Hi Tuanny,That is good to hear. Unfortunately I have not seen the error message
before. AtpSigHandler seems to be some cray specific library, and it is a bit
surprising that your linker does not seem to find it. Maybe you can try finding
out in which module it is packaged or ask your cluster support for help. To me
this does not look like a deal.II specific problem.Another idea would be to
check if /usr/bin/ld.gold is the linker you should use, or if the build system
picks up he wrong linker.Best Rene-------- Original message --------From:
Tuanny Cajuhi <[email protected]> Date: 6/3/2017 21:13 (GMT-05:00) To:
[email protected] Subject: Re: [deal.II] Re: get errors when installing
dealii on openSUSE Leap 42.1 by using candi
Hi Rene,
your explanation helped me a lot!! :)) I was able to run up to this
point:
[100%] Building CXX object
source/numerics/CMakeFiles/obj_numerics_release.dir/vector_tools_rhs.cc.o
Linking CXX shared library ../lib/libdeal_II.g.so
/usr/bin/ld.gold: error: cannot find -lAtpSigHandler
/usr/bin/ld.gold: error: cannot find -lAtpSigHCommData
collect2: error: ld returned 1 exit status
make[2]: *** [lib/libdeal_II.g.so.8.5.0] Error 1
make[1]: *** [source/CMakeFiles/deal_II.g.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[100%] Built target obj_numerics_release
make: *** [all] Error 2
Failure with exit status: 2
Exit message: There was a problem building dealii v8.5.0.
Have you ever had this error? One colleague of mine got the same
error when installing everything manually. Could it be something
related to the cray, e.g. additional module?
Thank you!
Best,
Tuanny
On 03.06.2017 20:14, Rene Gassmöller
wrote:
I updated the github branch. The file is not longer
at the old position, instead take a look at:
https://github.com/dealii/candi/pull/31
Best
Rene
Am Freitag, 2. Juni 2017 14:55:45 UTC-4 schrieb Rene Gassmöller:
Hi Tuanny,
I happened to install deal.II on a Cray over the last days,
and both compiled everything by hand and (afterwards)
decided to write a candi script for it. Keep in mind that my
instructions are for my specific setting and application,
i.e. I compile deal.II with the packages p4est, trilinos,
and petsc only, and do not know about other packages. The
cluster is also a very specific system (Lonestar 5, of the
Texas Advanced Computing Center), but yours is likely at
least similar. Anyway, I hope this is of help to you.
The candi platform file with instructions on how to set up
the environment is here:
https://github.com/gassmoeller/candi/blob/lonestar_config/deal.II-toolchain/platforms/lonestar5.platform
You can download it and use it with candi by adding the
option --platform=FILENAME where FILENAME contains the full
path to this file. On my cluster I had two problems with
candi that I needed to change. You can find the
modifications I did here: https://github.com/dealii/candi/pull/29
and https://github.com/dealii/candi/pull/30.
They are not yet part of candi, so you will need to include
them manually.
If you decide to compile manually instead let me know, I
also have those commands somewhere (not as nicely
formatted). The most important point are the loaded modules,
environment variables, and compiler options all of which you
can see inside the candi script.
Hope that helps a bit,
Rene
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