I am having trouble installing deal.ii (svn) with Trilinos 10.4.2 on a
linux system (itasca.msi.umn.edu). I believe the problem i is the same
one that another user was having last year (message included below). I
am trying to use OpenMPI 1.4.4 with the intel compilers version 12.1.
I successfully compiled and installed Trilinos with MPI, using this
configure command:
CC=mpicc CXX=mpic++ FC=mpif90 F77=mpif77 F90=mpif90 cmake -D
Trilinos_ENABLE_OPTIONAL_PACKAGES:BOOL=ON \ -D
Trilinos_ENABLE_Sacado:BOOL=ON \
-D Trilinos_ENABLE_Stratimikos:BOOL=ON \
-D CMAKE_BUILD_TYPE:STRING=RELEASE \
-D CMAKE_CXX_FLAGS:STRING="-g -O3" \
-D CMAKE_C_FLAGS:STRING="-g -O3" \
-D CMAKE_FORTRAN_FLAGS:STRING="-g -O3" \
-D CMAKE_VERBOSE_MAKEFILE:BOOL=FALSE \
-D Trilinos_VERBOSE_CONFIGURE:BOOL=FALSE \
-D TPL_ENABLE_MPI:BOOL=ON \
-D CMAKE_INSTALL_PREFIX:PATH=/home/it2/max/sw/trilinos-10.4.2 \
-D BUILD_SHARED_LIBS:BOOL=ON \
-D
TPL_BLAS_LIBRARIES:STRING="/soft/intel/x86_64/12.1/8.273/composer_xe_2011_sp1.8.273/mkl/lib/intel64/libmkl_blas95_lp64.a"
\
-D
TPL_LAPACK_LIBRARIES:STRING="/soft/intel/x86_64/12.1/8.273/composer_xe_2011_sp1.8.273/mkl/lib/intel64/libmkl_lapack95_lp64.a"
\
`pwd`/..
I then proceeded to configure deal.ii using:
CC=mpicc CXX=mpic++ F90=mpif90 F77=mpif77 ./configure --enable-shared
--enable-mpi --disable-threads --with-umfpack
--with-blas="mkl_intel_lp64 -Wl,--start-group
-L/soft/intel/x86_64/12.1/8.273/composer_xe_2011_sp1.8.273/mkl/lib/intel64
-lmkl_intel_thread -lmkl_core -Wl,--end-group -liomp5 -lpthread"
--with-p4est=/home/it2/max/sw/p4est
--with-trilinos=/home/it2/max/sw/trilinos-10.4.2
--with-trilinos-include=/home/it2/max/sw/trilinos-10.4.2/include
--with-trilinos-libs=/home/it2/max/sw/trilinos-10.4.2/lib
Compilation is aborted with the following error message:
/home/it2/max/sw/deal.II/source/lac/trilinos_precondition.cc(519):
error: namespace "ML_Epetra" has no member "SetDefaults"
ML_Epetra::SetDefaults("SA",parameter_list);
^
/home/it2/max/sw/deal.II/source/lac/trilinos_precondition.cc(550):
error: namespace "ML_Epetra" has no member "SetDefaults"
ML_Epetra::SetDefaults("NSSA",parameter_list);
^
/home/it2/max/sw/deal.II/source/lac/trilinos_precondition.cc(630):
error: the type in a dynamic_cast must be a pointer or reference to a
complete class type, or void *
dynamic_cast<ML_Epetra::MultiLevelPreconditioner*>
(preconditioner.get());
^
/home/it2/max/sw/deal.II/source/lac/trilinos_precondition.cc(633):
error: pointer to incomplete class type is not allowed
multilevel_operator->PrintUnused(0);
^
/home/it2/max/sw/deal.II/source/lac/trilinos_precondition.cc(644):
error: incomplete type is not allowed
preconditioner.reset (new ML_Epetra::MultiLevelPreconditioner
^
/home/it2/max/sw/deal.II/source/lac/trilinos_precondition.cc(645):
error: expected a ")"
(matrix.trilinos_matrix(), ml_parameters));
^
/home/it2/max/sw/deal.II/source/lac/trilinos_precondition.cc(644):
error: no instance of overloaded function "boost::shared_ptr<T>::reset
[with T=Epetra_Operator]" matches the argument list
argument types are: (<error-type>)
object type is: boost::shared_ptr<Epetra_Operator>
preconditioner.reset (new ML_Epetra::MultiLevelPreconditioner
^
/home/it2/max/sw/deal.II/source/lac/trilinos_precondition.cc(682):
error: the type in a dynamic_cast must be a pointer or reference to a
complete class type, or void *
dynamic_cast<ML_Epetra::MultiLevelPreconditioner*>
(preconditioner.get());
^
/home/it2/max/sw/deal.II/source/lac/trilinos_precondition.cc(683):
error: pointer to incomplete class type is not allowed
multilevel_operator->ReComputePreconditioner();
^
compilation aborted for
/home/it2/max/sw/deal.II/source/lac/trilinos_precondition.cc (code 2)
Here is the actual command being run by make (retrieved using make -n)
echo "======================optimized====== lac/trilinos_precondition.cc"
/opt/openmpi/1.4.4/intel/bin/mpic++ -DHAVE_CONFIG_H -DHAVE_ISNAN
-DBOOST_NO_HASH -DBOOST_NO_SLIST -O2 -unroll -w0 -wd424 -wd11
-opt-report 0 -vec-report0 -fPIC -I/home/it2/max/sw/p4est/FAST/include
-I/home/it2/max/sw/deal.II/include
-I/home/it2/max/sw/deal.II/include/deal.II
-I/home/it2/max/sw/deal.II/contrib/boost-1.49.0/include
-I/home/it2/max/sw/deal.II/contrib/umfpack/UMFPACK/Include
-I/home/it2/max/sw/deal.II/contrib/umfpack/AMD/Include
-I/home/it2/max/sw/deal.II/contrib -I/home/it2/max/sw/deal.II/include
-I/home/it2/max/sw/petsc-3.2-p7/include
-I/home/it2/max/sw/petsc-3.2-p7/arch-linux2-c-openmpi-opt/include
-I/opt/openmpi/1.4.4/intel/include
-I/soft/openmpi/sle11.1/1.4.4/intel/include
-I/home/it2/max/sw/trilinos-10.4.2/include -c
/home/it2/max/sw/deal.II/source/lac/trilinos_precondition.cc -o
/home/it2/max/sw/deal.II/lib/optimized/lac_trilinos_precondition.o
Thanks for your help, and please let me know if there is additional
information that might help in tracking down the cause of this
problem.
Best Regards,
Max
> Re: [deal.II] problems with compilation of trilinos_precondition.cc
> Wolfgang Bangerth
> Sat, 25 Jun 2011 16:41:22 -0700
> Krishna,
> > I am running into problem with compilation of
> > trilinos_precondition.cc. I have tried deal.ii installation with
> > different version of trilinos (10.4.2,10.6.2,10.6.4), but the problem
> > persists.
> >
> > ======================optimized====== lac/trilinos_block_vector.cc
> > ======================optimized====== lac/trilinos_precondition.cc
> > ======================debug========== lac/sparsity_pattern.cc
> > /opt/software/numerics/deal.II/source/lac/trilinos_precondition.cc: In
> > member function ?void
> > dealii::TrilinosWrappers::PreconditionAMG::initialize(const
> > dealii::TrilinosWrappers::SparseMatrix&, const
> > dealii::TrilinosWrappers::PreconditionAMG::AdditionalData&)?:
> > /opt/software/numerics/deal.II/source/lac/trilinos_precondition.cc:519:
> > error: ?SetDefaults? is not a member of ?ML_Epetra?
> > [...]
> Have you figured out what causes this? I've installed deal.II and Trilinos
> many times and I've never seen this problem. ML_Epetra::SetDefaults is defined
> in the file ml_MultiLevelPreconditioner.h, which we do include in
> lac/trilinos_preconditioner.cc, so I'm not quite sure what may cause this
> problem...
> Best
>
> W.
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