The next step as per Wolfgang:
sudo apt-get install libopenmpi-dev
Attempting making PETCs-3.6.4 from source after deleting directory and
unzipping source.
./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran
--with-mpi-dir=/usr/lib/openmpi
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
TESTING: FortranMPICheck from
config.packages.MPI(config/BuildSystem/config/packages/MPI.py:365)
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
details):
-------------------------------------------------------------------------------
Fortran error! mpi_init() could not be located!
*******************************************************************************
trying libmpich-dev
sudo apt-get install libmpich-dev (12.1.0)
Reattempting making PETCs-3.6.4 from source after deleting directory and
unzipping source.
./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran
--with-mpi-dir=/usr/lib/mpich
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
TESTING: FortranMPICheck from
config.packages.MPI(config/BuildSystem/config/packages/MPI.py:365)
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
details):
-------------------------------------------------------------------------------
Fortran error! mpi_init() could not be located!
*******************************************************************************
Giving up on making PETCs-3.6.4 from source
============================================================================================
sudo apt-get install petsc-dev (3.6.2)
Expand dealii-8.4.1.tar.gz to dealii-8.4.1-PETSc
cd /dealii-8.4.1-PETSc
mkdir build
cd build
cmake -DCMAKE_INSTALL_PREFIX=/home/pgriffin/mylibs/dealii-8.4.1-PETSc
-DDEAL_II_WITH_MPI=ON -DDEAL_II_WITH_PETSC=ON ../
make -j8 install
make test
The results of the test are:
0% tests passed, 6 tests failed out of 6
Total Test time (real) = 92.47 sec
The following tests FAILED:
1 - step.debug (Failed)
2 - step.release (Failed)
3 - affinity.debug (Failed)
4 - mpi.debug (Failed)
5 - tbb.debug (Failed)
6 - step-petsc.debug (Failed)
Errors while running CTest
all of the errors are of the form:
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_list_item_t_class'
/usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
'opal_class_initialize'
CMakeFiles/Makefile2:3506: recipe for target
'tests/quick_tests/CMakeFiles/step-petsc.debug.dir/all' failed
CMakeFiles/Makefile2:3545: recipe for target
'tests/quick_tests/CMakeFiles/step-petsc.debug.run.dir/rule' failed
============================================================================================
Attempting with mpich-dev
Expand dealii-8.4.1.tar.gz to dealii-8.4.1-PETSc
cd /dealii-8.4.1-PETSc
mkdir build
cd build
cmake -DCMAKE_INSTALL_PREFIX=/home/pgriffin/mylibs/dealii-8.4.1-PETSc
-DMPI_DIR=/usr/lib/mpich -DMPI_ARCH=x86_64 -DDEAL_II_WITH_MPI=ON
-DDEAL_II_WITH_PETSC=ON ../
-DMPI_DIR=/usr/lib/mpich does not seem to override dealii install script
from using openmpi-dev, see attached with_mpich.txt.
The mpich libraries are in /usr/lib with a link to them in /usr/lib/mpich.
However the openmpi-dev libs are not in /usr/lib.
The script is using in /usr/lib/openmpi, there are no links in
/usr/lib/openmpi.
-DMPI_DIR=/usr/lib/mpich -DMPI_ARCH=x86_64 does not appear to be working to
override openmpi.
Is my inteperetation of the instructions correct, or do I have to remove
openmpi-dev.
don't necessarily need it for what I'm doing put could have for something
else the way everything doesn't work well together.
Thanks again
Pete Griffin
On Sunday, July 10, 2016 at 10:54:54 PM UTC-4, Pete Griffin wrote:
>
> I am trying to get PETSc running with dealii-8.4.1. (on Ubuntu 16.04)
> Reading the documentation it looks
> like I don't need to have MPI. (???) I downloaded petsc-3.6.4 and most
> recently compiled it with:
>
> ./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran
> --download-fblaslapack --with-mpi=0
>
> This resulted in the following being created in
> petsc-3.6.4/arch-linux2-c-debug:
>
> ls -R lib
>
> lib:
> libfblas.a libflapack.a libpetsc.so libpetsc.so.3.6 libpetsc.so.3.6.4
> petsc pkgconfig
>
> lib/petsc:
> conf
>
> lib/petsc/conf:
> configure.log error.log files make.log PETScConfig.cmake
> petscvariables reconfigure-arch-linux2-c-debug.py
> configure.log.bkp fblaslapack gmake.log modules petscrules
> RDict.db test.log
>
> lib/petsc/conf/modules:
> petsc
>
> lib/petsc/conf/modules/petsc:
> 3.6.4
>
> lib/pkgconfig:
> PETSc.pc
>
> and
>
> ls -R include/
>
> include/:
> mpi.mod petscdef.mod petscdm.mod petscksp.mod
> petscpcdef.mod petscsys.mod
> petscaodef.mod petscdmcomposite.mod petscfix.h
> petscmachineinfo.h petscpc.mod petsctsdef.mod
> petscao.mod petscdmdadef.mod petscisdef.mod petscmatdef.mod
> petscsnesdef.mod petscts.mod
> petscconf.h petscdmda.mod petscis.mod petscmat.mod
> petscsnes.mod petscvecdef.mod
> petscconfiginfo.h petscdmdef.mod petsckspdef.mod petsc.mod
> petscsysdef.mod petscvec.mod
>
> Originally I compiled without the --with-mpi=0 and mpi libraries were
> created. The MPI version
> did not work! Since I am running on a single computer MPI was not needed
> and tried without it.
>
>
> =================================================================================================
>
> The basic error is, with full details below:
>
> -- Found PETSC
> -- Could not find a sufficient PETSc installation: PETSc has to be
> configured with the same MPI configuration as deal.II.
> -- DEAL_II_WITH_PETSC has unmet external dependencies.
> CMake Error at cmake/configure/configure_3_petsc.cmake:110 (MESSAGE):
>
>
> Could not find the petsc library!
>
> Could not find a sufficient PETSc installation:
>
> PETSc has to be configured with the same MPI configuration as deal.II,
> but
> found:
>
> DEAL_II_WITH_MPI = OFF
> PETSC_WITH_MPI = (NOT FALSE)
> ....
>
>
> I assume the -DDEAL_II_WITH_MPI=OFF switch would work since I created
> PETsc with
> --with-mpi=0 and since mpi files were not created.
>
>
>
> Thanks, Pete Griffin
>
>
>
> =================================================================================================
> THE RESULTS OF cmake for dealii were as follows:
>
> =================================================================================================
>
> $ cd dealii-8.4.1-PETSc/
> /dealii-8.4.1-PETSc$ mkdir build
> /dealii-8.4.1-PETSc$ cd build
>
> =================================================================================================
> /dealii-8.4.1-PETSc/build$ cmake
> -DCMAKE_INSTALL_PREFIX=/home/pgriffin/mylibs/dealii-8.4.1-PETSc
> -DPETSC_DIR=/petsc-3.6.4/arch-linux2-c-debug/lib -DPETSC_ARCH=x86_64
> -DDEAL_II_WITH_MPI=OFF -DDEAL_II_WITH_PETSC=ON ../
>
> =================================================================================================
> -- This is CMake 3.5.1
> --
> -- Include /dealii-8.4.1-PETSc/cmake/setup_external_macros.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_enable_if_supported.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_find_file.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_setup_target.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_insource_setup_target.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_add_flags.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_add_dependencies.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_invoke_autopilot.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_push_cmake_required.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_enable_language_optional.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_filter_system_libraries.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_purge_feature.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_switch_library_preference.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_remove_duplicates.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_check_cxx_compiler_bug.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_query_git_information.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_clear_cmake_required.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_set_if_empty.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_expand_instantiations.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_reset_cmake_required.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_replace_flag.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_register_feature.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_find_package.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_find_system_library.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_package_handle.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_verbose_include.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_add_library.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_item_matches.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_configure_feature.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_to_string.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_pickup_tests.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_to_string_and_add_prefix.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_strip_flag.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_initialize_cached_variables.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_add_definitions.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_find_path.cmake
> -- Include
> /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_find_library.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_add_test.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_check_mpi_interface.cmake
> -- Include /dealii-8.4.1-PETSc/cmake/macros/macro_enable_if_links.cmake
> --
> -- Include /dealii-8.4.1-PETSc/cmake/setup_cached_variables.cmake
> -- The CXX compiler identification is GNU 5.3.1
> -- The C compiler identification is GNU 5.3.1
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Check for working C compiler: /usr/bin/cc
> -- Check for working C compiler: /usr/bin/cc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- The Fortran compiler identification is GNU 5.3.1
> -- Check for working Fortran compiler: /usr/bin/gfortran
> -- Check for working Fortran compiler: /usr/bin/gfortran -- works
> -- Detecting Fortran compiler ABI info
> -- Detecting Fortran compiler ABI info - done
> -- Checking whether /usr/bin/gfortran supports Fortran 90
> -- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
> --
> -- Include /dealii-8.4.1-PETSc/cmake/setup_deal_ii.cmake
> --
> -- Include /dealii-8.4.1-PETSc/cmake/setup_compiler_flags.cmake
> --
> -- Include /dealii-8.4.1-PETSc/cmake/setup_compiler_flags_gnu.cmake
> -- Performing Test DEAL_II_HAVE_FLAG_pedantic
> -- Performing Test DEAL_II_HAVE_FLAG_pedantic - Success
> -- Performing Test DEAL_II_HAVE_FLAG_fpic
> -- Performing Test DEAL_II_HAVE_FLAG_fpic - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed
> -- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wall
> -- Performing Test DEAL_II_HAVE_FLAG_Wall - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wextra
> -- Performing Test DEAL_II_HAVE_FLAG_Wextra - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith
> -- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings
> -- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wsynth
> -- Performing Test DEAL_II_HAVE_FLAG_Wsynth - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare
> -- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wswitch
> -- Performing Test DEAL_II_HAVE_FLAG_Wswitch - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual
> -- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wlong_long
> -- Performing Test DEAL_II_HAVE_FLAG_Wlong_long - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations
> -- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix
> -- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix - Success
> -- Performing Test DEAL_II_HAVE_FLAG_funroll_loops
> -- Performing Test DEAL_II_HAVE_FLAG_funroll_loops - Success
> -- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops
> -- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops - Success
> -- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing
> -- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Og
> -- Performing Test DEAL_II_HAVE_FLAG_Og - Success
> -- Performing Test DEAL_II_HAVE_FLAG_ggdb
> -- Performing Test DEAL_II_HAVE_FLAG_ggdb - Success
> --
> -- Include /dealii-8.4.1-PETSc/bundled/setup_bundled.cmake
> --
> -- Include
> /dealii-8.4.1-PETSc/cmake/checks/check_01_compiler_features.cmake
> -- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS
> -- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS - Success
> -- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK
> -- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK - Success
> -- Test successful, do not define DEAL_II_VECTOR_ITERATOR_IS_POINTER
> -- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT
> -- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT - Success
> -- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE
> -- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE - Success
> -- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE
> -- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE - Success
> -- Performing Test DEAL_II_HAVE_FLAG_rdynamic
> -- Performing Test DEAL_II_HAVE_FLAG_rdynamic - Success
> -- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER
> -- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER - Success
> -- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION
> -- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections
> -- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections - Success
> -- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED
> -- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED - Success
> -- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE
> -- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE - Success
> -- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA
> -- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA - Success
> -- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD
> -- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD - Success
> --
> -- Include /dealii-8.4.1-PETSc/cmake/checks/check_01_cpu_features.cmake
> -- Check if the system is big endian
> -- Searching 16 bit integer
> -- Looking for sys/types.h
> -- Looking for sys/types.h - found
> -- Looking for stdint.h
> -- Looking for stdint.h - found
> -- Looking for stddef.h
> -- Looking for stddef.h - found
> -- Check size of unsigned short
> -- Check size of unsigned short - done
> -- Using unsigned short
> -- Check if the system is big endian - little endian
> -- Performing Test DEAL_II_HAVE_SSE2
> -- Performing Test DEAL_II_HAVE_SSE2 - Success
> -- Performing Test DEAL_II_HAVE_AVX
> -- Performing Test DEAL_II_HAVE_AVX - Failed
> -- Performing Test DEAL_II_HAVE_AVX512
> -- Performing Test DEAL_II_HAVE_AVX512 - Failed
> -- Performing Test DEAL_II_HAVE_OPENMP_SIMD
> -- Performing Test DEAL_II_HAVE_OPENMP_SIMD - Success
> --
> -- Include /dealii-8.4.1-PETSc/cmake/checks/check_01_cxx_features.cmake
> -- Performing Test DEAL_II_HAVE_FLAG_stdcxx14
> -- Performing Test DEAL_II_HAVE_FLAG_stdcxx14 - Success
> -- Using C++ version flag "-std=c++14"
> -- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE
> -- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE - Success
> -- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK
> -- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK - Success
> -- Using C++ version flag "-std=c++14"
> -- Performing Test DEAL_II_HAVE_CXX11_ARRAY
> -- Performing Test DEAL_II_HAVE_CXX11_ARRAY - Success
> -- Performing Test DEAL_II_HAVE_CXX11_CONDITION_VARIABLE
> -- Performing Test DEAL_II_HAVE_CXX11_CONDITION_VARIABLE - Success
> -- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL
> -- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL - Success
> -- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_GCCBUG35569_OK
> -- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_GCCBUG35569_OK - Success
> -- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK
> -- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK - Success
> -- Performing Test DEAL_II_HAVE_CXX11_SHARED_PTR
> -- Performing Test DEAL_II_HAVE_CXX11_SHARED_PTR - Success
> -- Performing Test DEAL_II_HAVE_CXX11_THREAD
> -- Performing Test DEAL_II_HAVE_CXX11_THREAD - Success
> -- Performing Test DEAL_II_HAVE_CXX11_MUTEX
> -- Performing Test DEAL_II_HAVE_CXX11_MUTEX - Success
> -- Performing Test DEAL_II_HAVE_CXX11_TUPLE
> -- Performing Test DEAL_II_HAVE_CXX11_TUPLE - Success
> -- Performing Test DEAL_II_HAVE_CXX11_TYPE_TRAITS
> -- Performing Test DEAL_II_HAVE_CXX11_TYPE_TRAITS - Success
> -- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK
> -- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK - Success
> -- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK
> -- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK - Success
> -- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK
> -- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK - Success
> -- DEAL_II_WITH_CXX11 successfully set up
> -- DEAL_II_WITH_CXX14 successfully set up
> -- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE
> -- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE - Success
> -- Performing Test DEAL_II_HAVE_STD_ISNAN
> -- Performing Test DEAL_II_HAVE_STD_ISNAN - Success
> -- Performing Test DEAL_II_HAVE_ISNAN
> -- Performing Test DEAL_II_HAVE_ISNAN - Success
> -- Performing Test DEAL_II_HAVE_UNDERSCORE_ISNAN
> -- Performing Test DEAL_II_HAVE_UNDERSCORE_ISNAN - Failed
> -- Performing Test DEAL_II_HAVE_ISFINITE
> -- Performing Test DEAL_II_HAVE_ISFINITE - Success
> -- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS
> -- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS - Success
> -- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS
> -- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS - Failed
> --
> -- Include /dealii-8.4.1-PETSc/cmake/checks/check_02_system_features.cmake
> -- Looking for C++ include sys/resource.h
> -- Looking for C++ include sys/resource.h - found
> -- Looking for C++ include sys/time.h
> -- Looking for C++ include sys/time.h - found
> -- Looking for C++ include sys/times.h
> -- Looking for C++ include sys/times.h - found
> -- Looking for times
> -- Looking for times - found
> -- Looking for C++ include sys/types.h
> -- Looking for C++ include sys/types.h - found
> -- Looking for C++ include unistd.h
> -- Looking for C++ include unistd.h - found
> -- Looking for gethostname
> -- Looking for gethostname - found
> -- Looking for getpid
> -- Looking for getpid - found
> -- Performing Test m_LIBRARY
> -- Performing Test m_LIBRARY - Success
> -- Looking for jn
> -- Looking for jn - found
> --
> -- Include /dealii-8.4.1-PETSc/cmake/checks/check_03_compiler_bugs.cmake
> -- Performing Test DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG_OK
> -- Performing Test DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG_OK - Success
> -- Test successful, do not define DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG
> -- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK
> -- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK - Success
> -- Test successful, do not define DEAL_II_TEMPL_SPEC_FRIEND_BUG
> -- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK
> -- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK - Success
> -- Test successful, do not define DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG
> -- Performing Test DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG_OK
> -- Performing Test DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG_OK - Success
> -- Test successful, do not define DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG
> -- Performing Test DEAL_II_EXPLICIT_CONSTRUCTOR_BUG
> -- Performing Test DEAL_II_EXPLICIT_CONSTRUCTOR_BUG - Failed
> -- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK
> -- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK - Success
> -- Test successful, do not define DEAL_II_CONST_MEMBER_DEDUCTION_BUG
> -- Performing Test DEAL_II_TYPE_QUALIFIER_BUG_OK
> -- Performing Test DEAL_II_TYPE_QUALIFIER_BUG_OK - Success
> -- Test successful, do not define DEAL_II_TYPE_QUALIFIER_BUG
> -- Performing Test DEAL_II_BOOST_BIND_COMPILER_BUG_OK
> -- Performing Test DEAL_II_BOOST_BIND_COMPILER_BUG_OK - Failed
> -- Test unsuccessful, define DEAL_II_BOOST_BIND_COMPILER_BUG
> -- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK
> -- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK - Success
> -- Test successful, do not define DEAL_II_BIND_NO_CONST_OP_PARENTHESES
> -- Performing Test DEAL_II_ICC_SFINAE_BUG_OK
> -- Performing Test DEAL_II_ICC_SFINAE_BUG_OK - Success
> -- Test successful, do not define DEAL_II_ICC_SFINAE_BUG
> --
> -- Include /dealii-8.4.1-PETSc/cmake/checks/check_03_generator_bugs.cmake
> --
> -- Include /dealii-8.4.1-PETSc/cmake/configure/configure_1_bzip2.cmake
> -- Could NOT find BZip2 (missing: BZIP2_LIBRARIES BZIP2_INCLUDE_DIR)
> -- BZIP2_LIBRARIES: *** Required variable "_bzip2_libraries" set to
> NOTFOUND ***
> -- BZIP2_INCLUDE_DIRS: *** Required variable "BZIP2_INCLUDE_DIR" set to
> NOTFOUND ***
> -- Could NOT find BZIP2
> -- DEAL_II_WITH_BZIP2 has unmet external dependencies.
> --
> -- Include /dealii-8.4.1-PETSc/cmake/configure/configure_1_lapack.cmake
> -- Looking for Fortran sgemm
> -- Looking for Fortran sgemm - found
> -- Looking for pthread.h
> -- Looking for pthread.h - found
> -- Looking for pthread_create
> -- Looking for pthread_create - not found
> -- Looking for pthread_create in pthreads
> -- Looking for pthread_create in pthreads - not found
> -- Looking for pthread_create in pthread
> -- Looking for pthread_create in pthread - found
> -- Found Threads: TRUE
> -- A library with BLAS API found.
> -- Looking for Fortran cheev
> -- Looking for Fortran cheev - found
> -- A library with LAPACK API found.
> -- Performing Test gfortran_LIBRARY
> -- Performing Test gfortran_LIBRARY - Success
> -- Performing Test quadmath_LIBRARY
> -- Performing Test quadmath_LIBRARY - Success
> -- Performing Test c_LIBRARY
> -- Performing Test c_LIBRARY - Success
> -- LAPACK_LIBRARIES:
> /usr/lib/liblapack.so;/usr/lib/libblas.so;/usr/lib/libblas.so;gfortran;m;quadmath;m;c
> -- LAPACK_LINKER_FLAGS:
> -- Found LAPACK
> -- Performing Test DEAL_II_HAVE_FLAG_pthread
> -- Performing Test DEAL_II_HAVE_FLAG_pthread - Success
> -- Performing Test LAPACK_SYMBOL_CHECK
> -- Performing Test LAPACK_SYMBOL_CHECK - Success
> -- DEAL_II_WITH_LAPACK successfully set up with external dependencies.
> --
> -- Include /dealii-8.4.1-PETSc/cmake/configure/configure_1_mpi.cmake
> -- DEAL_II_WITH_MPI is set to off.
> --
> -- Include /dealii-8.4.1-PETSc/cmake/configure/configure_1_threads.cmake
> -- TBB_LIBRARY not found! Call:
> -- FIND_LIBRARY(TBB_LIBRARY NAMES tbb HINTS PATH_SUFFIXES lib lib64
> lib)
> -- TBB_DEBUG_LIBRARY not found! Call:
> -- FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES
> lib lib64 lib)
> -- TBB_INCLUDE_DIR not found! Call:
> -- FIND_PATH(TBB_INCLUDE_DIR tbb/tbb_stddef.h HINTS PATH_SUFFIXES
> include include/tbb tbb)
> -- TBB_LIBRARIES: *** Required variable "TBB_LIBRARY" set to NOTFOUND ***
> -- TBB_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to
> NOTFOUND ***
> -- TBB_USER_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to
> NOTFOUND ***
> -- Could NOT find TBB
> -- DEAL_II_WITH_THREADS has unmet external dependencies.
> -- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS
> -- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS - Success
> -- Performing Test DEAL_II_HAVE_FLAG_Wparentheses
> -- Performing Test DEAL_II_HAVE_FLAG_Wparentheses - Success
> -- DEAL_II_WITH_THREADS successfully set up with bundled packages.
> --
> -- Include /dealii-8.4.1-PETSc/cmake/configure/configure_1_zlib.cmake
> -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8")
> -- ZLIB_VERSION: 1.2.8
> -- ZLIB_LIBRARIES: /usr/lib/x86_64-linux-gnu/libz.so
> -- ZLIB_INCLUDE_DIRS: /usr/include
> -- Found ZLIB
> -- DEAL_II_WITH_ZLIB successfully set up with external dependencies.
> --
> -- Include /dealii-8.4.1-PETSc/cmake/configure/configure_2_metis.cmake
> -- METIS_LIBRARY not found! Call:
> -- FIND_LIBRARY(METIS_LIBRARY NAMES metis HINTS PATH_SUFFIXES lib
> lib64 lib build/Linux-x86_64/libmetis)
> -- PARMETIS_LIBRARY not found! Call:
> -- FIND_LIBRARY(PARMETIS_LIBRARY NAMES parmetis HINTS NO_DEFAULT_PATH
> NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH
> NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
> -- METIS_INCLUDE_DIR not found! Call:
> -- FIND_PATH(METIS_INCLUDE_DIR metis.h HINTS PATH_SUFFIXES metis
> include/metis include)
> -- METIS_LIBRARIES: *** Required variable "METIS_LIBRARY" set to
> NOTFOUND ***
> -- METIS_INCLUDE_DIRS: *** Required variable "METIS_INCLUDE_DIR" set to
> NOTFOUND ***
> -- METIS_USER_INCLUDE_DIRS: *** Required variable "METIS_INCLUDE_DIR"
> set to NOTFOUND ***
> -- Could NOT find METIS
> -- DEAL_II_WITH_METIS has unmet external dependencies.
> --
> -- Include /dealii-8.4.1-PETSc/cmake/configure/configure_2_trilinos.cmake
> -- EPETRA_CONFIG_H not found! Call:
> -- FIND_FILE(EPETRA_CONFIG_H Epetra_config.h HINTS NO_DEFAULT_PATH
> NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH
> NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
> -- SACADO_CONFIG_H not found! Call:
> -- FIND_FILE(SACADO_CONFIG_H Sacado_config.h HINTS NO_DEFAULT_PATH
> NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH
> NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
> -- SACADO_CMATH_HPP not found! Call:
> -- FIND_FILE(SACADO_CMATH_HPP Sacado_cmath.hpp HINTS NO_DEFAULT_PATH
> NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH
> NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
> -- TRILINOS_LIBRARIES:
> -- TRILINOS_INCLUDE_DIRS: *** Required variable "Trilinos_INCLUDE_DIRS"
> empty ***
> -- TRILINOS_USER_INCLUDE_DIRS: *** Required variable
> "Trilinos_INCLUDE_DIRS" empty ***
> -- Could NOT find TRILINOS
> -- DEAL_II_WITH_TRILINOS has unmet external dependencies.
> --
> -- Include /dealii-8.4.1-PETSc/cmake/configure/configure_2_umfpack.cmake
> -- Found UMFPACK_INCLUDE_DIR
> -- Found AMD_INCLUDE_DIR
> -- Found SuiteSparse_config_INCLUDE_DIR
> -- Found UMFPACK_LIBRARY
> -- Found AMD_LIBRARY
> -- Found CHOLMOD_LIBRARY
> -- Found COLAMD_LIBRARY
> -- Found CCOLAMD_LIBRARY
> -- Found CAMD_LIBRARY
> -- Found SuiteSparse_config_LIBRARY
> -- Performing Test LAPACK_SUITESPARSECONFIG_WITH_PIC
> -- Performing Test LAPACK_SUITESPARSECONFIG_WITH_PIC - Failed
> -- Performing Test rt_LIBRARY
> -- Performing Test rt_LIBRARY - Success
> -- UMFPACK_VERSION: 5.7.1
> -- UMFPACK_LIBRARIES:
> /usr/lib/x86_64-linux-gnu/libumfpack.so;/usr/lib/x86_64-linux-gnu/libcholmod.so;/usr/lib/x86_64-linux-gnu/libccolamd.so;/usr/lib/x86_64-linux-gnu/libcolamd.so;/usr/lib/x86_64-linux-gnu/libcamd.so;/usr/lib/x86_64-linux-gnu/libamd.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;gfortran;quadmath;m;c;rt
> -- UMFPACK_INCLUDE_DIRS:
> /usr/include/suitesparse;/usr/include/suitesparse;/usr/include/suitesparse
> -- UMFPACK_USER_INCLUDE_DIRS:
> /usr/include/suitesparse;/usr/include/suitesparse;/usr/include/suitesparse
> -- UMFPACK_LINKER_FLAGS:
> -- Found UMFPACK
> -- DEAL_II_WITH_UMFPACK successfully set up with external dependencies.
> --
> -- Include /dealii-8.4.1-PETSc/cmake/configure/configure_3_petsc.cmake
> -- Found PETSC_LIBRARY
> -- Found PETSC_INCLUDE_DIR_ARCH
> -- Found PETSC_INCLUDE_DIR_COMMON
> -- PETSC_PETSCVARIABLES not found! Call:
> -- FIND_FILE(PETSC_PETSCVARIABLES NAMES petscvariables HINTS
> /petsc-3.6.4/arch-linux2-c-debug/lib/x86_64
> /petsc-3.6.4/arch-linux2-c-debug/lib PATH_SUFFIXES conf)
> -- PETSC_VERSION: 3.6.2.0
> -- PETSC_LIBRARIES: /petsc-3.6.4/arch-linux2-c-debug/lib/libpetsc.so
> -- PETSC_INCLUDE_DIRS: /usr/include/petsc;/usr/include/petsc
> -- PETSC_USER_INCLUDE_DIRS: /usr/include/petsc;/usr/include/petsc
> -- Found PETSC
> -- Could not find a sufficient PETSc installation: PETSc has to be
> configured with the same MPI configuration as deal.II.
> -- DEAL_II_WITH_PETSC has unmet external dependencies.
> CMake Error at cmake/configure/configure_3_petsc.cmake:110 (MESSAGE):
>
>
> Could not find the petsc library!
>
> Could not find a sufficient PETSc installation:
>
> PETSc has to be configured with the same MPI configuration as deal.II,
> but
> found:
>
> DEAL_II_WITH_MPI = OFF
> PETSC_WITH_MPI = (NOT FALSE)
>
>
>
> Please ensure that the petsc library version 3.0.0 or newer is installed
> on
> your computer and is configured with the same mpi options as deal.II
>
> If the library is not at a default location, either provide some hints
>
> for the autodetection:
>
> PETSc installed with --prefix=<...> to a destination:
>
> $ PETSC_DIR="..." cmake <...>
> $ cmake -DPETSC_DIR="..." <...>
>
> PETSc compiled in source tree:
>
> $ PETSC_DIR="..." PETSC_ARCH="..." cmake <...>
> $ cmake -DPETSC_DIR="..." -DPETSC_ARCH="..." <...>
>
> or set the relevant variables by hand in ccmake.
>
>
>
> Call Stack (most recent call first):
> build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1
> (FEATURE_PETSC_ERROR_MESSAGE)
> cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
> cmake/macros/macro_configure_feature.cmake:272 (RUN_COMMAND)
> cmake/configure/configure_3_petsc.cmake:129 (CONFIGURE_FEATURE)
> cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
> CMakeLists.txt:119 (VERBOSE_INCLUDE)
>
>
> -- Configuring incomplete, errors occurred!
> See also "/dealii-8.4.1-PETSc/build/CMakeFiles/CMakeOutput.log".
> See also "/dealii-8.4.1-PETSc/build/CMakeFiles/CMakeError.log".
>
>
> =======================================================================================================================
> Originally I tried (and numerous other combinations):
>
> sudo apt-get install libpetsc3.6.2-dev
> and
> sudo apt-get install libopenmpi-dev
>
> all work well til:
>
> make test
>
> when a number of errors including:
>
> /usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
> 'opal_list_item_t_class'
> /usr/lib/openmpi/lib/libmpi_cxx.so: error: undefined reference to
> 'opal_class_initialize'
>
> CMakeFiles/Makefile2:3087: recipe for target
> 'tests/quick_tests/CMakeFiles/step.debug.dir/all' failed
> CMakeFiles/Makefile2:3384: recipe for target
> 'tests/quick_tests/CMakeFiles/step.debug.run.dir/rule' failed
> Makefile:1111: recipe for target 'step.debug.run' failed
>
> CMakeFiles/Makefile2:3571: recipe for target
> 'tests/quick_tests/CMakeFiles/step.release.dir/all' failed
>
> resulted.
>
>
> sudo apt-get install libmpich-dev
> with
> sudo apt-get install libpetsc3.6.2-dev
> also had problems
>
>
> =====================================================================================================
>
>
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
---
You received this message because you are subscribed to the Google Groups
"deal.II User Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
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user@Ubuntu3:~/Documents/Zipstore2/dealii-8.4.1-PETSc/build$ rm -R *
user@Ubuntu3:~/Documents/Zipstore2/dealii-8.4.1-PETSc/build$ cmake
-DCMAKE_INSTALL_PREFIX=/home/user/mylibs/dealii-8.4.1-PETSc
-DMPI_DIR=/usr/lib/mpich -DMPI_ARCH=x86_64 -DDEAL_II_WITH_MPI=ON
-DDEAL_II_WITH_PETSC=ON ../
-- This is CMake 3.5.1
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/setup_external_macros.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_enable_if_supported.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_find_file.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_setup_target.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_insource_setup_target.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_add_flags.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_add_dependencies.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_invoke_autopilot.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_push_cmake_required.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_enable_language_optional.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_filter_system_libraries.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_purge_feature.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_switch_library_preference.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_remove_duplicates.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_check_cxx_compiler_bug.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_query_git_information.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_clear_cmake_required.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_set_if_empty.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_expand_instantiations.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_reset_cmake_required.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_replace_flag.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_register_feature.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_find_package.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_find_system_library.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_package_handle.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_verbose_include.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_add_library.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_item_matches.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_configure_feature.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_to_string.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_pickup_tests.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_to_string_and_add_prefix.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_strip_flag.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_initialize_cached_variables.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_add_definitions.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_find_path.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_find_library.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_deal_ii_add_test.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_check_mpi_interface.cmake
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/macros/macro_enable_if_links.cmake
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/setup_cached_variables.cmake
-- The CXX compiler identification is GNU 5.3.1
-- The C compiler identification is GNU 5.3.1
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- The Fortran compiler identification is GNU 5.3.1
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/setup_deal_ii.cmake
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/setup_compiler_flags.cmake
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/setup_compiler_flags_gnu.cmake
-- Performing Test DEAL_II_HAVE_FLAG_pedantic
-- Performing Test DEAL_II_HAVE_FLAG_pedantic - Success
-- Performing Test DEAL_II_HAVE_FLAG_fpic
-- Performing Test DEAL_II_HAVE_FLAG_fpic - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed
-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wall
-- Performing Test DEAL_II_HAVE_FLAG_Wall - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wextra
-- Performing Test DEAL_II_HAVE_FLAG_Wextra - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith
-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings
-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wsynth
-- Performing Test DEAL_II_HAVE_FLAG_Wsynth - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare
-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wswitch
-- Performing Test DEAL_II_HAVE_FLAG_Wswitch - Success
-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual
-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wlong_long
-- Performing Test DEAL_II_HAVE_FLAG_Wlong_long - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations
-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix
-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix - Success
-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops
-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops - Success
-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops
-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops - Success
-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing
-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing - Success
-- Performing Test DEAL_II_HAVE_FLAG_Og
-- Performing Test DEAL_II_HAVE_FLAG_Og - Success
-- Performing Test DEAL_II_HAVE_FLAG_ggdb
-- Performing Test DEAL_II_HAVE_FLAG_ggdb - Success
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/bundled/setup_bundled.cmake
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/checks/check_01_compiler_features.cmake
-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS
-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS - Success
-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK
-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK - Success
-- Test successful, do not define DEAL_II_VECTOR_ITERATOR_IS_POINTER
-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT
-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT - Success
-- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE
-- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE - Success
-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE
-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE - Success
-- Performing Test DEAL_II_HAVE_FLAG_rdynamic
-- Performing Test DEAL_II_HAVE_FLAG_rdynamic - Success
-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER
-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections
-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE - Success
-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA
-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA - Success
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD - Success
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/checks/check_01_cpu_features.cmake
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Performing Test DEAL_II_HAVE_SSE2
-- Performing Test DEAL_II_HAVE_SSE2 - Success
-- Performing Test DEAL_II_HAVE_AVX
-- Performing Test DEAL_II_HAVE_AVX - Failed
-- Performing Test DEAL_II_HAVE_AVX512
-- Performing Test DEAL_II_HAVE_AVX512 - Failed
-- Performing Test DEAL_II_HAVE_OPENMP_SIMD
-- Performing Test DEAL_II_HAVE_OPENMP_SIMD - Success
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/checks/check_01_cxx_features.cmake
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx14
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx14 - Success
-- Using C++ version flag "-std=c++14"
-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE
-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE - Success
-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK
-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK - Success
-- Using C++ version flag "-std=c++14"
-- Performing Test DEAL_II_HAVE_CXX11_ARRAY
-- Performing Test DEAL_II_HAVE_CXX11_ARRAY - Success
-- Performing Test DEAL_II_HAVE_CXX11_CONDITION_VARIABLE
-- Performing Test DEAL_II_HAVE_CXX11_CONDITION_VARIABLE - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_GCCBUG35569_OK
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_GCCBUG35569_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_SHARED_PTR
-- Performing Test DEAL_II_HAVE_CXX11_SHARED_PTR - Success
-- Performing Test DEAL_II_HAVE_CXX11_THREAD
-- Performing Test DEAL_II_HAVE_CXX11_THREAD - Success
-- Performing Test DEAL_II_HAVE_CXX11_MUTEX
-- Performing Test DEAL_II_HAVE_CXX11_MUTEX - Success
-- Performing Test DEAL_II_HAVE_CXX11_TUPLE
-- Performing Test DEAL_II_HAVE_CXX11_TUPLE - Success
-- Performing Test DEAL_II_HAVE_CXX11_TYPE_TRAITS
-- Performing Test DEAL_II_HAVE_CXX11_TYPE_TRAITS - Success
-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK - Success
-- DEAL_II_WITH_CXX11 successfully set up
-- DEAL_II_WITH_CXX14 successfully set up
-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE
-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE - Success
-- Performing Test DEAL_II_HAVE_STD_ISNAN
-- Performing Test DEAL_II_HAVE_STD_ISNAN - Success
-- Performing Test DEAL_II_HAVE_ISNAN
-- Performing Test DEAL_II_HAVE_ISNAN - Success
-- Performing Test DEAL_II_HAVE_UNDERSCORE_ISNAN
-- Performing Test DEAL_II_HAVE_UNDERSCORE_ISNAN - Failed
-- Performing Test DEAL_II_HAVE_ISFINITE
-- Performing Test DEAL_II_HAVE_ISFINITE - Success
-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS
-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS - Success
-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS
-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS - Failed
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/checks/check_02_system_features.cmake
-- Looking for C++ include sys/resource.h
-- Looking for C++ include sys/resource.h - found
-- Looking for C++ include sys/time.h
-- Looking for C++ include sys/time.h - found
-- Looking for C++ include sys/times.h
-- Looking for C++ include sys/times.h - found
-- Looking for times
-- Looking for times - found
-- Looking for C++ include sys/types.h
-- Looking for C++ include sys/types.h - found
-- Looking for C++ include unistd.h
-- Looking for C++ include unistd.h - found
-- Looking for gethostname
-- Looking for gethostname - found
-- Looking for getpid
-- Looking for getpid - found
-- Performing Test m_LIBRARY
-- Performing Test m_LIBRARY - Success
-- Looking for jn
-- Looking for jn - found
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/checks/check_03_compiler_bugs.cmake
-- Performing Test DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG_OK
-- Performing Test DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG_OK - Success
-- Test successful, do not define DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG
-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK
-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK - Success
-- Test successful, do not define DEAL_II_TEMPL_SPEC_FRIEND_BUG
-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK
-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK - Success
-- Test successful, do not define DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG
-- Performing Test DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG_OK
-- Performing Test DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG_OK - Success
-- Test successful, do not define DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG
-- Performing Test DEAL_II_EXPLICIT_CONSTRUCTOR_BUG
-- Performing Test DEAL_II_EXPLICIT_CONSTRUCTOR_BUG - Failed
-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK
-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK - Success
-- Test successful, do not define DEAL_II_CONST_MEMBER_DEDUCTION_BUG
-- Performing Test DEAL_II_TYPE_QUALIFIER_BUG_OK
-- Performing Test DEAL_II_TYPE_QUALIFIER_BUG_OK - Success
-- Test successful, do not define DEAL_II_TYPE_QUALIFIER_BUG
-- Performing Test DEAL_II_BOOST_BIND_COMPILER_BUG_OK
-- Performing Test DEAL_II_BOOST_BIND_COMPILER_BUG_OK - Failed
-- Test unsuccessful, define DEAL_II_BOOST_BIND_COMPILER_BUG
-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK
-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK - Success
-- Test successful, do not define DEAL_II_BIND_NO_CONST_OP_PARENTHESES
-- Performing Test DEAL_II_ICC_SFINAE_BUG_OK
-- Performing Test DEAL_II_ICC_SFINAE_BUG_OK - Success
-- Test successful, do not define DEAL_II_ICC_SFINAE_BUG
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/checks/check_03_generator_bugs.cmake
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_1_bzip2.cmake
-- Could NOT find BZip2 (missing: BZIP2_LIBRARIES BZIP2_INCLUDE_DIR)
-- BZIP2_LIBRARIES: *** Required variable "_bzip2_libraries" set to NOTFOUND
***
-- BZIP2_INCLUDE_DIRS: *** Required variable "BZIP2_INCLUDE_DIR" set to
NOTFOUND ***
-- Could NOT find BZIP2
-- DEAL_II_WITH_BZIP2 has unmet external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_1_lapack.cmake
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Performing Test gfortran_LIBRARY
-- Performing Test gfortran_LIBRARY - Success
-- Performing Test quadmath_LIBRARY
-- Performing Test quadmath_LIBRARY - Success
-- Performing Test c_LIBRARY
-- Performing Test c_LIBRARY - Success
-- LAPACK_LIBRARIES:
/usr/lib/liblapack.so;/usr/lib/libblas.so;/usr/lib/libblas.so;gfortran;m;quadmath;m;c
-- LAPACK_LINKER_FLAGS:
-- Found LAPACK
-- Performing Test DEAL_II_HAVE_FLAG_pthread
-- Performing Test DEAL_II_HAVE_FLAG_pthread - Success
-- Performing Test LAPACK_SYMBOL_CHECK
-- Performing Test LAPACK_SYMBOL_CHECK - Success
-- DEAL_II_WITH_LAPACK successfully set up with external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_1_mpi.cmake
-- Unable to determine MPI from MPI driver /usr/bin/cc
-- Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH)
-- Unable to determine MPI from MPI driver /usr/bin/c++
-- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH)
-- Unable to determine MPI from MPI driver /usr/bin/gfortran
-- Could NOT find MPI_Fortran (missing: MPI_Fortran_LIBRARIES
MPI_Fortran_INCLUDE_PATH)
-- MPI not found but DEAL_II_WITH_MPI is set to TRUE. Try again with more
aggressive search paths:
-- Found MPI_C: /usr/lib/openmpi/lib/libmpi.so
-- Found MPI_CXX:
/usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so
-- Found MPI_Fortran:
/usr/lib/openmpi/lib/libmpi_usempif08.so;/usr/lib/openmpi/lib/libmpi_usempi_ignore_tkr.so;/usr/lib/openmpi/lib/libmpi_mpifh.so;/usr/lib/openmpi/lib/libmpi.so
-- Performing Test MPI_HAVE_MPI_SEEK_SET
-- Performing Test MPI_HAVE_MPI_SEEK_SET - Success
-- Found MPI_MPI_H
-- MPI_VERSION: 3.0
-- MPI_LIBRARIES:
/usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libmpi_usempif08.so;/usr/lib/openmpi/lib/libmpi_usempi_ignore_tkr.so;/usr/lib/openmpi/lib/libmpi_mpifh.so;/usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libmpi.so
-- MPI_INCLUDE_DIRS:
/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi
-- MPI_USER_INCLUDE_DIRS:
/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent;/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2021/libevent/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi
-- MPI_CXX_FLAGS:
-- MPI_LINKER_FLAGS: -Wl,-rpath -Wl,/usr/lib/openmpi/lib
-Wl,--enable-new-dtags
-- Found MPI
-- DEAL_II_WITH_MPI successfully set up with external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_1_threads.cmake
-- TBB_LIBRARY not found! Call:
-- FIND_LIBRARY(TBB_LIBRARY NAMES tbb HINTS PATH_SUFFIXES lib lib64 lib)
-- TBB_DEBUG_LIBRARY not found! Call:
-- FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES lib
lib64 lib)
-- TBB_INCLUDE_DIR not found! Call:
-- FIND_PATH(TBB_INCLUDE_DIR tbb/tbb_stddef.h HINTS PATH_SUFFIXES include
include/tbb tbb)
-- TBB_LIBRARIES: *** Required variable "TBB_LIBRARY" set to NOTFOUND ***
-- TBB_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to NOTFOUND
***
-- TBB_USER_INCLUDE_DIRS: *** Required variable "TBB_INCLUDE_DIR" set to
NOTFOUND ***
-- Could NOT find TBB
-- DEAL_II_WITH_THREADS has unmet external dependencies.
-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS
-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wparentheses
-- Performing Test DEAL_II_HAVE_FLAG_Wparentheses - Success
-- DEAL_II_WITH_THREADS successfully set up with bundled packages.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_1_zlib.cmake
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8")
-- ZLIB_VERSION: 1.2.8
-- ZLIB_LIBRARIES: /usr/lib/x86_64-linux-gnu/libz.so
-- ZLIB_INCLUDE_DIRS: /usr/include
-- Found ZLIB
-- DEAL_II_WITH_ZLIB successfully set up with external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_2_metis.cmake
-- METIS_LIBRARY not found! Call:
-- FIND_LIBRARY(METIS_LIBRARY NAMES metis HINTS PATH_SUFFIXES lib lib64 lib
build/Linux-x86_64/libmetis)
-- PARMETIS_LIBRARY not found! Call:
-- FIND_LIBRARY(PARMETIS_LIBRARY NAMES parmetis HINTS NO_DEFAULT_PATH
NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH
NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
-- METIS_INCLUDE_DIR not found! Call:
-- FIND_PATH(METIS_INCLUDE_DIR metis.h HINTS PATH_SUFFIXES metis
include/metis include)
-- METIS_LIBRARIES: *** Required variable "METIS_LIBRARY" set to NOTFOUND ***
-- METIS_INCLUDE_DIRS: *** Required variable "METIS_INCLUDE_DIR" set to
NOTFOUND ***
-- METIS_USER_INCLUDE_DIRS: *** Required variable "METIS_INCLUDE_DIR" set to
NOTFOUND ***
-- Could NOT find METIS
-- DEAL_II_WITH_METIS has unmet external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_2_trilinos.cmake
-- EPETRA_CONFIG_H not found! Call:
-- FIND_FILE(EPETRA_CONFIG_H Epetra_config.h HINTS NO_DEFAULT_PATH
NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH
NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
-- SACADO_CONFIG_H not found! Call:
-- FIND_FILE(SACADO_CONFIG_H Sacado_config.h HINTS NO_DEFAULT_PATH
NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH
NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
-- SACADO_CMATH_HPP not found! Call:
-- FIND_FILE(SACADO_CMATH_HPP Sacado_cmath.hpp HINTS NO_DEFAULT_PATH
NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH
NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
-- TRILINOS_LIBRARIES:
/usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so
-- TRILINOS_INCLUDE_DIRS: *** Required variable "Trilinos_INCLUDE_DIRS" empty
***
-- TRILINOS_USER_INCLUDE_DIRS: *** Required variable "Trilinos_INCLUDE_DIRS"
empty ***
-- Could NOT find TRILINOS
-- DEAL_II_WITH_TRILINOS has unmet external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_2_umfpack.cmake
-- Found UMFPACK_INCLUDE_DIR
-- Found AMD_INCLUDE_DIR
-- Found SuiteSparse_config_INCLUDE_DIR
-- Found UMFPACK_LIBRARY
-- Found AMD_LIBRARY
-- Found CHOLMOD_LIBRARY
-- Found COLAMD_LIBRARY
-- Found CCOLAMD_LIBRARY
-- Found CAMD_LIBRARY
-- Found SuiteSparse_config_LIBRARY
-- Performing Test LAPACK_SUITESPARSECONFIG_WITH_PIC
-- Performing Test LAPACK_SUITESPARSECONFIG_WITH_PIC - Failed
-- Performing Test rt_LIBRARY
-- Performing Test rt_LIBRARY - Success
-- UMFPACK_VERSION: 5.7.1
-- UMFPACK_LIBRARIES:
/usr/lib/x86_64-linux-gnu/libumfpack.so;/usr/lib/x86_64-linux-gnu/libcholmod.so;/usr/lib/x86_64-linux-gnu/libccolamd.so;/usr/lib/x86_64-linux-gnu/libcolamd.so;/usr/lib/x86_64-linux-gnu/libcamd.so;/usr/lib/x86_64-linux-gnu/libamd.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;gfortran;quadmath;m;c;rt
-- UMFPACK_INCLUDE_DIRS:
/usr/include/suitesparse;/usr/include/suitesparse;/usr/include/suitesparse
-- UMFPACK_USER_INCLUDE_DIRS:
/usr/include/suitesparse;/usr/include/suitesparse;/usr/include/suitesparse
-- UMFPACK_LINKER_FLAGS:
-- Found UMFPACK
-- DEAL_II_WITH_UMFPACK successfully set up with external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_3_petsc.cmake
-- Found PETSC_LIBRARY
-- Found PETSC_INCLUDE_DIR_ARCH
-- Found PETSC_INCLUDE_DIR_COMMON
-- PETSC_PETSCVARIABLES not found! Call:
-- FIND_FILE(PETSC_PETSCVARIABLES NAMES petscvariables HINTS /
PATH_SUFFIXES conf)
-- PETSC_VERSION: 3.6.2.0
-- PETSC_LIBRARIES: /usr/lib/x86_64-linux-gnu/libpetsc.so
-- PETSC_INCLUDE_DIRS: /usr/include/petsc;/usr/include/petsc
-- PETSC_USER_INCLUDE_DIRS: /usr/include/petsc;/usr/include/petsc
-- Found PETSC
-- DEAL_II_WITH_PETSC successfully set up with external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_arpack.cmake
-- ARPACK_LIBRARY not found! Call:
-- FIND_LIBRARY(ARPACK_LIBRARY NAMES arpack HINTS PATH_SUFFIXES lib lib64
lib)
-- PARPACK_LIBRARY not found! Call:
-- FIND_LIBRARY(PARPACK_LIBRARY NAMES parpack HINTS NO_DEFAULT_PATH
NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH NO_SYSTEM_ENVIRONMENT_PATH
NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
-- ARPACK_LIBRARIES: *** Required variable "ARPACK_LIBRARY" set to NOTFOUND
***
-- ARPACK_LINKER_FLAGS:
-- Could NOT find ARPACK
-- DEAL_II_WITH_ARPACK has unmet external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_boost.cmake
CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
Imported targets not available for Boost version
Call Stack (most recent call first):
/usr/share/cmake-3.5/Modules/FindBoost.cmake:763
(_Boost_COMPONENT_DEPENDENCIES)
/usr/share/cmake-3.5/Modules/FindBoost.cmake:1332
(_Boost_MISSING_DEPENDENCIES)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/modules/FindBOOST.cmake:46 (FIND_PACKAGE)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/configure/configure_boost.cmake:51 (FIND_PACKAGE)
build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1
(FEATURE_BOOST_FIND_EXTERNAL)
cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
cmake/configure/configure_boost.cmake:72 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:119 (VERBOSE_INCLUDE)
CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
Imported targets not available for Boost version
Call Stack (most recent call first):
/usr/share/cmake-3.5/Modules/FindBoost.cmake:763
(_Boost_COMPONENT_DEPENDENCIES)
/usr/share/cmake-3.5/Modules/FindBoost.cmake:1332
(_Boost_MISSING_DEPENDENCIES)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/modules/FindBOOST.cmake:46 (FIND_PACKAGE)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/configure/configure_boost.cmake:51 (FIND_PACKAGE)
build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1
(FEATURE_BOOST_FIND_EXTERNAL)
cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
cmake/configure/configure_boost.cmake:72 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:119 (VERBOSE_INCLUDE)
CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
Imported targets not available for Boost version
Call Stack (most recent call first):
/usr/share/cmake-3.5/Modules/FindBoost.cmake:763
(_Boost_COMPONENT_DEPENDENCIES)
/usr/share/cmake-3.5/Modules/FindBoost.cmake:1332
(_Boost_MISSING_DEPENDENCIES)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/modules/FindBOOST.cmake:46 (FIND_PACKAGE)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/configure/configure_boost.cmake:51 (FIND_PACKAGE)
build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1
(FEATURE_BOOST_FIND_EXTERNAL)
cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
cmake/configure/configure_boost.cmake:72 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:119 (VERBOSE_INCLUDE)
CMake Warning at /usr/share/cmake-3.5/Modules/FindBoost.cmake:725 (message):
Imported targets not available for Boost version
Call Stack (most recent call first):
/usr/share/cmake-3.5/Modules/FindBoost.cmake:763
(_Boost_COMPONENT_DEPENDENCIES)
/usr/share/cmake-3.5/Modules/FindBoost.cmake:1332
(_Boost_MISSING_DEPENDENCIES)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/modules/FindBOOST.cmake:46 (FIND_PACKAGE)
cmake/macros/macro_find_package.cmake:27 (_FIND_PACKAGE)
cmake/configure/configure_boost.cmake:51 (FIND_PACKAGE)
build/CMakeFiles/CMakeTmp/macro_configure_feature.tmp:1
(FEATURE_BOOST_FIND_EXTERNAL)
cmake/macros/macro_configure_feature.cmake:76 (INCLUDE)
cmake/macros/macro_configure_feature.cmake:240 (RUN_COMMAND)
cmake/configure/configure_boost.cmake:72 (CONFIGURE_FEATURE)
cmake/macros/macro_verbose_include.cmake:19 (INCLUDE)
CMakeLists.txt:119 (VERBOSE_INCLUDE)
-- Could NOT find Boost
-- BOOST_LIBRARIES: *** Required variable "Boost_LIBRARIES" empty ***
-- BOOST_INCLUDE_DIRS: *** Required variable "Boost_INCLUDE_DIRS" set to
NOTFOUND ***
-- BOOST_USER_INCLUDE_DIRS: *** Required variable "Boost_INCLUDE_DIRS" set to
NOTFOUND ***
-- Could NOT find BOOST
-- DEAL_II_WITH_BOOST has unmet external dependencies.
-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs
-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs - Success
-- DEAL_II_WITH_BOOST successfully set up with bundled packages.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_hdf5.cmake
-- HDF5_INCLUDE_DIR not found! Call:
-- FIND_PATH(HDF5_INCLUDE_DIR hdf5.h HINTS PATH_SUFFIXES hdf5 hdf5/include
include/hdf5 include)
-- HDF5_LIBRARY not found! Call:
-- FIND_LIBRARY(HDF5_LIBRARY NAMES hdf5 HINTS PATH_SUFFIXES hdf5/lib lib
lib64 lib)
-- HDF5_HL_LIBRARY not found! Call:
-- FIND_LIBRARY(HDF5_HL_LIBRARY NAMES hdf5_hl HINTS PATH_SUFFIXES lib lib64
lib)
-- HDF5_PUBCONF not found! Call:
-- FIND_FILE(HDF5_PUBCONF NAMES H5pubconf.h H5pubconf-64.h HINTS
HDF5_INCLUDE_DIR-NOTFOUND PATH_SUFFIXES hdf5 hdf5/include include/hdf5 include)
-- HDF5_LIBRARIES: *** Required variable "HDF5_HL_LIBRARY" set to NOTFOUND ***
-- HDF5_INCLUDE_DIRS: *** Required variable "HDF5_INCLUDE_DIR" set to
NOTFOUND ***
-- HDF5_USER_INCLUDE_DIRS: *** Required variable "HDF5_INCLUDE_DIR" set to
NOTFOUND ***
-- Could NOT find HDF5
-- DEAL_II_WITH_HDF5 has unmet external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_muparser.cmake
-- MUPARSER_LIBRARY not found! Call:
-- FIND_LIBRARY(MUPARSER_LIBRARY NAMES muparser muparserd HINTS
PATH_SUFFIXES lib lib64 lib)
-- MUPARSER_INCLUDE_DIR not found! Call:
-- FIND_PATH(MUPARSER_INCLUDE_DIR muParserDef.h HINTS PATH_SUFFIXES include)
-- MUPARSER_LIBRARIES: *** Required variable "MUPARSER_LIBRARY" set to
NOTFOUND ***
-- MUPARSER_INCLUDE_DIRS: *** Required variable "MUPARSER_INCLUDE_DIR" set to
NOTFOUND ***
-- Could NOT find MUPARSER
-- DEAL_II_WITH_MUPARSER has unmet external dependencies.
-- DEAL_II_WITH_MUPARSER successfully set up with bundled packages.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_netcdf.cmake
-- NETCDF_INCLUDE_DIR not found! Call:
-- FIND_PATH(NETCDF_INCLUDE_DIR netcdfcpp.h HINTS PATH_SUFFIXES netcdf
include)
-- NETCDF_CPLUSPLUS_LIBRARY not found! Call:
-- FIND_LIBRARY(NETCDF_CPLUSPLUS_LIBRARY NAMES netcdf_c++ netcdf_cpp HINTS
PATH_SUFFIXES lib lib64 lib)
-- NETCDF_C_LIBRARY not found! Call:
-- FIND_LIBRARY(NETCDF_C_LIBRARY NAMES netcdf HINTS PATH_SUFFIXES lib lib64
lib)
-- NETCDF_LIBRARIES: *** Required variable "NETCDF_CPLUSPLUS_LIBRARY" set to
NOTFOUND ***
-- NETCDF_INCLUDE_DIRS: *** Required variable "NETCDF_INCLUDE_DIR" set to
NOTFOUND ***
-- Could NOT find NETCDF
-- DEAL_II_WITH_NETCDF has unmet external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_opencascade.cmake
-- OPENCASCADE_INCLUDE_DIR not found! Call:
-- FIND_PATH(OPENCASCADE_INCLUDE_DIR Standard_Version.hxx HINTS
PATH_SUFFIXES include include/oce inc)
-- OPENCASCADE_TKBO not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKBO NAMES TKBO HINTS PATH_SUFFIXES lib lib64
lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKBool not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKBool NAMES TKBool HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKBRep not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKBRep NAMES TKBRep HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKernel not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKernel NAMES TKernel HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKFeat not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKFeat NAMES TKFeat HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKFillet not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKFillet NAMES TKFillet HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKG2d not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKG2d NAMES TKG2d HINTS PATH_SUFFIXES lib lib64
lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKG3d not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKG3d NAMES TKG3d HINTS PATH_SUFFIXES lib lib64
lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKGeomAlgo not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKGeomAlgo NAMES TKGeomAlgo HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKGeomBase not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKGeomBase NAMES TKGeomBase HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKHLR not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKHLR NAMES TKHLR HINTS PATH_SUFFIXES lib lib64
lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKIGES not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKIGES NAMES TKIGES HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKMath not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKMath NAMES TKMath HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKMesh not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKMesh NAMES TKMesh HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKOffset not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKOffset NAMES TKOffset HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKPrim not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKPrim NAMES TKPrim HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKShHealing not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKShHealing NAMES TKShHealing HINTS
PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib
lin32/gcc/lib)
-- OPENCASCADE_TKSTEP not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKSTEP NAMES TKSTEP HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKSTEPAttr not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKSTEPAttr NAMES TKSTEPAttr HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKSTEPBase not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKSTEPBase NAMES TKSTEPBase HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKSTL not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKSTL NAMES TKSTL HINTS PATH_SUFFIXES lib lib64
lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKTopAlgo not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKTopAlgo NAMES TKTopAlgo HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKXSBase not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKXSBase NAMES TKXSBase HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_LIBRARIES: *** Required variable "OPENCASCADE_TKBO" set to
NOTFOUND ***
-- OPENCASCADE_INCLUDE_DIRS: *** Required variable "OPENCASCADE_INCLUDE_DIR"
set to NOTFOUND ***
-- OPENCASCADE_USER_INCLUDE_DIRS: *** Required variable
"OPENCASCADE_INCLUDE_DIR" set to NOTFOUND ***
-- Could NOT find OPENCASCADE
-- DEAL_II_WITH_OPENCASCADE has unmet external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_p4est.cmake
-- SC_INCLUDE_DIR not found! Call:
-- FIND_PATH(SC_INCLUDE_DIR sc.h HINTS /FAST /DEBUG /FAST /DEBUG
PATH_SUFFIXES sc include/p4est include src sc/src)
-- P4EST_LIBRARY_OPTIMIZED not found! Call:
-- FIND_LIBRARY(P4EST_LIBRARY_OPTIMIZED NAMES p4est HINTS /FAST /DEBUG
PATH_SUFFIXES lib lib64 lib src)
-- SC_LIBRARY_OPTIMIZED not found! Call:
-- FIND_LIBRARY(SC_LIBRARY_OPTIMIZED NAMES sc HINTS /FAST /DEBUG /FAST
/DEBUG PATH_SUFFIXES lib lib64 lib src sc/src)
-- P4EST_LIBRARY_DEBUG not found! Call:
-- FIND_LIBRARY(P4EST_LIBRARY_DEBUG NAMES p4est HINTS /DEBUG PATH_SUFFIXES
lib lib64 lib src)
-- SC_LIBRARY_DEBUG not found! Call:
-- FIND_LIBRARY(SC_LIBRARY_DEBUG NAMES sc HINTS /DEBUG /DEBUG PATH_SUFFIXES
lib lib64 lib src sc/src)
-- P4EST_INCLUDE_DIR not found! Call:
-- FIND_PATH(P4EST_INCLUDE_DIR p4est_config.h HINTS /FAST /DEBUG
PATH_SUFFIXES p4est include/p4est include src)
-- P4EST_LIBRARIES: *** Required variable "P4EST_LIBRARY_OPTIMIZED" set to
NOTFOUND ***
-- P4EST_INCLUDE_DIRS: *** Required variable "P4EST_INCLUDE_DIR" set to
NOTFOUND ***
-- P4EST_USER_INCLUDE_DIRS: *** Required variable "P4EST_INCLUDE_DIR" set to
NOTFOUND ***
-- Could NOT find P4EST
-- DEAL_II_WITH_P4EST has unmet external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/configure/configure_slepc.cmake
-- SLEPC_LIBRARY not found! Call:
-- FIND_LIBRARY(SLEPC_LIBRARY NAMES slepc HINTS / PATH_SUFFIXES lib lib64
lib)
-- SLEPC_INCLUDE_DIR_ARCH not found! Call:
-- FIND_PATH(SLEPC_INCLUDE_DIR_ARCH slepcconf.h HINTS / PATH_SUFFIXES slepc
include include/slepc)
-- SLEPC_INCLUDE_DIR_COMMON not found! Call:
-- FIND_PATH(SLEPC_INCLUDE_DIR_COMMON slepcversion.h HINTS / PATH_SUFFIXES
slepc include include/slepc)
-- SLEPC_LIBRARIES: *** Required variable "SLEPC_LIBRARY" set to NOTFOUND ***
-- SLEPC_INCLUDE_DIRS: *** Required variable "SLEPC_INCLUDE_DIR_ARCH" set to
NOTFOUND ***
-- SLEPC_USER_INCLUDE_DIRS: *** Required variable "SLEPC_INCLUDE_DIR_ARCH"
set to NOTFOUND ***
-- Could NOT find SLEPC
-- DEAL_II_WITH_SLEPC has unmet external dependencies.
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/setup_cpack.cmake
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/setup_custom_targets.cmake
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/setup_finalize.cmake
--
-- Include
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/cmake/setup_write_config.cmake
-- Query git repository information.
-- Could NOT find Git (missing: GIT_EXECUTABLE)
--
-- Configuring done. Proceed to target definitions now.
-- Setting up bundled features
-- BOOST::Iostreams will not support bz2'ed streams because libbz2 or its
header files could not be found
-- Performing Test DEAL_II_HAVE_FLAG_Wnested_anon_types
-- Performing Test DEAL_II_HAVE_FLAG_Wnested_anon_types - Failed
-- Setting up bundled features - Done
-- Setting up library
-- Setting up library - Done
-- Setting up project configuration
-- Setting up project configuration - Done
-- Setting up examples
-- Setting up examples - Done
-- Setting up quick_tests in DEBUG mode
-- Setting up quick_tests in DEBUG mode - Done
-- Setting up testsuite
-- Setting up testsuite - Done
###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/user/mylibs/dealii-8.4.1-PETSc
# CMAKE_SOURCE_DIR:
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc
# (version 8.4.1)
# CMAKE_BINARY_DIR:
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/build
# CMAKE_CXX_COMPILER: GNU 5.3.1 on platform Linux x86_64
# /usr/bin/c++
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# ( DEAL_II_WITH_ARPACK = OFF )
# DEAL_II_WITH_BOOST set up with bundled packages
# ( DEAL_II_WITH_BZIP2 = OFF )
# DEAL_II_WITH_CXX11 = ON
# DEAL_II_WITH_CXX14 = ON
# ( DEAL_II_WITH_HDF5 = OFF )
# DEAL_II_WITH_LAPACK set up with external dependencies
# ( DEAL_II_WITH_METIS = OFF )
# DEAL_II_WITH_MPI set up with external dependencies
# DEAL_II_WITH_MUPARSER set up with bundled packages
# ( DEAL_II_WITH_NETCDF = OFF )
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# ( DEAL_II_WITH_P4EST = OFF )
# DEAL_II_WITH_PETSC set up with external dependencies
# ( DEAL_II_WITH_SLEPC = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# ( DEAL_II_WITH_TRILINOS = OFF )
# DEAL_II_WITH_UMFPACK set up with external dependencies
# DEAL_II_WITH_ZLIB set up with external dependencies
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
# Detailed information (compiler flags, feature configuration) can be found in
detailed.log
#
# Run $ make info to print a help message with a list of top level targets
#
###
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
MPI_ARCH
-- Build files have been written to:
/home/user/Documents/Zipstore2/dealii-8.4.1-PETSc/build
