commit/d0c02d4399114d89b4d949a241f4d5701b894d01
Author: fileoy <[email protected]>
Date: 2024-08-08 (Thu, 08 Aug 2024)
Changed paths:
M test/pubtator/pubtator.js
Log Message:
-----------
typo
Commit: dbd1ca0b5468ff03a77defe523d8cb6bedd1b145
https://github.com/PathwayCommons/factoid/commit/dbd1ca0b5468ff03a77defe523d8cb6bedd1b145
Author: Jeffrey <[email protected]>
Date: 2024-08-08 (Thu, 08 Aug 2024)
Changed paths:
M src/model/hint.js
A src/server/routes/api/document/hint/pubtator.js
A src/util/registry.js
M test/pubtator/10.1016_j.molcel.2019.03.023.json
R test/pubtator/10.1016_j.molcel.2024.01.007.json
M test/pubtator/10.1038_s41556-021-00642-9.json
M test/pubtator/10.1126_scisignal.abf3535.json
M test/pubtator/10.15252_embj.2023113616.json
M test/pubtator/pubtator.js
A test/pubtator/pubtator_8.json
Log Message:
-----------
Merge pull request #1293 from PathwayCommons/iss1148_testing-hints-mapper
Testing organism hints mapper for BioC documents.
Compare:
https://github.com/PathwayCommons/factoid/compare/e9e05e450bbc...dbd1ca0b5468
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