Hi,
Thanks for replying, I have the same problem with version 8.5.0. Please
find attached the installation logs (summary.log, detailed.log).
Regards,
Amir
On Tuesday, May 2, 2017 at 1:23:13 AM UTC-4, Jean-Paul Pelteret wrote:
>
> Dear Amir,
>
> At the top of the quick test log, this line suggests what the issue is:
>
>> ../../lib/libdeal_II.g.so.8.2.1: undefined reference to `SuiteSparse_realloc'
>>
>>
> So there's either a problem with your SuiteSparse installation (which
> contains UMFPACK) or its configured incorrectly with deal.II. Can you
> please post the installation logs (summary.log, detailed.log) to help us
> work out exactly what the issue might be. In the mean time, I believe that
> if you don't pass any flag like "-DDEAL_II_WITH_UMFPACK=..." to cmake
> then deal.II should build itself with its bundled version of UMFPACK.
>
> By the way, deal.II 8.2.1 is over 2 years old and there have been a lot of
> updates and bugs fixed since then. Have you considered using a newer
> version?
>
> Regards,
> Jean-Paul
>
> On Monday, May 1, 2017 at 10:09:26 PM UTC+2, Amir.Ak.Sh wrote:
>>
>> Hello,
>>
>> I have installed dealii-8.2.1, and when I run make test all the tests
>> fail:
>>
>> 0% tests passed, 4 tests failed out of 4
>>
>> Total Test time (real) = 41.12 sec
>>
>> The following tests FAILED:
>> 1 - step.debug (Failed)
>> 2 - step.release (Failed)
>> 3 - affinity.debug (Failed)
>> 4 - tbb.debug (Failed)
>>
>> I am using Ubuntu 14.04.
>>
>> The complete log file is attached.
>> If any one knows how to handle this I would greatly appreciate the help.
>>
>> Thanks
>>
>>
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###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/amirakbari/Documents/dealii-8.2.1
# CMAKE_SOURCE_DIR: /home/amirakbari/Documents/dealii-8.2.1/build
(Version 8.2.1)
# CMAKE_BINARY_DIR: /home/amirakbari/Documents/dealii-8.2.1/build
# CMAKE_CXX_COMPILER: GNU 4.9.3 on platform Linux x86_64
# /usr/bin/c++
# CMAKE_C_COMPILER: /usr/bin/cc
# CMAKE_Fortran_COMPILER: /usr/bin/gfortran
# CMAKE_GENERATOR: Unix Makefiles
#
# Base configuration (prior to feature configuration):
# DEAL_II_CXX_FLAGS: -pedantic -fpic -Wall -Wpointer-arith
-Wwrite-strings -Wsynth -Wsign-compare -Wswitch -Wno-unused-local-typedefs
-Wno-long-long -Wno-deprecated -Wno-deprecated-declarations -fopenmp-simd
-std=c++11
# DEAL_II_CXX_FLAGS_RELEASE: -O2 -funroll-loops -funroll-all-loops
-fstrict-aliasing -Wno-unused
# DEAL_II_CXX_FLAGS_DEBUG: -Og -ggdb -Wa,--compress-debug-sections
# DEAL_II_LINKER_FLAGS: -Wl,--as-needed -rdynamic
# DEAL_II_LINKER_FLAGS_RELEASE:
# DEAL_II_LINKER_FLAGS_DEBUG: -ggdb
# DEAL_II_DEFINITIONS:
# DEAL_II_DEFINITIONS_RELEASE:
# DEAL_II_DEFINITIONS_DEBUG: DEBUG
# DEAL_II_USER_DEFINITIONS:
# DEAL_II_USER_DEFINITIONS_REL:
# DEAL_II_USER_DEFINITIONS_DEB: DEBUG
# DEAL_II_INCLUDE_DIRS
# DEAL_II_USER_INCLUDE_DIRS:
# DEAL_II_BUNDLED_INCLUDE_DIRS:
# DEAL_II_LIBRARIES: m
# DEAL_II_LIBRARIES_RELEASE:
# DEAL_II_LIBRARIES_DEBUG:
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# ( DEAL_II_WITH_ARPACK = OFF )
# DEAL_II_WITH_BOOST set up with bundled packages
# BOOST_BUNDLED_INCLUDE_DIRS =
/home/amirakbari/Documents/dealii-8.2.1/build/bundled/boost-1.56.0/include
# DEAL_II_WITH_BZIP2 set up with external dependencies
# BZIP2_VERSION = 1.0.6
# BZIP2_INCLUDE_DIRS = /usr/include
# BZIP2_LIBRARIES = /usr/lib/x86_64-linux-gnu/libbz2.so
# DEAL_II_WITH_CXX11 = ON
# ( DEAL_II_WITH_HDF5 = OFF )
# DEAL_II_WITH_LAPACK set up with external dependencies
# LAPACK_LINKER_FLAGS =
# LAPACK_LIBRARIES =
/usr/lib/liblapack.so;/usr/lib/libopenblas.so;gfortran;quadmath;m;c
# DEAL_II_WITH_METIS set up with external dependencies
# METIS_VERSION = 5.0.0
# METIS_INCLUDE_DIRS = /usr/local/include
# METIS_LIBRARIES = /usr/local/lib/libmetis.a
# ( DEAL_II_WITH_MPI = OFF )
# ( DEAL_II_WITH_MUMPS = OFF )
# DEAL_II_WITH_MUPARSER set up with bundled packages
# MUPARSER_BUNDLED_INCLUDE_DIRS =
/home/amirakbari/Documents/dealii-8.2.1/build/bundled/muparser_v2_2_3//include
# DEAL_II_WITH_NETCDF set up with external dependencies
# NETCDF_INCLUDE_DIRS = /usr/include
# NETCDF_LIBRARIES = /usr/lib/libnetcdf_c++.so;/usr/lib/libnetcdf.so
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# ( DEAL_II_WITH_P4EST = OFF )
# ( DEAL_II_WITH_PETSC = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# THREADS_CXX_FLAGS = -Wno-parentheses -Wno-long-long
# THREADS_LINKER_FLAGS = -pthread
# THREADS_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_USER_DEFINITIONS_DEBUG = TBB_USE_DEBUG;TBB_DO_ASSERT=1
# THREADS_BUNDLED_INCLUDE_DIRS =
/home/amirakbari/Documents/dealii-8.2.1/build/bundled/tbb41_20130401oss/include
# THREADS_LIBRARIES = dl
# ( DEAL_II_WITH_TRILINOS = OFF )
# DEAL_II_WITH_UMFPACK set up with external dependencies
# UMFPACK_VERSION = 5.7.1
# UMFPACK_LINKER_FLAGS =
# UMFPACK_INCLUDE_DIRS = /usr/local/include
# UMFPACK_LIBRARIES =
/usr/local/lib/libumfpack.a;/usr/local/lib/libcholmod.a;/usr/local/lib/libccolamd.a;/usr/local/lib/libcolamd.a;/usr/local/lib/libcamd.a;/usr/local/lib/libamd.a;/usr/local/lib/libmetis.a;/usr/lib/liblapack.so;/usr/lib/libopenblas.so;gfortran;quadmath;m;c;rt
# DEAL_II_WITH_ZLIB set up with external dependencies
# ZLIB_VERSION = 1.2.8
# ZLIB_INCLUDE_DIRS = /usr/include
# ZLIB_LIBRARIES = /usr/lib/x86_64-linux-gnu/libz.so
#
# Component configuration:
# DEAL_II_COMPONENT_COMPAT_FILES
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# DEAL_II_COMPONENT_MESH_CONVERTER
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
###
###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/amirakbari/Documents/dealii-8.2.1
# CMAKE_SOURCE_DIR: /home/amirakbari/Documents/dealii-8.2.1/build
(Version 8.2.1)
# CMAKE_BINARY_DIR: /home/amirakbari/Documents/dealii-8.2.1/build
# CMAKE_CXX_COMPILER: GNU 4.9.3 on platform Linux x86_64
# /usr/bin/c++
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# ( DEAL_II_WITH_ARPACK = OFF )
# DEAL_II_WITH_BOOST set up with bundled packages
# DEAL_II_WITH_BZIP2 set up with external dependencies
# DEAL_II_WITH_CXX11 = ON
# ( DEAL_II_WITH_HDF5 = OFF )
# DEAL_II_WITH_LAPACK set up with external dependencies
# DEAL_II_WITH_METIS set up with external dependencies
# ( DEAL_II_WITH_MPI = OFF )
# ( DEAL_II_WITH_MUMPS = OFF )
# DEAL_II_WITH_MUPARSER set up with bundled packages
# DEAL_II_WITH_NETCDF set up with external dependencies
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# ( DEAL_II_WITH_P4EST = OFF )
# ( DEAL_II_WITH_PETSC = OFF )
# ( DEAL_II_WITH_SLEPC = OFF )
# DEAL_II_WITH_THREADS set up with bundled packages
# ( DEAL_II_WITH_TRILINOS = OFF )
# DEAL_II_WITH_UMFPACK set up with external dependencies
# DEAL_II_WITH_ZLIB set up with external dependencies
#
# Component configuration:
# DEAL_II_COMPONENT_COMPAT_FILES
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# DEAL_II_COMPONENT_MESH_CONVERTER
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
# Detailed information (compiler flags, feature configuration) can be found in
detailed.log
#
# Run $ make info to print a help message with a list of top level targets
#
###
