It seems the issue is related to -DDEAL_II_WITH_64BIT_INDICES=ON. If I set -DDEAL_II_WITH_64BIT_INDICES=OFF, the compilation worked fine.
Best, Sambit On Tuesday, September 18, 2018 at 11:17:43 PM UTC-5, Sambit Das wrote: > > Hi Bruno and Jean, > > Based on the discussion in (https://github.com/dealii/dealii/issues/7204 > <https://www.google.com/url?q=https%3A%2F%2Fgithub.com%2Fdealii%2Fdealii%2Fissues%2F7204&sa=D&sntz=1&usg=AFQjCNFWFhH2gmvYaboY3_Dm_fEIvD4wxQ>) > > I used the temporary fix of setting > SET(ZLIB_INCLUDE_DIR "/usr/local/include") in FindZLIB.cmake, which > addressed the above compilation issue. > > However, I get a new compilation error now: > > *[ 59%] Building CXX object > source/particles/CMakeFiles/obj_particle_debug.dir/particle.cc.o* > */gpfs/gpfs0/groups/gavini/dsambit/software/dealii/dealii/include/deal.II/matrix_free/cuda_hanging_nodes_internal.h(286): > > error: no suitable user-defined conversion from "std::vector<unsigned int, > std::allocator<unsigned int>>" to "std::vector<boost::ulong_long_type, > std::allocator<boost::ulong_long_type>>" exists* > * detected during:* > * instantiation of "void > dealii::CUDAWrappers::internal::HangingNodes<dim>::setup_constraints(std::vector<unsigned > > int, std::allocator<unsigned int>> &, const CellIterator &, unsigned int &) > const [with dim=2, > CellIterator=dealii::FilteredIterator<dealii::TriaActiveIterator<dealii::DoFCellAccessor<dealii::DoFHandler<2, > > 2>, false>>>]" * > */gpfs/gpfs0/groups/gavini/dsambit/software/dealii/dealii/include/deal.II/matrix_free/cuda_matrix_free.templates.h(288): > > here* > * instantiation of "void > dealii::CUDAWrappers::internal::ReinitHelper<dim, > Number>::get_cell_data(const CellFilter &, unsigned int) [with dim=2, > Number=float, > CellFilter=dealii::FilteredIterator<dealii::TriaActiveIterator<dealii::DoFCellAccessor<dealii::DoFHandler<2, > > 2>, false>>>]" * > */gpfs/gpfs0/groups/gavini/dsambit/software/dealii/dealii/include/deal.II/matrix_free/cuda_matrix_free.templates.h(578): > > here* > * instantiation of "void dealii::CUDAWrappers::MatrixFree<dim, > Number>::reinit(const dealii::Mapping<dim, dim> &, const > dealii::DoFHandler<dim, dim> &, const dealii::AffineConstraints<Number> &, > const dealii::Quadrature<1> &, dealii::CUDAWrappers::MatrixFree<dim, > Number>::AdditionalData) [with dim=2, Number=float]" * > */gpfs/gpfs0/groups/gavini/dsambit/software/dealii/dealii/source/matrix_free/cuda_matrix_free.cu > > <http://cuda_matrix_free.cu>(25): here* > > The same error occurs with both bundled BOOST as well linking to a > manually installed BOOST/1.66.0. > > Do you think the above compilation error is related to the original issue > in (https://github.com/dealii/dealii/issues/7204 > <https://www.google.com/url?q=https%3A%2F%2Fgithub.com%2Fdealii%2Fdealii%2Fissues%2F7204&sa=D&sntz=1&usg=AFQjCNFWFhH2gmvYaboY3_Dm_fEIvD4wxQ> > )? > > Thank you, > Sambit > > On Tuesday, September 18, 2018 at 1:02:07 PM UTC-5, Sambit Das wrote: >> >> Hi Jean-Paul, >> >> Thanks for referring me to the github issue ( >> https://github.com/dealii/dealii/issues/7204 >> <https://www.google.com/url?q=https%3A%2F%2Fgithub.com%2Fdealii%2Fdealii%2Fissues%2F7204&sa=D&sntz=1&usg=AFQjCNFWFhH2gmvYaboY3_Dm_fEIvD4wxQ>). >> >> It does seem they are related issues. >> I will keep following the github issue. >> >> Thank you, >> Sambit >> >> On Tuesday, September 18, 2018 at 11:53:17 AM UTC-5, Jean-Paul Pelteret >> wrote: >>> >>> Hi Sambit, >>> >>> Your new error looks like the same one reported ( >>> https://github.com/dealii/dealii/issues/7204 >>> <https://www.google.com/url?q=https%3A%2F%2Fgithub.com%2Fdealii%2Fdealii%2Fissues%2F7204&sa=D&sntz=1&usg=AFQjCNFWFhH2gmvYaboY3_Dm_fEIvD4wxQ>) >>> yesterday >>> so I don’t think that using another version of CMake will fix it. I’m not >>> quite sure what the answer to the problem is, since the discussion is >>> ongoing. >>> >>> Best, >>> Jean-Paul >>> >>> On 18 Sep 2018, at 18:47, Sambit Das <dsa...@umich.edu> wrote: >>> >>> Hi Bruno, >>> >>> Thank you for your reply. Now I tried CMake 3.9.6 but got the following >>> compilation error >>> >>> [ 54%] Building CUDA object >>> source/base/CMakeFiles/obj_base_debug.dir/cuda.cu.o >>> In file included from >>> /gpfs/gpfs0/software/rhel72/packages/cuda/9.2/include/crt/math_functions.h:8853:0, >>> from >>> /gpfs/gpfs0/software/rhel72/packages/cuda/9.2/include/crt/common_functions.h:257, >>> from >>> /gpfs/gpfs0/software/rhel72/packages/cuda/9.2/include/common_functions.h:50, >>> from >>> /gpfs/gpfs0/software/rhel72/packages/cuda/9.2/include/cuda_runtime.h:115, >>> from <command-line>:0: >>> /gpfs/gpfs0/software/rhel72/packages/gcc/7.2.0/include/c++/7.2.0/cmath:45:15: >>> >>> fatal error: math.h: No such file or directory >>> #include_next <math.h> >>> ^~~~~~~~ >>> compilation terminated. >>> >>> Should I try CMake 3.10/11? >>> >>> Thank you, >>> Sambit >>> >>> On Tuesday, September 18, 2018 at 7:27:38 AM UTC-5, Bruno Turcksin wrote: >>>> >>>> Sambit, >>>> >>>> Can you try with a different version of CMake. We do not support CMake >>>> 3.12 with CUDA at the moment. >>>> >>>> Best, >>>> >>>> Bruno >>>> >>>> On Monday, September 17, 2018 at 8:56:31 PM UTC-4, Sambit Das wrote: >>>>> >>>>> Dear all, >>>>> >>>>> I am trying to compile the latest development version of dealii >>>>> (9.1.0-pre, shortrev c6b7876) using gcc/7.2.0, >>>>> openmpi/3.0.0/gcc/7.2.0, cuda/9.2 and cmake-3.12.2. >>>>> <http://3.10.0.2/> >>>>> >>>>> During compilation I get the following error: >>>>> >>>>> [ 57%] Building CUDA object >>>>> source/base/CMakeFiles/obj_base_debug.dir/cuda.cu.o >>>>> In file included from >>>>> /gpfs/gpfs0/groups/gavini/dsambit/software/dealii/dealii/include/deal.II/base/cuda.h:19:0, >>>>> from >>>>> /gpfs/gpfs0/groups/gavini/dsambit/software/dealii/dealii/source/base/ >>>>> cuda.cu:16: >>>>> /gpfs/gpfs0/groups/gavini/dsambit/software/dealii/build/include/deal.II/base/config.h:421:12: >>>>> >>>>> fatal error: mpi.h: No such file or directory >>>>> # include <mpi.h> >>>>> ^~~~~~~ >>>>> compilation terminated. >>>>> >>>>> >>>>> I have attached the detailed.log file. >>>>> >>>>> I have used the following configuration line: >>>>> cmake -DDEAL_II_CXX_FLAGS_RELEASE="-O3" -DDEAL_II_WITH_CXX17=OFF >>>>> -DCMAKE_C_COMPILER=mpicc -DCMAKE_CXX_COMPILER=mpicxx >>>>> -DCMAKE_Fortran_COMPILER=mpif90 -DDEAL_II_WITH_CUDA=ON >>>>> -DDEAL_II_COMPONENT_EXAMPLES=OFF >>>>> -DDEAL_II_WITH_MPI=ON -DDEAL_II_WITH_64BIT_INDICES=ON >>>>> >>>>> -DP4EST_DIR="/gpfs/gpfs0/groups/gavini/dsambit/software/p4est/installGcc7.2.0" >>>>> >>>>> ../dealii >>>>> >>>>> Interestingly, if I remove -DDEAL_II_WITH_CUDA=ON, compilation is >>>>> successful. I am wondering if I am missing any cuda related >>>>> compilation flags. >>>>> >>>>> Thanks a lot in advance, >>>>> >>>>> Best, >>>>> Sambit >>>>> >>>> >>> -- >>> The deal.II project is located at http://www.dealii.org/ >>> For mailing list/forum options, see >>> https://groups.google.com/d/forum/dealii?hl=en >>> --- >>> You received this message because you are subscribed to the Google >>> Groups "deal.II User Group" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to dealii+un...@googlegroups.com. >>> For more options, visit https://groups.google.com/d/optout. >>> >>> >>> -- The deal.II project is located at http://www.dealii.org/ For mailing list/forum options, see https://groups.google.com/d/forum/dealii?hl=en --- You received this message because you are subscribed to the Google Groups "deal.II User Group" group. To unsubscribe from this group and stop receiving emails from it, send an email to dealii+unsubscr...@googlegroups.com. 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