Hello,
In revision 17150, I get the following linking error on my Intel Mac
running 10.5:
cd /Users/jpitt/prog/lib/deal/lib && /usr/bin/make external-links
======================debug============= Linking library:
libpetscall.g.dylib
ld: unknown option: -soname
collect2: ld returned 1 exit status
make[1]: *** [libpetscall.g.dylib] Error 1
make: *** [deps] Error 2
I noticed that the -soname option appears throughout lib/Makefile. If
I backup to revision 17100, everything is fine. Do you think there is
some problem with my configuration? I am using the line:
/configure CC=mpicc CXX=mpicxx F77=mpif77 FC=mpif90 --with-umfpack --
with-blas --with-lapack --enable-multithreading --with-multithreading
I have attached the configuration out put below as well.
Best Regards,
Jon Pitt
[12:05:[EMAIL PROTECTED]:~/prog/lib/deal] ./configure CC=mpicc
CXX=mpicxx F77=mpif77 FC=mpif90 --with-umfpack --with-blas --with-
lapack --enable-multithreading --with-multithreading
Configuring deal.II version 6.2.pre
checking build system type... i386-apple-darwin9.5.0
checking host system type... i386-apple-darwin9.5.0
checking target system type... i386-apple-darwin9.5.0
---------------- configuring C/C++ compilers ----------------
checking for gcc... mpicc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking for mpicc... /Users/jpitt/prog/lib/mpi/bin/mpicc
checking whether we are using the GNU C++ compiler... yes
checking whether mpicxx accepts -g... yes
checking for mpicxx... /Users/jpitt/prog/lib/mpi/bin/mpicxx
C++ compiler is gcc4.0 (subversion gcc4.0.1)
checking if the compiler is built for MPI... yes
checking whether qualifiers in return types lead to a warning... no
checking for std::advance warning... no
checking whether we can use -Wno-long-double... yes
checking whether -ggdb works... yes
C compiler is gcc-4.0
checking whether compiler understands option -Wl,-rpath... yes
checking for platform specific multi-threading defines... not necessary
checking for only partly bracketed mutex initializer... no
checking for posix thread functions... ok
checking for posix thread mutex functions... ok
checking for posix thread condition variable functions... ok
checking for posix thread barrier functions... not found. barriers
will not be supported
checking whether AssertThrow works with debug flags... yes
checking whether AssertThrow works with optimized flags... yes
checking for local computed template typedef bug... no
checking for partially specialized template access control bug... no
checking for template member operator instantiation bug... no
checking for 1st template friend in namespace bug... no
checking for 2nd template friend in namespace bug... no
checking for template specialization friend bug... no
checking for bug with implementing pure functions... yes. using
workaround
checking for template template typedef bug... no
checking for address of template template function bug... no
checking for nested classes are implicit friends bug... no
checking for nested template class friends bug... yes. using workaround
checking for member variable specialization bug... no
checking for template member function specialization bug... no
checking for long double optimization bug... no
checking for anonymous namespace and name mangling bug... no
checking for anonymous namespace and weak linkage bug... yes
checking for bogus warning with anonymous namespaces... no
checking for weak linkage bug (Apple gcc3.3) ... no
checking for SFINAE bug... no
checking for template operator disambiguation bug... no
checking for array assignment in conditional bug... no
checking for explicit template constructor bug... no
checking for warning bug with type qualifiers... no
checking for problem with -Wsynth and std::complex... no
checking for __PRETTY_FUNCTION__... yes
checking for std::iterator class... yes
checking for std::i/ostringstream classes... yes
checking for std::numeric_limits classes... yes
checking for <ostream> header... yes
checking for <iosfwd> header... yes
checking for __builtin_expect... yes
checking for __verbose_terminate_handler... yes
checking for glibc-like stacktrace information... yes
checking whether compiler accepts -rdynamic... yes
checking for libstdc++ demangler... yes
checking for minimal std::vector<T> capacity... 1
checking for minimal std::vector<bool> capacity... 32
checking for exception specifications on abort()... none
checking whether getrusage is properly declared... yes
checking whether isnan is declared with debug flags... no.
checking whether isnan is declared with optimized flags... no.
checking for std::isfinite... yes
checking for rand_r... no
checking for quad vs. quad_t define... no
checking for definitions of error codes in errno.h... yes
checking for gethostname... yes
checking for getpid... yes
checking how to run the C++ preprocessor... /Users/jpitt/prog/lib/mpi/
bin/mpicxx -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking sys/syscall.h usability... yes
checking sys/syscall.h presence... yes
checking for sys/syscall.h... yes
checking for bad socket functions/FPU interaction... no
checking boost/shared_ptr.hpp usability... yes
checking boost/shared_ptr.hpp presence... yes
checking for boost/shared_ptr.hpp... yes
checking boost/type_traits.hpp usability... yes
checking boost/type_traits.hpp presence... yes
checking for boost/type_traits.hpp... yes
checking boost/tuple/tuple.hpp usability... yes
checking boost/tuple/tuple.hpp presence... yes
checking for boost/tuple/tuple.hpp... yes
checking for boost::shared_ptr assignment operator= template buglet...
no
----------------- configuring F77 compilers -----------------
checking for gfortran... /usr/local/bin/gfortran
F77 compiler is gcc-4.4
checking for e_wsfe in -lg2c... no
checking for _gfortran_allocate in -lgfortran... no
checking for _gfortran_st_write_done in -lgfortran... no
-------------- configuring shared/static libs ---------------
checking for ar... ar
checking for ar... /usr/bin/ar
checking for ranlib... ranlib
checking for ranlib... /usr/bin/ranlib
---------------- configuring additional libs ----------------
checking for PETSc library directory... /Users/jpitt/prog/lib/petsc
checking for PETSc version... 2.3.3
checking for PETSc library architecture... darwin9.5.0-cxx-opt
checking for PETSc libmpiuni library...
checking for Trilinos library directory... /Users/jpitt/prog/lib/
trilinos
checking whether Trilinos uses shared libraries... yes
checking whether Trilinos uses static libraries... yes
checking -framework Accelerate... yes
checking for HSL subroutines... none found
checking for crc32 in -lz... yes
checking netcdfcpp.h usability... no
checking netcdfcpp.h presence... no
checking for netcdfcpp.h... no
checking for Metis library directory... /Users/jpitt/prog/lib/metis
checking for Metis version... METIS 4.0.1 Mon Nov 30 10:27:29 CST 1998
checking UmfPack library... using included version
checking for dgbsv_ in -llapack... yes
checking for daxpy_... yes
checking for dgemv_... yes
checking for sgemv_... yes
checking for dgeev_... yes
checking for sgeev_... yes
checking for dgeevx_... yes
checking for sgeevx_... yes
checking for dgesvd_... yes
checking for sgesvd_... yes
checking for dgetrf_... yes
checking for sgetrf_... yes
checking for dgetrs_... yes
checking for sgetrs_... yes
checking for dstev_... yes
checking for sstev_... yes
------------------ checking compiler flags ------------------
checking for CPU to optimize for... none given or not recognized
checking for consistency of CXXFLAGSG flags... yes
checking for consistency of CXXFLAGSO flags... yes
---------------- configuring other programs -----------------
checking for doxygen... no
checking for dot... no
checking for perl... /usr/bin/perl
--------------------- generating output ---------------------
configure: creating ./config.status
config.status: creating common/Make.global_options
config.status: creating common/Makefile.template
config.status: creating common/scripts/make_dependencies.pl
config.status: creating Version
config.status: creating doc/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/doxygen/options.dox
config.status: creating doc/doxygen/options.136
config.status: creating doc/doxygen/header.html
config.status: creating doc/doxygen/header.136
config.status: creating doc/doxygen/header.tex
config.status: creating common/template-arguments
config.status: creating base/include/base/config.h
=== configuring in contrib (/Users/jpitt/prog/lib/deal/contrib)
configure: running /bin/sh ./configure '--prefix=/Users/jpitt/prog/lib/
deal' 'CC=mpicc' 'CXX=mpicxx' 'F77=mpif77' 'FC=mpif90' '--with-
umfpack' '--with-blas' '--with-lapack' '--enable-multithreading' '--
with-multithreading' --cache-file=/dev/null --srcdir=.
---------------- configuring contrib subdir -----------------
configure: creating ./config.status
config.status: creating Makefile
=== configuring in utilities (/Users/jpitt/prog/lib/deal/contrib/
utilities)
configure: running /bin/sh ./configure '--prefix=/Users/jpitt/prog/lib/
deal' 'CC=mpicc' 'CXX=mpicxx' 'F77=mpif77' 'FC=mpif90' '--with-
umfpack' '--with-blas' '--with-lapack' '--enable-multithreading' '--
with-multithreading' --cache-file=/dev/null --srcdir=.
configure: creating ./config.status
config.status: creating Makefile
-------------------------------------------------------------
The deal.II library is now configured. In order to
compile it and to generate the documentation, just
call 'make' without arguments for a list of options.
For more information, see the doc/readme.html file.
-------------------------------------------------------------
Please add the line
export DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH:/Users/jpitt/prog/
lib/deal/lib
to your .bash_profile file so that OSX will be
able to find the deal.II shared libraries when
executing your programs.
WARNING: During configuration, no version of the doxygen
WARNING: documentation generation program could be found.
WARNING: You can still use the library, but you won't be
WARNING: able to generate API documentation locally on
WARNING: your machine. It is available for download,
WARNING: however.
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