Hello,
I'm trying to install dealii on a shared AFS file system. Originally, I
tried to install everything manually, which I had done successfully on our
HPC cluster, but ran into a PETSc link error and decided to try Spack.
I followed the instructions on the deal.II wiki, but installation stopped
during the "install" phase for "ncurses". The packages "bzip2" and
"muparser" installed without a problem.
Here's the error message:
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100.0%
*==>* Staging archive:
/afs/umich.edu/user/s/t/stvdwtt/Public/PRISMS/software/spack/spack/var/spack/stage/ncurses-6.0-4wkexyzgaxdwrfs6wqje2ppcm5di263m/ncurses-6.0.tar.gz
*==>* Created stage in
/afs/umich.edu/user/s/t/stvdwtt/Public/PRISMS/software/spack/spack/var/spack/stage/ncurses-6.0-4wkexyzgaxdwrfs6wqje2ppcm5di263m
*==>* Applied patch sed_pgi.patch
*==>* Ran patch() for ncurses
*==>* Building ncurses [AutotoolsPackage]
*==>* Executing phase : 'autoreconf'
*==>* Executing phase : 'configure'
*==>* Executing phase : 'build'
*==>* Executing phase : 'install'
*==>* Error: ProcessError: Command exited with status 2:
'make' '-j2' 'install'
/afs/umich.edu/user/s/t/stvdwtt/Public/PRISMS/software/spack/spack/lib/spack/spack/build_systems/autotools.py:282,
in install:
277 def install(self, spec, prefix):
278 """Makes the install targets specified by
279 :py:attr:``~.AutotoolsPackage.install_targets``
280 """
281 with working_dir(self.build_directory):
>> 282 inspect.getmodule(self).make(*self.install_targets)
See build log for details:
/tmp/stvdwtt/spack-stage/spack-stage-7oak9b/ncurses-6.0/spack-build.out
I went to the build log (which is quite long), and see several errors like
this:
cd ../lib && (ln -s -f libpanel.so.6.0 libpanel.so.6; ln -s -f
libpanel.so.6 libpanel.so; )
/usr/bin/ld: total time in link: 0.021996
/usr/bin/ld: data size 29224512
cd
/afs/umich.edu/user/s/t/stvdwtt/Public/PRISMS/software/spack/spack/opt/spack/linux-rhel6-x86_64/gcc-4.4.7/ncurses-6.0-4wkexyzgaxdwrfs6wqje2ppcm5di263m/lib
&& (ln -s -f libpanel.so.6.0 libpanel.so.6; ln -s -f libpanel.so.6
libpanel.so; )
test -z "" && /sbin/ldconfig
/sbin/ldconfig: Can't create temporary cache file /etc/ld.so.cache~:
Permission denied
make[1]:
[/afs/umich.edu/user/s/t/stvdwtt/Public/PRISMS/software/spack/spack/opt/spack/linux-rhel6-x86_64/gcc-4.4.7/ncurses-6.0-4wkexyzgaxdwrfs6wqje2ppcm5di263m/lib/libpanel.so.6.0]
Error 1 (ignored)
The last few lines of the build log (which I'm not sure are relevant) are:
Running sh
/afs/umich.edu/user/s/t/stvdwtt/Public/PRISMS/software/spack/spack/var/spack/stage/ncurses-6.0-4wkexyzgaxdwrfs6wqje2ppcm5di263m/ncurses-6.0/misc/shlib
tic to install
/afs/umich.edu/user/s/t/stvdwtt/Public/PRISMS/software/spack/spack/opt/spack/linux-rhel6-x86_64/gcc-4.4.7/ncurses-6.0-4wkexyzgaxdwrfs6wqje2ppcm5di263m/share/terminfo
...
You may see messages regarding extended capabilities, e.g., AX.
These are extended terminal capabilities which are compiled
using
tic -x
If you have ncurses 4.2 applications, you should read the INSTALL
document, and install the terminfo without the -x option.
** creating form.pc
** creating ncurses++.pc
touch pc-files
/bin/sh -c 'for name in *.pc; do /usr/bin/install -c -m 644 $name
/afs/umich.edu/user/s/t/stvdwtt/Public/PRISMS/software/spack/spack/opt/spack/linux-rhel6-x86_64/gcc-4.4.7/ncurses-6.0-4wkexyzgaxdwrfs6wqje2ppcm5di263m/lib/pkgconfig/$name;
done'
Judging from the error, I'm assuming that it's a permissions issue. I
double-checked that my $SPACK_ROOT environment variable is set correctly.
The first line of the build log includes a '--prefix=' statement, which
correctly picks up the $SPACK_ROOT path.
Does anyone have ideas on what the problem is? Digging around the Spack
documentation didn't turn up anything.
Thanks!
Steve
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