Timo: Simple question: basically, now I have to download the new file ''include/deal.II/lac/petsc_precondition.h'' from the repository, replace it in my dealii source code and recompile deal, that should do the trick?
Ignacio. On Sun, Aug 14, 2016 at 8:02 PM, Timo Heister <heis...@clemson.edu> wrote: > Thanks, this should fix it: https://github.com/dealii/dealii/pull/2963 > > On Sat, Aug 13, 2016 at 5:28 PM, Ignacio Tomas <nacho...@gmail.com> wrote: > > This is the whole error message > > > > > > > > > > > > terminate called after throwing an instance of > > 'dealii::StandardExceptions::ExcInvalidState' > > what(): > > -------------------------------------------------------- > > An error occurred in line <68> of file > > </home/nachotex/Documents/deal/deal/dealii-8.4.1/source/ > lac/petsc_precondition.cc> > > in function > > void dealii::PETScWrappers::PreconditionerBase::create_pc() > > The violated condition was: > > pc == NULL > > The name and call sequence of the exception was: > > StandardExceptions::ExcInvalidState () > > Additional Information: > > (none) > > -------------------------------------------------------- > > > > [nachote:11234] *** Process received signal *** > > [nachote:11234] Signal: Aborted (6) > > [nachote:11234] Signal code: (-6) > > [nachote:11234] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x10d10) > > [0x7f0cacb08d10] > > [nachote:11234] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x37) > > [0x7f0cac14c267] > > [nachote:11234] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x16a) > > [0x7f0cac14deca] > > [nachote:11234] [ 3] > > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(_ZN9__gnu_ > cxx27__verbose_terminate_handlerEv+0x16d) > > [0x7f0cac84a06d] > > [nachote:11234] [ 4] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x5eee6) > > [0x7f0cac847ee6] > > [nachote:11234] [ 5] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x5ef31) > > [0x7f0cac847f31] > > [nachote:11234] [ 6] /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x5f149) > > [0x7f0cac848149] > > [nachote:11234] [ 7] > > /home/nachotex/Documents/deal/deal/dealii841installation/ > lib/libdeal_II.so.8.4.1(_ZN6dealii18deal_II_exceptions9internals11issue_ > errorINS_18StandardExceptions15ExcInvalidStateEEEvNS1_ > 17ExceptionHandlingEPKciS7_S7_S7_T_+0x84) > > [0x7f0cb0a182d4] > > [nachote:11234] [ 8] > > /home/nachotex/Documents/deal/deal/dealii841installation/ > lib/libdeal_II.so.8.4.1(_ZN6dealii13PETScWrappers18Prec > onditionerBase9create_pcEv+0xf9) > > [0x7f0cb2a72689] > > [nachote:11234] [ 9] > > /home/nachotex/Documents/deal/deal/dealii841installation/ > lib/libdeal_II.so.8.4.1(_ZN6dealii13PETScWrappers23Prec > onditionBlockJacobi10initializeERKNS0_10MatrixBaseERKNS1_ > 14AdditionalDataE+0x34) > > [0x7f0cb2a742c4] > > [nachote:11234] [10] > > ./main(_ZN8PsystemsILi1EE26initialize_preconditionersEv+0x2c) [0x46536c] > > [nachote:11234] [11] > > ./main(_ZN8PsystemsILi1EE23timeloopSSP2EVnotlumpedEv+0x36) [0x43ca76] > > [nachote:11234] [12] ./main(_ZN8PsystemsILi1EE14validation_runEv+0x356) > > [0x43d376] > > [nachote:11234] [13] ./main(main+0x55) [0x4354c5] > > [nachote:11234] [14] /lib/x86_64-linux-gnu/libc.so. > 6(__libc_start_main+0xf0) > > [0x7f0cac137a40] > > [nachote:11234] [15] ./main(_start+0x29) [0x4356f9] > > [nachote:11234] *** End of error message *** > > CMakeFiles/run.dir/build.make:49: recipe for target 'CMakeFiles/run' > failed > > make[3]: *** [CMakeFiles/run] Aborted (core dumped) > > CMakeFiles/Makefile2:130: recipe for target 'CMakeFiles/run.dir/all' > failed > > make[2]: *** [CMakeFiles/run.dir/all] Error 2 > > CMakeFiles/Makefile2:138: recipe for target 'CMakeFiles/run.dir/rule' > failed > > make[1]: *** [CMakeFiles/run.dir/rule] Error 2 > > Makefile:136: recipe for target 'run' failed > > make: *** [run] Error 2 > > > > > > > > Clearly you can see that the error happens at > > void dealii::PETScWrappers::PreconditionerBase::create_pc() > > > > > > > > On Sat, Aug 13, 2016 at 12:03 PM, Timo Heister <heis...@clemson.edu> > wrote: > >> > >> > and stops again with a > >> > error when I make the call to initialize for the second time which is > >> > expected since ''initialize()'' can only be called once. > >> > >> I would hope that calling initialize() more than once works. What is > >> the error you are getting? > >> > >> > >> -- > >> Timo Heister > >> http://www.math.clemson.edu/~heister/ > >> > >> -- > >> The deal.II project is located at http://www.dealii.org/ > >> For mailing list/forum options, see > >> https://groups.google.com/d/forum/dealii?hl=en > >> --- > >> You received this message because you are subscribed to a topic in the > >> Google Groups "deal.II User Group" group. > >> To unsubscribe from this topic, visit > >> https://groups.google.com/d/topic/dealii/NiShx850REE/unsubscribe. > >> To unsubscribe from this group and all its topics, send an email to > >> dealii+unsubscr...@googlegroups.com. > >> For more options, visit https://groups.google.com/d/optout. > > > > > > -- > > The deal.II project is located at http://www.dealii.org/ > > For mailing list/forum options, see > > https://groups.google.com/d/forum/dealii?hl=en > > --- > > You received this message because you are subscribed to the Google Groups > > "deal.II User Group" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to dealii+unsubscr...@googlegroups.com. > > For more options, visit https://groups.google.com/d/optout. > > > > -- > Timo Heister > http://www.math.clemson.edu/~heister/ > > -- > The deal.II project is located at http://www.dealii.org/ > For mailing list/forum options, see https://groups.google.com/d/ > forum/dealii?hl=en > --- > You received this message because you are subscribed to a topic in the > Google Groups "deal.II User Group" group. > To unsubscribe from this topic, visit https://groups.google.com/d/ > topic/dealii/NiShx850REE/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > dealii+unsubscr...@googlegroups.com. > For more options, visit https://groups.google.com/d/optout. > -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. 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