Hello I'm using candi to install deal.ii on a brand new cluster.
The new cluster is geared up to use intel, but I can try and use gcc. The
modules I load to begin with are:
1) nixpkgs/.16.09 (H,*S*) 3) gcccore/.5.4.0 (H) 5) openmpi/2.1.1 (
*m*)
2) StdEnv/2016.4 (*S*) 4) gcc/5.4.0 (*t*) 6) imkl/11.3.4.258 (
*math*)
I then specify:
export CC=mpicc; export CXX=mpicxx; export FC=mpif90; export FF=mpif77
In the candi build file, I list imkl in the relevant position:
MKL_DIR=/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64
In this folder there are:
libmkl_ao_worker.so libmkl_intel_ilp64.so
libmkl_avx2.so libmkl_intel_lp64.a
libmkl_avx512_mic.so libmkl_intel_lp64.so
libmkl_avx512.so libmkl_intel_sp2dp.a
libmkl_avx.so libmkl_intel_sp2dp.so
libmkl_blacs_ilp64.a libmkl_intel_thread.a
libmkl_blacs_ilp64.so libmkl_intel_thread.so
libmkl_blacs_intelmpi_ilp64.a libmkl_lapack95_ilp64.a
libmkl_blacs_intelmpi_ilp64.so libmkl_lapack95_lp64.a
libmkl_blacs_intelmpi_lp64.a libmkl_lapack.a
libmkl_blacs_intelmpi_lp64.so libmkl_mc3.so
libmkl_blacs_lp64.a libmkl_mc.so
libmkl_blacs_lp64.so libmkl_pgi_thread.a
libmkl_blacs_openmpi_ilp64.a libmkl_pgi_thread.so
libmkl_blacs_openmpi_ilp64.so libmkl_rt.so
libmkl_blacs_openmpi_lp64.a libmkl_scalapack.a
libmkl_blacs_openmpi_lp64.so libmkl_scalapack_ilp64.a
libmkl_blacs_sgimpt_ilp64.a libmkl_scalapack_ilp64.so
libmkl_blacs_sgimpt_ilp64.so libmkl_scalapack_lp64.a
libmkl_blacs_sgimpt_lp64.a libmkl_scalapack_lp64.so
libmkl_blacs_sgimpt_lp64.so libmkl_sequential.a
libmkl_blas95_ilp64.a libmkl_sequential.so
libmkl_blas95_lp64.a libmkl.so
libmkl_cdft.a libmkl_solver.a
libmkl_cdft_core.a libmkl_tbb_thread.a
libmkl_cdft_core.so libmkl_tbb_thread.so
libmkl_core.a libmkl_vml_avx2.so
libmkl_core.so libmkl_vml_avx512_mic.so
libmkl_def.so libmkl_vml_avx512.so
libmkl_em64t.a libmkl_vml_avx.so
libmkl_gf_ilp64.a libmkl_vml_cmpt.so
libmkl_gf_ilp64.so libmkl_vml_def.so
libmkl_gf_lp64.a libmkl_vml_mc2.so
libmkl_gf_lp64.so libmkl_vml_mc3.so
libmkl_gnu_thread.a libmkl_vml_mc.so
libmkl_gnu_thread.so locale
libmkl_intel_ilp64.a
I run into this error when compiling trilinos:
Processing enabled TPL: MPI (enabled explicitly, disable with
-DTPL_ENABLE_MPI=OFF)
Processing enabled TPL: BLAS (enabled by TeuchosNumerics, disable with
-DTPL_ENABLE_BLAS=OFF)
-- Searching for libs in BLAS_LIBRARY_DIRS=''
-- Searching for a lib in the set "blas blas_win32":
-- Searching for lib 'blas' ...
-- Searching for lib 'blas_win32' ...
-- ERROR: Did not find a lib in the lib set "blas blas_win32" for the
TPL 'BLAS'!
-- ERROR: Could not find the libraries for the TPL 'BLAS'!
-- TIP: If the TPL 'BLAS' is on your system then you can set:
-DBLAS_LIBRARY_DIRS='<dir0>;<dir1>;...'
to point to the directories where these libraries may be found.
Or, just set:
-DTPL_BLAS_LIBRARIES='<path-to-libs0>;<path-to-libs1>;...'
to point to the full paths for the libraries which will
bypass any search for libraries and these libraries will be used
without
question in the build. (But this will result in a build-time error
if not all of the necessary symbols are found.)
-- ERROR: Failed finding all of the parts of TPL 'BLAS' (see above),
Aborting!
-- NOTE: The find module file for this failed TPL 'BLAS' is:
/home/pheron/deal.ii-candi/tmp/unpack/Trilinos-trilinos-release-12-10-1/cmake/tribits/common_tpls/FindTPLBLAS.cmake
I've tried a number of different work arounds but to no luck. Some advice
from the cluster support is as such: "your build software apparently
assumes (incorrectly) that all BLAS library implementations contain the
word "blas" in the library name. There is no "blas_win" library on the
server and the BLAS you probably want to be using is that from the MKL".
Has anyone encountered this error before, especially when using new module
of gcc, openmpi, and mkl?
Thanks in advance,
Phil
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