Hi all, I recently update my MacOs system to latest macOS High Sierra (10.13.6) and crash my dealii. so I decide to reinstall dealii through candi script. The installation works fine except some warnings. The problem is that when I cd to step-1, cmake and make command get passed, however, when I make run, error comes:
[ 66%] Built target step-1 [100%] *Run step-1 with Debug configuration* dyld: Library not loaded: libsuperlu_dist.5.dylib Referenced from: /Users/zhiboluo/deal.ii-candi/deal.II-v9.0.0/examples/step-1/./step-1 Reason: image not found make[3]: *** [CMakeFiles/run] Abort trap: 6 make[2]: *** [CMakeFiles/run.dir/all] Error 2 make[1]: *** [CMakeFiles/run.dir/rule] Error 2 I found similar issue here: https://groups.google.com/forum/#!searchin/dealii/dyld$3A$20Library$20not$20loaded$20%7Csort:date/dealii/fIXfMnaFdEc/zgHjkY3_CAAJ And I tried the suggested method by export DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH:~/deal.ii-candi/superlu_dist_5.1.2/lib, but it doesn't work for me. I used otool command to output the link libraries: zhiboluo$ otool -L step-1 step-1: /Users/zhiboluo/deal.ii-candi/deal.II-v9.0.0/lib/libdeal_II.g.9.0.0.dylib (compatibility version 9.0.0, current version 9.0.0) /Users/zhiboluo/deal.ii-candi/p4est-2.0/DEBUG/lib/libp4est-2.0.dylib (compatibility version 0.0.0, current version 0.0.0) /Users/zhiboluo/deal.ii-candi/p4est-2.0/DEBUG/lib/libsc-2.0.dylib (compatibility version 0.0.0, current version 0.0.0) /usr/lib/libz.1.dylib (compatibility version 1.0.0, current version 1.2.11) @rpath/libmuelu-adapters.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libmuelu-interface.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libmuelu.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libteko.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libstratimikos.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libstratimikosbelos.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libstratimikosaztecoo.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libstratimikosamesos.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libstratimikosml.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libstratimikosifpack.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libifpack2-adapters.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libifpack2.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libanasazitpetra.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libModeLaplace.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libanasaziepetra.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libanasazi.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libamesos2.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libbelostpetra.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libbelosepetra.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libbelos.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libml.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libifpack.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libzoltan2.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libpamgen_extras.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libpamgen.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libamesos.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libgaleri-xpetra.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libgaleri-epetra.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libaztecoo.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libisorropia.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libxpetra-sup.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libxpetra.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libthyratpetra.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libthyraepetraext.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libthyraepetra.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libthyracore.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libepetraext.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libtpetraext.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libtpetrainout.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libtpetra.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libkokkostsqr.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libtpetrakernels.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libtpetraclassiclinalg.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libtpetraclassicnodeapi.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libtpetraclassic.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libtriutils.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libzoltan.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libepetra.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libsacado.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/librtop.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libteuchoskokkoscomm.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libteuchoskokkoscompat.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libteuchosremainder.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libteuchosnumerics.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libteuchoscomm.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libteuchosparameterlist.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libteuchoscore.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libkokkosalgorithms.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libkokkoscontainers.12.dylib (compatibility version 12.0.0, current version 12.10.1) @rpath/libkokkoscore.12.dylib (compatibility version 12.0.0, current version 12.10.1) libsuperlu_dist.5.dylib (compatibility version 5.0.0, current version 5.1.0) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1252.50.4) /Users/zhiboluo/deal.ii-candi/hdf5-1.10.1/lib/libhdf5_hl.100.dylib (compatibility version 101.0.0, current version 101.1.0) /Users/zhiboluo/deal.ii-candi/hdf5-1.10.1/lib/libhdf5.101.dylib (compatibility version 102.0.0, current version 102.0.0) libTKBO.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKBool.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKBRep.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKernel.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKFeat.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKFillet.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKG2d.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKG3d.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKGeomAlgo.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKGeomBase.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKHLR.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKIGES.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKMath.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKMesh.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKOffset.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKPrim.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKShHealing.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKSTEP.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKSTEPAttr.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKSTEPBase.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKSTEP209.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKSTL.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKTopAlgo.11.dylib (compatibility version 11.0.0, current version 11.0.0) libTKXSBase.11.dylib (compatibility version 11.0.0, current version 11.0.0) /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate (compatibility version 1.0.0, current version 4.0.0) /usr/local/opt/open-mpi/lib/libmpi_usempif08.40.dylib (compatibility version 51.0.0, current version 51.1.0) /usr/local/opt/open-mpi/lib/libmpi_usempi_ignore_tkr.40.dylib (compatibility version 51.0.0, current version 51.1.0) /usr/local/opt/open-mpi/lib/libmpi_mpifh.40.dylib (compatibility version 51.0.0, current version 51.1.0) /usr/local/opt/open-mpi/lib/libmpi.40.dylib (compatibility version 51.0.0, current version 51.1.0) /Users/zhiboluo/deal.ii-candi/slepc-3.7.3/lib/libslepc.3.7.dylib (compatibility version 3.7.0, current version 3.7.3) /Users/zhiboluo/deal.ii-candi/petsc-3.7.6/lib/libpetsc.3.7.dylib (compatibility version 3.7.0, current version 3.7.6) libparmetis.dylib (compatibility version 0.0.0, current version 0.0.0) libmetis.dylib (compatibility version 0.0.0, current version 0.0.0) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib (compatibility version 1.0.0, current version 1.0.0) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib (compatibility version 1.0.0, current version 1.0.0) /usr/local/opt/openssl/lib/libssl.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0) /usr/local/opt/openssl/lib/libcrypto.1.0.0.dylib (compatibility version 1.0.0, current version 1.0.0) /usr/local/lib/gcc/8/libgcc_s.1.dylib (compatibility version 1.0.0, current version 1.0.0) /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 400.9.0) @rpath/libLTO.dylib (compatibility version 1.0.0, current version 3902.0.39) I found that some other libraries path (like p4est, slepc, and petsc) are set correctly. However, the library path of superlu_dist, parmetis, and oce are not set correctly. The generated object try to find "libsuperlu_dist.5.dylib" in the current path, but actually this library is installed in /Users/zhiboluo/deal.ii-candi/superlu_dist_5.1.2/lib. Then I copy these libraries to current folder, "make run" works! But I don't want to copy these libraries everytime I go to compile another project. *Any suggestions to solve this dynamic library link problems?* *Thanks~* -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. For more options, visit https://groups.google.com/d/optout.
