I have a problem with the installation. This is the error I get:
In file included from /usr/include/boost/unordered/detail/buckets.hpp:16:0,
from /usr/include/boost/unordered/detail/table.hpp:10,
from /usr/include/boost/unordered/detail/equivalent.hpp:14,
from /usr/include/boost/unordered/unordered_map.hpp:17,
from /usr/include/boost/unordered_map.hpp:16,
from
/home/guntah/Downloads/dealii-8.4.1/include/deal.II/base/graph_coloring.h:24,
from
/home/guntah/Downloads/dealii-8.4.1/include/deal.II/base/work_stream.h:21,
from
/home/guntah/Downloads/dealii-8.4.1/source/numerics/data_out.cc:16:
/usr/local/include/boost/type_traits/aligned_storage.hpp:134:8: error:
previous definition of ‘struct
boost::is_pod<boost::detail::aligned_storage::aligned_storage_imp<size_,
alignment_> >’
struct is_pod<
::boost::detail::aligned_storage::aligned_storage_imp<size_, alignment_> >
: public true_type{};
^
make[2]: ***
[source/numerics/CMakeFiles/obj_numerics.release.dir/data_out.cc.o] Error 1
make[1]: *** [source/numerics/CMakeFiles/obj_numerics.release.dir/all]
Error 2
make: *** [all] Error 2
I am using Linux Mint 17 Qiana. Attached are the config files.
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###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/deal2
# CMAKE_SOURCE_DIR: /home/guntah/Downloads/dealii-8.4.1
# (version 8.4.1)
# CMAKE_BINARY_DIR: /home/guntah/Downloads/dealii-8.4.1/build
# CMAKE_CXX_COMPILER: GNU 4.8.5 on platform Linux x86_64
# /usr/bin/c++
# CMAKE_C_COMPILER: /usr/bin/cc
# CMAKE_Fortran_COMPILER: /usr/bin/gfortran
# CMAKE_GENERATOR: Unix Makefiles
#
# Base configuration (prior to feature configuration):
# DEAL_II_CXX_FLAGS: -pedantic -fpic -Wall -Wextra
-Wpointer-arith -Wwrite-strings -Wsynth -Wsign-compare -Wswitch
-Woverloaded-virtual -Wno-long-long -Wno-deprecated-declarations
-Wno-literal-suffix -std=c++11
# DEAL_II_CXX_FLAGS_RELEASE: -O2 -funroll-loops -funroll-all-loops
-fstrict-aliasing
# DEAL_II_CXX_FLAGS_DEBUG: -Og -ggdb -Wa,--compress-debug-sections
# DEAL_II_LINKER_FLAGS: -Wl,--as-needed -rdynamic -fuse-ld=gold
# DEAL_II_LINKER_FLAGS_RELEASE:
# DEAL_II_LINKER_FLAGS_DEBUG: -ggdb
# DEAL_II_DEFINITIONS:
# DEAL_II_DEFINITIONS_RELEASE:
# DEAL_II_DEFINITIONS_DEBUG: DEBUG
# DEAL_II_USER_DEFINITIONS:
# DEAL_II_USER_DEFINITIONS_REL:
# DEAL_II_USER_DEFINITIONS_DEB: DEBUG
# DEAL_II_INCLUDE_DIRS
# DEAL_II_USER_INCLUDE_DIRS:
# DEAL_II_BUNDLED_INCLUDE_DIRS:
# DEAL_II_LIBRARIES: m
# DEAL_II_LIBRARIES_RELEASE:
# DEAL_II_LIBRARIES_DEBUG:
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# DEAL_II_WITH_ARPACK set up with external dependencies
# ARPACK_LINKER_FLAGS =
# ARPACK_LIBRARIES =
/usr/lib/libarpack.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;gfortran;quadmath;m;c
# DEAL_II_WITH_BOOST set up with external dependencies
# BOOST_VERSION = 1.61.0
# BOOST_CXX_FLAGS = -Wno-unused-local-typedefs
# BOOST_INCLUDE_DIRS = /usr/local/include
# BOOST_USER_INCLUDE_DIRS = /usr/local/include
# BOOST_LIBRARIES =
/usr/lib/x86_64-linux-gnu/libboost_iostreams.so;/usr/lib/x86_64-linux-gnu/libboost_serialization.so;/usr/lib/x86_64-linux-gnu/libboost_system.so;/usr/lib/x86_64-linux-gnu/libboost_thread.so;pthread
# DEAL_II_WITH_BZIP2 set up with external dependencies
# BZIP2_VERSION = 1.0.6
# BZIP2_INCLUDE_DIRS = /usr/include
# BZIP2_LIBRARIES = /usr/lib/x86_64-linux-gnu/libbz2.so
# DEAL_II_WITH_CXX11 = ON
# ( DEAL_II_WITH_CXX14 = OFF )
# DEAL_II_WITH_HDF5 set up with external dependencies
# HDF5_INCLUDE_DIRS = /usr/include
# HDF5_USER_INCLUDE_DIRS = /usr/include
# HDF5_LIBRARIES =
/usr/lib/x86_64-linux-gnu/libhdf5_hl.so;/usr/lib/x86_64-linux-gnu/libhdf5.so
# DEAL_II_WITH_LAPACK set up with external dependencies
# LAPACK_LINKER_FLAGS =
# LAPACK_LIBRARIES =
/usr/lib/liblapack.so;/usr/lib/libblas.so;gfortran;quadmath;m;c
# ( DEAL_II_WITH_METIS = OFF )
# ( DEAL_II_WITH_MPI = OFF )
# DEAL_II_WITH_MUPARSER set up with bundled packages
# MUPARSER_BUNDLED_INCLUDE_DIRS =
/home/guntah/Downloads/dealii-8.4.1/bundled/muparser_v2_2_4//include
# DEAL_II_WITH_NETCDF set up with external dependencies
# NETCDF_INCLUDE_DIRS = /usr/include
# NETCDF_LIBRARIES =
/usr/lib/libnetcdf_c++.so;/usr/local/lib/libnetcdf.so
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# ( DEAL_II_WITH_P4EST = OFF )
# ( DEAL_II_WITH_PETSC = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# THREADS_CXX_FLAGS = -Wno-parentheses
# THREADS_LINKER_FLAGS = -pthread
# THREADS_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_USER_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_BUNDLED_INCLUDE_DIRS =
/home/guntah/Downloads/dealii-8.4.1/bundled/tbb41_20130401oss/include
# THREADS_LIBRARIES = dl
# ( DEAL_II_WITH_TRILINOS = OFF )
# DEAL_II_WITH_UMFPACK set up with external dependencies
# UMFPACK_VERSION = 5.6.2
# UMFPACK_LINKER_FLAGS =
# UMFPACK_INCLUDE_DIRS = /usr/include/suitesparse
# UMFPACK_USER_INCLUDE_DIRS = /usr/include/suitesparse
# UMFPACK_LIBRARIES =
/usr/lib/x86_64-linux-gnu/libumfpack.so;/usr/lib/x86_64-linux-gnu/libcholmod.so;/usr/lib/x86_64-linux-gnu/libccolamd.so;/usr/lib/x86_64-linux-gnu/libcolamd.so;/usr/lib/x86_64-linux-gnu/libcamd.so;/usr/lib/x86_64-linux-gnu/libamd.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;gfortran;quadmath;m;c;rt
# DEAL_II_WITH_ZLIB set up with external dependencies
# ZLIB_VERSION = 1.2.8
# ZLIB_INCLUDE_DIRS = /usr/include
# ZLIB_LIBRARIES = /usr/lib/x86_64-linux-gnu/libz.so
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
###
###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/deal2
# CMAKE_SOURCE_DIR: /home/guntah/Downloads/dealii-8.4.1
# (version 8.4.1)
# CMAKE_BINARY_DIR: /home/guntah/Downloads/dealii-8.4.1/build
# CMAKE_CXX_COMPILER: GNU 4.8.5 on platform Linux x86_64
# /usr/bin/c++
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# DEAL_II_WITH_ARPACK set up with external dependencies
# DEAL_II_WITH_BOOST set up with external dependencies
# DEAL_II_WITH_BZIP2 set up with external dependencies
# DEAL_II_WITH_CXX11 = ON
# ( DEAL_II_WITH_CXX14 = OFF )
# DEAL_II_WITH_HDF5 set up with external dependencies
# DEAL_II_WITH_LAPACK set up with external dependencies
# ( DEAL_II_WITH_METIS = OFF )
# ( DEAL_II_WITH_MPI = OFF )
# DEAL_II_WITH_MUPARSER set up with bundled packages
# DEAL_II_WITH_NETCDF set up with external dependencies
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# ( DEAL_II_WITH_P4EST = OFF )
# ( DEAL_II_WITH_PETSC = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# ( DEAL_II_WITH_TRILINOS = OFF )
# DEAL_II_WITH_UMFPACK set up with external dependencies
# DEAL_II_WITH_ZLIB set up with external dependencies
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
# Detailed information (compiler flags, feature configuration) can be found in
detailed.log
#
# Run $ make info to print a help message with a list of top level targets
#
###
