What does das1->das2 mean by the way, Jim? a client component to make das1 sources look like das2, server component to do same, or vice versa?
On 4 Feb 2011, at 15:19, Gregg Helt wrote: > The core genomancer code is pretty stable, most of the recent work is > in plugins (and some work in the core to allow more extensive > plugins). > > You should be able to get a working DAS1-->DAS2 proxy running from > the current head of the Trellis SVN repository -- you would just need > to add a web.xml config file with servlet parameters to get it going in a > servlet container like Tomcat, or alternatively run the built-in Jetty server > (ExampleJettyDas2Server) and edit servlet parameters directly in code. > > But if the intent is to load DAS 1.x data into IGB, I don't think you > need to use Trellis. Th latest IGB (6.4.1 loaded via WebStart) > already supports DAS 1.5 access. In the "Data Access" tab, under > "Choose Data Sources and Data Sets" section click the "Configure" > button. This brings up a window with a "Data Sources" tab, and in > that tab you can click the "Add" button to bring up a dialog that lets > you select "DAS" for the data source type, and enter the URL for a DAS > server. This worked fine for loading data from the UCSC DAS 1.5 > server -- I haven't tried accessing data from any other DAS servers > recently. > > I'm forwarding to the genoviz-devel list for IGB developments and > discussion, to see if anyone currently working on IGB can add any more > info. > > On Tue, Feb 1, 2011 at 7:51 AM, Jim Procter > <[email protected]> wrote: >> >> Hi all (but Gregg in particular!) >> >> I was wondering whether the DAS1 to DAS2 proxy component of Trellis/Ivy >> in the Genomancer project (http://code.google.com/p/genomancer/) is >> stable enough to use. We'd like to set up an in house DAS1->2 proxy and >> it looks like there's a moderate amount of commit activity in the >> project at the moment, making me a little nervous about attempting to >> use the code in a production(ish) setting. >> >> many thanks in advance, >> Jim. >> >> -- >> ------------------------------------------------------------------- >> J. B. Procter (JALVIEW/ENFIN) Barton Bioinformatics Research Group >> Phone/Fax:+44(0)1382 388734/345764 http://www.compbio.dundee.ac.uk >> The University of Dundee is a Scottish Registered Charity, No. SC015096. >> >> _______________________________________________ >> DAS mailing list >> [email protected] >> http://lists.open-bio.org/mailman/listinfo/das >> > > _______________________________________________ > DAS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/das _______________________________________________ DAS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/das
