Dear Bruno,
Though I have complied, I could not complete the make test still now, I
was trying to rectify the problem but could not succeed. test 4 failed.
Could you please tell me how to compile properly with mpi, I did the
following
cmake -DDEAL_II_WITH_MPI=ON \
-DDEAL_II_WITH_TRILINOS=ON\
-DTRILINOS_DIR=~/trilinos/ \
-DCMAKE_INSTALL_PREFIX=~/dealII_1 \
~/dealii-8.4.1
I have attached the .log file
Thanks a lot
On Thu, Dec 8, 2016 at 11:11 AM, Bruno Turcksin <[email protected]>
wrote:
> 2016-12-08 8:57 GMT-05:00 sudarshan kumar <[email protected]>:
> > I have complied netcdf in different directory and i pass the command
> > -DNETCDF_DIR=/path/to/netcdf to cmake when I configure dealii, but
> still
> > it search for the old directory and end up in error,
> Did you configure deal.II in a new directory? Can you send me the full
> command that you are using and the detailed.log file.
>
> Best,
>
> Bruno
>
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--
Dr. Sudarshan Kumar Kenettinkara
Post doctoral fellow
Centro de Investigación en Ingeniería Matemática
UDEC, Casilla-160
Concepcion, Chile 4030000
Phone +56 9 98095323
Office: 20
Phone: +56-4-2661320
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[HANDLER_OUTPUT]
Test project /home/sudarshan/dealii-8.4.1/build/tests/quick_tests
Start 1: step.debug
1/5 Test #1: step.debug ....................... Passed 5.68 sec
Start 2: step.release
2/5 Test #2: step.release ..................... Passed 5.53 sec
Start 3: affinity.debug
3/5 Test #3: affinity.debug ................... Passed 5.40 sec
Start 4: mpi.debug
4/5 Test #4: mpi.debug ........................***Failed 5.43 sec
Test mpi.debug: RUN
=============================== OUTPUT BEGIN ===============================
[ 0%] Built target kill-mpi.debug-OK
[ 0%] Built target expand_instantiations_exe
[ 0%] Built target obj_opencascade.inst
[ 0%] Built target obj_opencascade.debug
[ 5%] Built target obj_boost_serialization.debug
[ 14%] Built target obj_umfpack_I_UMF.debug
[ 14%] Built target obj_boost_system.debug
[ 16%] Built target obj_boost_iostreams.debug
[ 21%] Built target obj_tbb.debug
[ 29%] Built target obj_umfpack_L_UMF.debug
[ 32%] Built target obj_umfpack_I_UMFPACK.debug
[ 38%] Built target obj_umfpack_L_UMFPACK.debug
[ 38%] Built target obj_umfpack_DI_TSOLVE.debug
[ 38%] Built target obj_umfpack_DI_TRIPLET_MAP_NOX.debug
[ 38%] Built target obj_umfpack_DI_TRIPLET_MAP_X.debug
[ 38%] Built target obj_umfpack_DI_TRIPLET_NOMAP_X.debug
[ 40%] Built target obj_umfpack_DI_STORE.debug
[ 40%] Built target obj_umfpack_DI_ASSEMBLE.debug
[ 40%] Built target obj_umfpack_DI_SOLVE.debug
[ 40%] Built target obj_umfpack_DL_TSOLVE.debug
[ 40%] Built target obj_umfpack_DL_TRIPLET_MAP_NOX.debug
[ 40%] Built target obj_umfpack_DL_TRIPLET_MAP_X.debug
[ 40%] Built target obj_umfpack_DL_TRIPLET_NOMAP_X.debug
[ 40%] Built target obj_umfpack_DL_STORE.debug
[ 40%] Built target obj_umfpack_DL_ASSEMBLE.debug
[ 40%] Built target obj_umfpack_DL_SOLVE.debug
[ 40%] Built target obj_umfpack_GENERIC.debug
[ 41%] Built target obj_amd_int.debug
[ 43%] Built target obj_amd_long.debug
[ 43%] Built target obj_amd_global.debug
[ 47%] Built target obj_numerics.inst
[ 52%] Built target obj_numerics.debug
[ 60%] Built target obj_fe.inst
[ 65%] Built target obj_fe.debug
[ 65%] Built target obj_muparser.debug
[ 65%] Built target obj_dofs.inst
[ 69%] Built target obj_dofs.debug
[ 72%] Built target obj_lac.inst
[ 80%] Built target obj_lac.debug
[ 81%] Built target obj_base.inst
[ 89%] Built target obj_base.debug
[ 90%] Built target obj_grid.inst
[ 94%] Built target obj_grid.debug
[ 96%] Built target obj_hp.inst
[ 96%] Built target obj_hp.debug
[ 96%] Built target obj_distributed.inst
[ 98%] Built target obj_distributed.debug
[100%] Built target obj_multigrid.inst
[100%] Built target obj_multigrid.debug
[100%] Built target obj_algorithms.inst
[100%] Built target obj_algorithms.debug
[100%] Built target obj_integrators.debug
[100%] Built target obj_matrix_free.inst
[100%] Built target obj_matrix_free.debug
[100%] Built target obj_meshworker.inst
[100%] Built target obj_meshworker.debug
[100%] Built target deal_II.g
[100%] Built target mpi.debug
mpi.debug: RUN failed. Output:
Hi from 0/1
Hi from 0/1
ERROR: process does not see nproc=2!
ERROR: process does not see nproc=2!
--------------------------------------------------------------------------
mpiexec noticed that the job aborted, but has no info as to the process
that caused that situation.
--------------------------------------------------------------------------
make[7]: *** [tests/quick_tests/CMakeFiles/mpi.debug.run] Error 1
make[6]: *** [tests/quick_tests/CMakeFiles/mpi.debug.run.dir/all] Error 2
make[5]: *** [tests/quick_tests/CMakeFiles/mpi.debug.run.dir/rule] Error 2
make[4]: *** [mpi.debug.run] Error 2
mpi.debug: ****** RUN failed *******
=============================== OUTPUT END ===============================
Expected stage PASSED - aborting
CMake Error at /home/sudarshan/dealii-8.4.1/cmake/scripts/run_test.cmake:140 (MESSAGE):
*** abort
Start 5: tbb.debug
5/5 Test #5: tbb.debug ........................ Passed 5.38 sec
80% tests passed, 1 tests failed out of 5
Total Test time (real) = 27.42 sec
The following tests FAILED:
4 - mpi.debug (Failed)
[ERROR_MESSAGE]
Errors while running CTest
