Phani,

apparently no one used this function for a 
parallel::distributed::Triangulation before. The problem is that we don't 
know about DoFs on artficial cells.
The pull request https://github.com/dealii/dealii/pull/5604 fixes this 
issue by extracting DoFs belonging to locally owned cells.
Essentially, you only have to guard the cell loops in 
extract_hanging_node_dofs by    

if (cell->is_locally_owned())

Best,
Daniel

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