I added a new note to http://progetti.arstecnica.it/trac+darcs/ticket/1
As per discussion with Lele (a couple of months ago), this could probably be fixed by using "darcs annotate"'s builtin ability to give you the version of the filesystem that existed at the time of a specified patch. This would be a more elegant replacement for darcs+trac's current approach which doesn't ask darcs what the filesystem looked like at a specific patch but instead tries (not very hard) to guess. Alberto Bertogli's ann2ascii.py already exists to parse the output of "darcs annotate --patch=$PATCH".
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