Please see the attached .log files.
Thanks a lot
Sudarshan
On Fri, Dec 16, 2016 at 10:43 AM, Jean-Paul Pelteret <[email protected]>
wrote:
> Dear Sudarshan,
>
> Could you please post the other log files, namely "detailed.log" and
> "summary.log". If the experience of previous posters with MPI problem is
> anything to go by then you've either
> (1) got a broken MPI installation, or
> (2) have compiled one or more of deal.II's dependencies using another
> [MPI] compiler.
>
> Regards,
> J-P
>
> On Thursday, December 15, 2016 at 8:45:02 PM UTC+1, Sudarshan Kumar wrote:
>>
>>
>> I have compiled dealii with the following;
>>
>> cmake -DDEAL_II_WITH_MPI=ON \
>> -DDEAL_II_WITH_TRILINOS=ON\
>> -DTRILINOS_DIR=~/trilinos/ \
>> -DCMAKE_INSTALL_PREFIX=~/dealII_1 \
>> ~/dealii-8.4.1
>>
>>
>> I installed trilinos12.4.2. I could compile and install dealii with the
>> above command. But when I run the make test, test 4 is failed. Please see
>> the attached log file.
>> I was unable to rectify this. Help is appreciated. thanks a lot.
>>
> --
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--
Dr. Sudarshan Kumar Kenettinkara
Post doctoral fellow
Centro de Investigación en Ingeniería Matemática
UDEC, Casilla-160
Concepcion, Chile 4030000
Phone +56 9 98095323
Office: 20
Phone: +56-4-2661320
Email: [email protected]
Homepage: http://www.ci2ma.udec.cl/skumar/
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###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/sudarshan/dealII_1
# CMAKE_SOURCE_DIR: /home/sudarshan/dealii-8.4.1
# (version 8.4.1)
# CMAKE_BINARY_DIR: /home/sudarshan/dealii-8.4.1/build
# CMAKE_CXX_COMPILER: GNU 4.8.4 on platform Linux x86_64
# /usr/bin/c++
# CMAKE_C_COMPILER: /usr/bin/cc
# CMAKE_Fortran_COMPILER: /usr/bin/gfortran
# CMAKE_GENERATOR: Unix Makefiles
#
# Base configuration (prior to feature configuration):
# DEAL_II_CXX_FLAGS: -pedantic -fpic -Wall -Wextra -Wpointer-arith -Wwrite-strings -Wsynth -Wsign-compare -Wswitch -Woverloaded-virtual -Wno-long-long -Wno-deprecated-declarations -Wno-literal-suffix -std=c++11
# DEAL_II_CXX_FLAGS_RELEASE: -O2 -funroll-loops -funroll-all-loops -fstrict-aliasing
# DEAL_II_CXX_FLAGS_DEBUG: -Og -ggdb -Wa,--compress-debug-sections
# DEAL_II_LINKER_FLAGS: -Wl,--as-needed -rdynamic -fuse-ld=gold
# DEAL_II_LINKER_FLAGS_RELEASE:
# DEAL_II_LINKER_FLAGS_DEBUG: -ggdb
# DEAL_II_DEFINITIONS:
# DEAL_II_DEFINITIONS_RELEASE:
# DEAL_II_DEFINITIONS_DEBUG: DEBUG
# DEAL_II_USER_DEFINITIONS:
# DEAL_II_USER_DEFINITIONS_REL:
# DEAL_II_USER_DEFINITIONS_DEB: DEBUG
# DEAL_II_INCLUDE_DIRS
# DEAL_II_USER_INCLUDE_DIRS:
# DEAL_II_BUNDLED_INCLUDE_DIRS:
# DEAL_II_LIBRARIES: m
# DEAL_II_LIBRARIES_RELEASE:
# DEAL_II_LIBRARIES_DEBUG:
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION = ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# ( DEAL_II_WITH_ARPACK = OFF )
# DEAL_II_WITH_BOOST set up with bundled packages
# BOOST_CXX_FLAGS = -Wno-unused-local-typedefs
# BOOST_BUNDLED_INCLUDE_DIRS = /home/sudarshan/dealii-8.4.1/bundled/boost-1.56.0/include
# BOOST_LIBRARIES = rt
# ( DEAL_II_WITH_BZIP2 = OFF )
# DEAL_II_WITH_CXX11 = ON
# ( DEAL_II_WITH_CXX14 = OFF )
# ( DEAL_II_WITH_HDF5 = OFF )
# DEAL_II_WITH_LAPACK set up with external dependencies
# LAPACK_LINKER_FLAGS =
# LAPACK_LIBRARIES = /usr/lib/liblapack.so;/usr/lib/libf77blas.so.3gf;/usr/lib/libatlas.so.3gf;gfortran;quadmath;m;c
# ( DEAL_II_WITH_METIS = OFF )
# DEAL_II_WITH_MPI set up with external dependencies
# MPI_VERSION = 3.0
# MPI_C_COMPILER = /usr/bin/mpicc
# MPI_CXX_COMPILER = /usr/bin/mpicxx
# MPI_Fortran_COMPILER = /usr/bin/mpif90
# MPI_CXX_FLAGS = -fstack-protector
# MPI_LINKER_FLAGS = -Wl,-Bsymbolic-functions -Wl,-z,relro
# MPI_INCLUDE_DIRS = /usr/include/mpich
# MPI_USER_INCLUDE_DIRS = /usr/include/mpich
# MPI_LIBRARIES = /usr/lib/x86_64-linux-gnu/libmpichcxx.so;/usr/lib/x86_64-linux-gnu/libmpichf90.so;/usr/lib/x86_64-linux-gnu/libmpich.so;/usr/lib/x86_64-linux-gnu/libopa.so;/usr/lib/x86_64-linux-gnu/libmpl.so;rt;/usr/lib/libcr.so;pthread
# DEAL_II_WITH_MUPARSER set up with bundled packages
# MUPARSER_BUNDLED_INCLUDE_DIRS = /home/sudarshan/dealii-8.4.1/bundled/muparser_v2_2_4//include
# ( DEAL_II_WITH_NETCDF = OFF )
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# ( DEAL_II_WITH_P4EST = OFF )
# ( DEAL_II_WITH_PETSC = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# THREADS_CXX_FLAGS = -Wno-parentheses
# THREADS_LINKER_FLAGS = -pthread
# THREADS_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_USER_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_BUNDLED_INCLUDE_DIRS = /home/sudarshan/dealii-8.4.1/bundled/tbb41_20130401oss/include
# THREADS_LIBRARIES = dl
# DEAL_II_WITH_TRILINOS set up with external dependencies
# TRILINOS_VERSION = 12.4.2
# TRILINOS_DIR = /home/sudarshan/trilinos
# TRILINOS_INCLUDE_DIRS = /home/sudarshan/trilinos/include
# TRILINOS_USER_INCLUDE_DIRS = /home/sudarshan/trilinos/include
# TRILINOS_LIBRARIES = /home/sudarshan/trilinos/lib/libmuelu-adapters.so;/home/sudarshan/trilinos/lib/libmuelu-interface.so;/home/sudarshan/trilinos/lib/libmuelu.so;/home/sudarshan/trilinos/lib/libteko.so;/home/sudarshan/trilinos/lib/libstratimikos.so;/home/sudarshan/trilinos/lib/libstratimikosbelos.so;/home/sudarshan/trilinos/lib/libstratimikosaztecoo.so;/home/sudarshan/trilinos/lib/libstratimikosamesos.so;/home/sudarshan/trilinos/lib/libstratimikosml.so;/home/sudarshan/trilinos/lib/libstratimikosifpack.so;/home/sudarshan/trilinos/lib/libifpack2-adapters.so;/home/sudarshan/trilinos/lib/libifpack2.so;/home/sudarshan/trilinos/lib/libzoltan2.so;/home/sudarshan/trilinos/lib/libanasazitpetra.so;/home/sudarshan/trilinos/lib/libModeLaplace.so;/home/sudarshan/trilinos/lib/libanasaziepetra.so;/home/sudarshan/trilinos/lib/libanasazi.so;/home/sudarshan/trilinos/lib/libbelostpetra.so;/home/sudarshan/trilinos/lib/libbelosepetra.so;/home/sudarshan/trilinos/lib/libbelos.so;/home/sudarshan/trilinos/lib/libml.so;/home/sudarshan/trilinos/lib/libifpack.so;/home/sudarshan/trilinos/lib/libpamgen_extras.so;/home/sudarshan/trilinos/lib/libpamgen.so;/home/sudarshan/trilinos/lib/libamesos2.so;/home/sudarshan/trilinos/lib/libamesos.so;/home/sudarshan/trilinos/lib/libgaleri-xpetra.so;/home/sudarshan/trilinos/lib/libgaleri.so;/home/sudarshan/trilinos/lib/libaztecoo.so;/home/sudarshan/trilinos/lib/libisorropia.so;/home/sudarshan/trilinos/lib/libxpetra-sup.so;/home/sudarshan/trilinos/lib/libxpetra.so;/home/sudarshan/trilinos/lib/libthyratpetra.so;/home/sudarshan/trilinos/lib/libthyraepetraext.so;/home/sudarshan/trilinos/lib/libthyraepetra.so;/home/sudarshan/trilinos/lib/libthyracore.so;/home/sudarshan/trilinos/lib/libepetraext.so;/home/sudarshan/trilinos/lib/libtpetraext.so;/home/sudarshan/trilinos/lib/libtpetrainout.so;/home/sudarshan/trilinos/lib/libtpetra.so;/home/sudarshan/trilinos/lib/libkokkostsqr.so;/home/sudarshan/trilinos/lib/libtpetrakernels.so;/home/sudarshan/trilinos/lib/libtpetraclassiclinalg.so;/home/sudarshan/trilinos/lib/libtpetraclassicnodeapi.so;/home/sudarshan/trilinos/lib/libtpetraclassic.so;/home/sudarshan/trilinos/lib/libtriutils.so;/home/sudarshan/trilinos/lib/libzoltan.so;/home/sudarshan/trilinos/lib/libepetra.so;/home/sudarshan/trilinos/lib/libsacado.so;/home/sudarshan/trilinos/lib/librtop.so;/home/sudarshan/trilinos/lib/libteuchoskokkoscomm.so;/home/sudarshan/trilinos/lib/libteuchoskokkoscompat.so;/home/sudarshan/trilinos/lib/libteuchosremainder.so;/home/sudarshan/trilinos/lib/libteuchosnumerics.so;/home/sudarshan/trilinos/lib/libteuchoscomm.so;/home/sudarshan/trilinos/lib/libteuchosparameterlist.so;/home/sudarshan/trilinos/lib/libteuchoscore.so;/home/sudarshan/trilinos/lib/libkokkosalgorithms.so;/home/sudarshan/trilinos/lib/libkokkoscontainers.so;/home/sudarshan/trilinos/lib/libkokkoscore.so;/home/sudarshan/trilinos/lib/libgtest.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;/usr/lib/x86_64-linux-gnu/libmpichcxx.so;/usr/lib/x86_64-linux-gnu/libmpich.so;/usr/lib/x86_64-linux-gnu/libopa.so;/usr/lib/x86_64-linux-gnu/libmpl.so;rt;/usr/lib/libcr.so;pthread
# DEAL_II_WITH_UMFPACK set up with bundled packages
# UMFPACK_BUNDLED_INCLUDE_DIRS = /home/sudarshan/dealii-8.4.1/bundled/umfpack/UMFPACK/Include;/home/sudarshan/dealii-8.4.1/bundled/umfpack/AMD/Include
# DEAL_II_WITH_ZLIB set up with external dependencies
# ZLIB_VERSION = 1.2.8
# ZLIB_INCLUDE_DIRS = /usr/include
# ZLIB_LIBRARIES = /usr/lib/x86_64-linux-gnu/libz.so
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
###
###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/sudarshan/dealII_1
# CMAKE_SOURCE_DIR: /home/sudarshan/dealii-8.4.1
# (version 8.4.1)
# CMAKE_BINARY_DIR: /home/sudarshan/dealii-8.4.1/build
# CMAKE_CXX_COMPILER: GNU 4.8.4 on platform Linux x86_64
# /usr/bin/c++
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION = ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# ( DEAL_II_WITH_ARPACK = OFF )
# DEAL_II_WITH_BOOST set up with bundled packages
# ( DEAL_II_WITH_BZIP2 = OFF )
# DEAL_II_WITH_CXX11 = ON
# ( DEAL_II_WITH_CXX14 = OFF )
# ( DEAL_II_WITH_HDF5 = OFF )
# DEAL_II_WITH_LAPACK set up with external dependencies
# ( DEAL_II_WITH_METIS = OFF )
# DEAL_II_WITH_MPI set up with external dependencies
# DEAL_II_WITH_MUPARSER set up with bundled packages
# ( DEAL_II_WITH_NETCDF = OFF )
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# ( DEAL_II_WITH_P4EST = OFF )
# ( DEAL_II_WITH_PETSC = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# DEAL_II_WITH_TRILINOS set up with external dependencies
# DEAL_II_WITH_UMFPACK set up with bundled packages
# DEAL_II_WITH_ZLIB set up with external dependencies
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
# Detailed information (compiler flags, feature configuration) can be found in detailed.log
#
# Run $ make info to print a help message with a list of top level targets
#
###
