Hello, I have compiled deal II without problems (see attached detailed.log file for settings) on a new machine with Ubuntu 16.04. However all the tests fail. It looks like there is some problem with linking libraries and it is related to openmpi (see quicktest.log file attached), but I can't figure out what it is.
I have installed libopenmpi-dev. In the attached file installed_pkg I copied the list I get if I run the command dpkg -l | grep mpi I have successfully installed and run deal ii in the past on 3 other machines and I never encountered this error. Please let me know if you have any suggestion or if you need any other info. Thank you, Giovanna -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. For more options, visit https://groups.google.com/d/optout.
[HANDLER_OUTPUT]
Test project /home/gio/development/dealii-8.4.1/build/tests/quick_tests
Start 1: step.debug
1/6 Test #1: step.debug .......................***Failed 15.05 sec
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_list_item_t_class'
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_class_initialize'
collect2: error: ld returned 1 exit status
make[7]: *** [tests/quick_tests/step.debug] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/step.debug.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/step.debug.run.dir/rule] Error 2
make[4]: *** [step.debug.run] Error 2
Test step.debug: BUILD
=============================== OUTPUT BEGIN ===============================
step.debug: BUILD failed. Output:
Scanning dependencies of target kill-step.debug-OK
[ 0%] Built target kill-step.debug-OK
[ 1%] Built target expand_instantiations_exe
[ 3%] Built target obj_opencascade.inst
[ 3%] Built target obj_opencascade.debug
[ 5%] Built target obj_muparser.debug
[ 10%] Built target obj_numerics.inst
[ 18%] Built target obj_numerics.debug
[ 27%] Built target obj_fe.inst
[ 37%] Built target obj_fe.debug
[ 39%] Built target obj_dofs.inst
[ 43%] Built target obj_dofs.debug
[ 46%] Built target obj_lac.inst
[ 56%] Built target obj_lac.debug
[ 58%] Built target obj_base.inst
[ 70%] Built target obj_base.debug
[ 75%] Built target obj_boost_serialization.debug
[ 82%] Built target obj_tbb.debug
[ 82%] Built target obj_boost_system.debug
[ 82%] Built target obj_boost_iostreams.debug
[ 84%] Built target obj_grid.inst
[ 89%] Built target obj_grid.debug
[ 89%] Built target obj_hp.inst
[ 91%] Built target obj_hp.debug
[ 93%] Built target obj_multigrid.inst
[ 94%] Built target obj_multigrid.debug
[ 96%] Built target obj_distributed.inst
[ 98%] Built target obj_distributed.debug
[ 98%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.debug
[ 98%] Built target obj_matrix_free.inst
[100%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
Scanning dependencies of target step.debug
[100%] Building CXX object tests/quick_tests/CMakeFiles/step.debug.dir/step.cc.o
[100%] Linking CXX executable step.debug
tests/quick_tests/CMakeFiles/step.debug.dir/build.make:111: recipe for target
'tests/quick_tests/step.debug' failed
CMakeFiles/Makefile2:3087: recipe for target
'tests/quick_tests/CMakeFiles/step.debug.dir/all' failed
CMakeFiles/Makefile2:3384: recipe for target
'tests/quick_tests/CMakeFiles/step.debug.run.dir/rule' failed
Makefile:1111: recipe for target 'step.debug.run' failed
step.debug: ****** BUILD failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/gio/development/dealii-8.4.1/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 2: step.release
2/6 Test #2: step.release .....................***Failed 13.81 sec
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_list_item_t_class'
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_class_initialize'
collect2: error: ld returned 1 exit status
make[7]: *** [tests/quick_tests/step.release] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/step.release.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/step.release.run.dir/rule] Error 2
make[4]: *** [step.release.run] Error 2
Test step.release: BUILD
=============================== OUTPUT BEGIN ===============================
step.release: BUILD failed. Output:
Scanning dependencies of target kill-step.release-OK
[ 0%] Built target kill-step.release-OK
[ 1%] Built target expand_instantiations_exe
[ 3%] Built target obj_opencascade.inst
[ 3%] Built target obj_opencascade.release
[ 10%] Built target obj_tbb.release
[ 12%] Built target obj_muparser.release
[ 17%] Built target obj_numerics.inst
[ 24%] Built target obj_numerics.release
[ 33%] Built target obj_fe.inst
[ 42%] Built target obj_fe.release
[ 43%] Built target obj_dofs.inst
[ 47%] Built target obj_dofs.release
[ 50%] Built target obj_lac.inst
[ 61%] Built target obj_lac.release
[ 63%] Built target obj_base.inst
[ 75%] Built target obj_base.release
[ 82%] Built target obj_boost_serialization.release
[ 84%] Built target obj_boost_iostreams.release
[ 84%] Built target obj_boost_system.release
[ 85%] Built target obj_grid.inst
[ 91%] Built target obj_grid.release
[ 91%] Built target obj_hp.inst
[ 92%] Built target obj_hp.release
[ 94%] Built target obj_multigrid.inst
[ 96%] Built target obj_multigrid.release
[ 98%] Built target obj_distributed.inst
[ 98%] Built target obj_distributed.release
[ 98%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.release
[ 98%] Built target obj_matrix_free.inst
[ 98%] Built target obj_matrix_free.release
[ 98%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.release
[100%] Built target deal_II
Scanning dependencies of target step.release
[100%] Building CXX object
tests/quick_tests/CMakeFiles/step.release.dir/step.cc.o
[100%] Linking CXX executable step.release
tests/quick_tests/CMakeFiles/step.release.dir/build.make:111: recipe for target
'tests/quick_tests/step.release' failed
CMakeFiles/Makefile2:3571: recipe for target
'tests/quick_tests/CMakeFiles/step.release.dir/all' failed
CMakeFiles/Makefile2:3287: recipe for target
'tests/quick_tests/CMakeFiles/step.release.run.dir/rule' failed
Makefile:1072: recipe for target 'step.release.run' failed
step.release: ****** BUILD failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/gio/development/dealii-8.4.1/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 3: affinity.debug
3/6 Test #3: affinity.debug ...................***Failed 10.57 sec
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_list_item_t_class'
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_class_initialize'
collect2: error: ld returned 1 exit status
make[7]: *** [tests/quick_tests/affinity.debug] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/affinity.debug.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/affinity.debug.run.dir/rule] Error 2
make[4]: *** [affinity.debug.run] Error 2
Test affinity.debug: BUILD
=============================== OUTPUT BEGIN ===============================
affinity.debug: BUILD failed. Output:
Scanning dependencies of target kill-affinity.debug-OK
[ 0%] Built target kill-affinity.debug-OK
[ 1%] Built target expand_instantiations_exe
[ 3%] Built target obj_opencascade.inst
[ 3%] Built target obj_opencascade.debug
[ 5%] Built target obj_muparser.debug
[ 10%] Built target obj_numerics.inst
[ 18%] Built target obj_numerics.debug
[ 27%] Built target obj_fe.inst
[ 37%] Built target obj_fe.debug
[ 39%] Built target obj_dofs.inst
[ 43%] Built target obj_dofs.debug
[ 46%] Built target obj_lac.inst
[ 56%] Built target obj_lac.debug
[ 58%] Built target obj_base.inst
[ 70%] Built target obj_base.debug
[ 75%] Built target obj_boost_serialization.debug
[ 82%] Built target obj_tbb.debug
[ 82%] Built target obj_boost_system.debug
[ 82%] Built target obj_boost_iostreams.debug
[ 84%] Built target obj_grid.inst
[ 89%] Built target obj_grid.debug
[ 89%] Built target obj_hp.inst
[ 91%] Built target obj_hp.debug
[ 93%] Built target obj_multigrid.inst
[ 94%] Built target obj_multigrid.debug
[ 96%] Built target obj_distributed.inst
[ 98%] Built target obj_distributed.debug
[ 98%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.debug
[ 98%] Built target obj_matrix_free.inst
[100%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
Scanning dependencies of target affinity.debug
[100%] Building CXX object
tests/quick_tests/CMakeFiles/affinity.debug.dir/affinity.cc.o
[100%] Linking CXX executable affinity.debug
tests/quick_tests/CMakeFiles/affinity.debug.dir/build.make:111: recipe for
target 'tests/quick_tests/affinity.debug' failed
CMakeFiles/Makefile2:3345: recipe for target
'tests/quick_tests/CMakeFiles/affinity.debug.dir/all' failed
CMakeFiles/Makefile2:3319: recipe for target
'tests/quick_tests/CMakeFiles/affinity.debug.run.dir/rule' failed
Makefile:1085: recipe for target 'affinity.debug.run' failed
affinity.debug: ****** BUILD failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/gio/development/dealii-8.4.1/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 4: mpi.debug
4/6 Test #4: mpi.debug ........................***Failed 10.80 sec
/home/gio/development/dealii-8.4.1/tests/quick_tests/mpi.cc: In function ‘int
main(int, char**)’:
/home/gio/development/dealii-8.4.1/tests/quick_tests/mpi.cc:43:7: warning:
variable ‘err’ set but not used [-Wunused-but-set-variable]
int err;
^
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_list_item_t_class'
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_class_initialize'
collect2: error: ld returned 1 exit status
make[7]: *** [tests/quick_tests/mpi.debug] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/mpi.debug.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/mpi.debug.run.dir/rule] Error 2
make[4]: *** [mpi.debug.run] Error 2
Test mpi.debug: BUILD
=============================== OUTPUT BEGIN ===============================
mpi.debug: BUILD failed. Output:
Scanning dependencies of target kill-mpi.debug-OK
[ 0%] Built target kill-mpi.debug-OK
[ 1%] Built target expand_instantiations_exe
[ 3%] Built target obj_opencascade.inst
[ 3%] Built target obj_opencascade.debug
[ 5%] Built target obj_muparser.debug
[ 10%] Built target obj_numerics.inst
[ 18%] Built target obj_numerics.debug
[ 27%] Built target obj_fe.inst
[ 37%] Built target obj_fe.debug
[ 39%] Built target obj_dofs.inst
[ 43%] Built target obj_dofs.debug
[ 46%] Built target obj_lac.inst
[ 56%] Built target obj_lac.debug
[ 58%] Built target obj_base.inst
[ 70%] Built target obj_base.debug
[ 75%] Built target obj_boost_serialization.debug
[ 82%] Built target obj_tbb.debug
[ 82%] Built target obj_boost_system.debug
[ 82%] Built target obj_boost_iostreams.debug
[ 84%] Built target obj_grid.inst
[ 89%] Built target obj_grid.debug
[ 89%] Built target obj_hp.inst
[ 91%] Built target obj_hp.debug
[ 93%] Built target obj_multigrid.inst
[ 94%] Built target obj_multigrid.debug
[ 96%] Built target obj_distributed.inst
[ 98%] Built target obj_distributed.debug
[ 98%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.debug
[ 98%] Built target obj_matrix_free.inst
[100%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
Scanning dependencies of target mpi.debug
[100%] Building CXX object tests/quick_tests/CMakeFiles/mpi.debug.dir/mpi.cc.o
[100%] Linking CXX executable mpi.debug
tests/quick_tests/CMakeFiles/mpi.debug.dir/build.make:111: recipe for target
'tests/quick_tests/mpi.debug' failed
CMakeFiles/Makefile2:3120: recipe for target
'tests/quick_tests/CMakeFiles/mpi.debug.dir/all' failed
CMakeFiles/Makefile2:3416: recipe for target
'tests/quick_tests/CMakeFiles/mpi.debug.run.dir/rule' failed
Makefile:1124: recipe for target 'mpi.debug.run' failed
mpi.debug: ****** BUILD failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/gio/development/dealii-8.4.1/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 5: tbb.debug
5/6 Test #5: tbb.debug ........................***Failed 9.63 sec
/home/gio/development/dealii-8.4.1/tests/quick_tests/tbb.cc:50:29: warning:
unused parameter ‘scratch’ [-Wunused-parameter]
scratch_data &scratch,
^
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_list_item_t_class'
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_class_initialize'
collect2: error: ld returned 1 exit status
make[7]: *** [tests/quick_tests/tbb.debug] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/tbb.debug.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/tbb.debug.run.dir/rule] Error 2
make[4]: *** [tbb.debug.run] Error 2
Test tbb.debug: BUILD
=============================== OUTPUT BEGIN ===============================
tbb.debug: BUILD failed. Output:
Scanning dependencies of target kill-tbb.debug-OK
[ 0%] Built target kill-tbb.debug-OK
[ 1%] Built target expand_instantiations_exe
[ 3%] Built target obj_opencascade.inst
[ 3%] Built target obj_opencascade.debug
[ 5%] Built target obj_muparser.debug
[ 10%] Built target obj_numerics.inst
[ 18%] Built target obj_numerics.debug
[ 27%] Built target obj_fe.inst
[ 37%] Built target obj_fe.debug
[ 39%] Built target obj_dofs.inst
[ 43%] Built target obj_dofs.debug
[ 46%] Built target obj_lac.inst
[ 56%] Built target obj_lac.debug
[ 58%] Built target obj_base.inst
[ 70%] Built target obj_base.debug
[ 75%] Built target obj_boost_serialization.debug
[ 82%] Built target obj_tbb.debug
[ 82%] Built target obj_boost_system.debug
[ 82%] Built target obj_boost_iostreams.debug
[ 84%] Built target obj_grid.inst
[ 89%] Built target obj_grid.debug
[ 89%] Built target obj_hp.inst
[ 91%] Built target obj_hp.debug
[ 93%] Built target obj_multigrid.inst
[ 94%] Built target obj_multigrid.debug
[ 96%] Built target obj_distributed.inst
[ 98%] Built target obj_distributed.debug
[ 98%] Built target obj_algorithms.inst
[ 98%] Built target obj_algorithms.debug
[ 98%] Built target obj_matrix_free.inst
[100%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
Scanning dependencies of target tbb.debug
[100%] Building CXX object tests/quick_tests/CMakeFiles/tbb.debug.dir/tbb.cc.o
[100%] Linking CXX executable tbb.debug
tests/quick_tests/CMakeFiles/tbb.debug.dir/build.make:111: recipe for target
'tests/quick_tests/tbb.debug' failed
CMakeFiles/Makefile2:3668: recipe for target
'tests/quick_tests/CMakeFiles/tbb.debug.dir/all' failed
CMakeFiles/Makefile2:3223: recipe for target
'tests/quick_tests/CMakeFiles/tbb.debug.run.dir/rule' failed
Makefile:1046: recipe for target 'tbb.debug.run' failed
tbb.debug: ****** BUILD failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/gio/development/dealii-8.4.1/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 6: step-petsc.debug
6/6 Test #6: step-petsc.debug .................***Failed 13.84 sec
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_list_item_t_class'
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_class_initialize'
collect2: error: ld returned 1 exit status
make[7]: *** [tests/quick_tests/step-petsc.debug] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/step-petsc.debug.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/step-petsc.debug.run.dir/rule] Error
2
make[4]: *** [step-petsc.debug.run] Error 2
Test step-petsc.debug: BUILD
=============================== OUTPUT BEGIN ===============================
step-petsc.debug: BUILD failed. Output:
Scanning dependencies of target kill-step-petsc.debug-OK
[ 0%] Built target kill-step-petsc.debug-OK
[ 1%] Built target expand_instantiations_exe
[ 3%] Built target obj_opencascade.inst
[ 3%] Built target obj_opencascade.debug
[ 5%] Built target obj_muparser.debug
[ 10%] Built target obj_numerics.inst
[ 18%] Built target obj_numerics.debug
[ 27%] Built target obj_fe.inst
[ 37%] Built target obj_fe.debug
[ 38%] Built target obj_dofs.inst
[ 42%] Built target obj_dofs.debug
[ 45%] Built target obj_lac.inst
[ 55%] Built target obj_lac.debug
[ 57%] Built target obj_base.inst
[ 69%] Built target obj_base.debug
[ 74%] Built target obj_boost_serialization.debug
[ 81%] Built target obj_tbb.debug
[ 81%] Built target obj_boost_system.debug
[ 81%] Built target obj_boost_iostreams.debug
[ 83%] Built target obj_grid.inst
[ 88%] Built target obj_grid.debug
[ 88%] Built target obj_hp.inst
[ 89%] Built target obj_hp.debug
[ 91%] Built target obj_multigrid.inst
[ 93%] Built target obj_multigrid.debug
[ 94%] Built target obj_distributed.inst
[ 96%] Built target obj_distributed.debug
[ 96%] Built target obj_algorithms.inst
[ 96%] Built target obj_algorithms.debug
[ 96%] Built target obj_matrix_free.inst
[ 98%] Built target obj_matrix_free.debug
[ 98%] Built target obj_meshworker.inst
[ 98%] Built target obj_meshworker.debug
[ 98%] Built target deal_II.g
Scanning dependencies of target step-petsc.debug
[ 98%] Building CXX object
tests/quick_tests/CMakeFiles/step-petsc.debug.dir/step-petsc.cc.o
[100%] Linking CXX executable step-petsc.debug
tests/quick_tests/CMakeFiles/step-petsc.debug.dir/build.make:111: recipe for
target 'tests/quick_tests/step-petsc.debug' failed
CMakeFiles/Makefile2:3506: recipe for target
'tests/quick_tests/CMakeFiles/step-petsc.debug.dir/all' failed
CMakeFiles/Makefile2:3545: recipe for target
'tests/quick_tests/CMakeFiles/step-petsc.debug.run.dir/rule' failed
Makefile:1176: recipe for target 'step-petsc.debug.run' failed
step-petsc.debug: ****** BUILD failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at
/home/gio/development/dealii-8.4.1/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
0% tests passed, 6 tests failed out of 6
Total Test time (real) = 73.71 sec
The following tests FAILED:
1 - step.debug (Failed)
2 - step.release (Failed)
3 - affinity.debug (Failed)
4 - mpi.debug (Failed)
5 - tbb.debug (Failed)
6 - step-petsc.debug (Failed)
[ERROR_MESSAGE]
Errors while running CTest
### # # deal.II configuration: # CMAKE_BUILD_TYPE: DebugRelease # BUILD_SHARED_LIBS: ON # CMAKE_INSTALL_PREFIX: /usr/local # CMAKE_SOURCE_DIR: /home/gio/development/dealii-8.4.1 # (version 8.4.1) # CMAKE_BINARY_DIR: /home/gio/development/dealii-8.4.1/build # CMAKE_CXX_COMPILER: GNU 5.3.1 on platform Linux x86_64 # /usr/bin/c++ # CMAKE_C_COMPILER: /usr/bin/cc # CMAKE_Fortran_COMPILER: /usr/bin/gfortran # CMAKE_GENERATOR: Unix Makefiles # # Base configuration (prior to feature configuration): # DEAL_II_CXX_FLAGS: -pedantic -fpic -Wall -Wextra -Wpointer-arith -Wwrite-strings -Wsynth -Wsign-compare -Wswitch -Woverloaded-virtual -Wno-long-long -Wno-deprecated-declarations -Wno-literal-suffix -fopenmp-simd -std=c++14 # DEAL_II_CXX_FLAGS_RELEASE: -O2 -funroll-loops -funroll-all-loops -fstrict-aliasing # DEAL_II_CXX_FLAGS_DEBUG: -Og -ggdb -Wa,--compress-debug-sections # DEAL_II_LINKER_FLAGS: -Wl,--as-needed -rdynamic -fuse-ld=gold # DEAL_II_LINKER_FLAGS_RELEASE: # DEAL_II_LINKER_FLAGS_DEBUG: -ggdb # DEAL_II_DEFINITIONS: # DEAL_II_DEFINITIONS_RELEASE: # DEAL_II_DEFINITIONS_DEBUG: DEBUG # DEAL_II_USER_DEFINITIONS: # DEAL_II_USER_DEFINITIONS_REL: # DEAL_II_USER_DEFINITIONS_DEB: DEBUG # DEAL_II_INCLUDE_DIRS # DEAL_II_USER_INCLUDE_DIRS: # DEAL_II_BUNDLED_INCLUDE_DIRS: # DEAL_II_LIBRARIES: m # DEAL_II_LIBRARIES_RELEASE: # DEAL_II_LIBRARIES_DEBUG: # # Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION = ON): # ( DEAL_II_WITH_64BIT_INDICES = OFF ) # ( DEAL_II_WITH_ARPACK = OFF ) # DEAL_II_WITH_BOOST set up with bundled packages # BOOST_CXX_FLAGS = -Wno-unused-local-typedefs # BOOST_BUNDLED_INCLUDE_DIRS = /home/gio/development/dealii-8.4.1/bundled/boost-1.56.0/include # BOOST_LIBRARIES = rt # ( DEAL_II_WITH_BZIP2 = OFF ) # DEAL_II_WITH_CXX11 = ON # DEAL_II_WITH_CXX14 = ON # ( DEAL_II_WITH_HDF5 = OFF ) # DEAL_II_WITH_LAPACK set up with external dependencies # LAPACK_LINKER_FLAGS = # LAPACK_LIBRARIES = /usr/lib/liblapack.so;/usr/lib/libblas.so;gfortran;quadmath;m;c # DEAL_II_WITH_METIS set up with external dependencies # METIS_VERSION = 5.1.0 # METIS_INCLUDE_DIRS = /usr/include # METIS_USER_INCLUDE_DIRS = /usr/include # METIS_LIBRARIES = /usr/lib/x86_64-linux-gnu/libmetis.so;/usr/lib/openmpi/lib/libmpi.so # DEAL_II_WITH_MPI set up with external dependencies # MPI_VERSION = 3.0 # OMPI_VERSION = 1.0.2 # MPI_C_COMPILER = /usr/bin/mpicc # MPI_CXX_COMPILER = /usr/bin/mpicxx # MPI_Fortran_COMPILER = /usr/bin/mpif90 # MPI_CXX_FLAGS = # MPI_LINKER_FLAGS = -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags # MPI_INCLUDE_DIRS = /usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi # MPI_USER_INCLUDE_DIRS = /usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi # MPI_LIBRARIES = /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi_usempif08.so;/usr/lib/openmpi/lib/libmpi_usempi_ignore_tkr.so;/usr/lib/openmpi/lib/libmpi_mpifh.so;/usr/lib/openmpi/lib/libmpi.so # DEAL_II_WITH_MUPARSER set up with bundled packages # MUPARSER_BUNDLED_INCLUDE_DIRS = /home/gio/development/dealii-8.4.1/bundled/muparser_v2_2_4//include # ( DEAL_II_WITH_NETCDF = OFF ) # ( DEAL_II_WITH_OPENCASCADE = OFF ) # ( DEAL_II_WITH_P4EST = OFF ) # DEAL_II_WITH_PETSC set up with external dependencies # PETSC_VERSION = 3.6.2.0 # PETSC_INCLUDE_DIRS = /usr/include/petsc # PETSC_USER_INCLUDE_DIRS = /usr/include/petsc # PETSC_LIBRARIES = /usr/lib/x86_64-linux-gnu/libpetsc.so # ( DEAL_II_WITH_SLEPC = OFF ) # DEAL_II_WITH_THREADS set up with bundled packages # THREADS_CXX_FLAGS = -Wno-parentheses # THREADS_LINKER_FLAGS = -pthread # THREADS_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1 # THREADS_USER_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1 # THREADS_BUNDLED_INCLUDE_DIRS = /home/gio/development/dealii-8.4.1/bundled/tbb41_20130401oss/include # THREADS_LIBRARIES = dl # ( DEAL_II_WITH_TRILINOS = OFF ) # DEAL_II_WITH_UMFPACK set up with external dependencies # UMFPACK_VERSION = 5.7.1 # UMFPACK_LINKER_FLAGS = # UMFPACK_INCLUDE_DIRS = /usr/include/suitesparse # UMFPACK_USER_INCLUDE_DIRS = /usr/include/suitesparse # UMFPACK_LIBRARIES = /usr/lib/x86_64-linux-gnu/libumfpack.so;/usr/lib/x86_64-linux-gnu/libcholmod.so;/usr/lib/x86_64-linux-gnu/libccolamd.so;/usr/lib/x86_64-linux-gnu/libcolamd.so;/usr/lib/x86_64-linux-gnu/libcamd.so;/usr/lib/x86_64-linux-gnu/libamd.so;/usr/lib/x86_64-linux-gnu/libmetis.so;/usr/lib/openmpi/lib/libmpi.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;gfortran;quadmath;m;c;rt # DEAL_II_WITH_ZLIB set up with external dependencies # ZLIB_VERSION = 1.2.8 # ZLIB_INCLUDE_DIRS = /usr/include # ZLIB_LIBRARIES = /usr/lib/x86_64-linux-gnu/libz.so # # Component configuration: # ( DEAL_II_COMPONENT_DOCUMENTATION = OFF ) # DEAL_II_COMPONENT_EXAMPLES # ( DEAL_II_COMPONENT_PACKAGE = OFF ) # ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF ) # ###
installed_pkg
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